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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YIF1A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
105.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
295.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
277.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
264.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
252.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
243.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
226.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
209.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
208.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
202.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
202.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
195.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
190.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
189.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
186.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
186.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
185.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
184.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
183.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
178.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
172.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
170.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
170.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
167.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
167.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
165.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
165.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
165.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
162.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
160.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
159.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
159.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
157.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
157.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
155.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
155.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
154.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
154.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
154.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
153.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
153.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
152.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
152.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
151.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
150.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
147.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
147.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
147.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
146.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
146.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
145.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
145.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
144.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
143.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
140.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
140.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
140.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
139.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
139.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
138.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
137.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
136.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
136.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
135.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
135.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
134.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
134.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
133.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
132.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
132.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
132.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
132.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
131.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
130.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
130.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
130.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
130.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
130.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
130.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
130.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
129.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
129.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
129.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
128.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
128.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
128.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
127.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
127.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
127.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
127.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
126.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
126.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
125.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
125.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
125.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
124.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
123.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
123.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
123.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
123.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
122.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
122.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
121.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
121.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
121.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
121.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
121.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
120.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
120.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
119.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
119.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
119.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
119.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
118.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
118.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
118.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
118.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
118.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
117.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
117.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
117.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
116.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
116.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
115.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
115.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
115.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
115.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
114.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
114.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
114.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
114.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
114.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
114.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
114.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
114.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
113.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
113.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
112.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
112.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
111.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
111.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
111.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
111.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
111.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
110.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
110.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
110.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
110.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
109.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
109.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
109.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
108.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
108.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
108.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
108.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
107.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
107.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
107.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
107.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
106.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
106.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
106.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
106.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
105.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
105.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
105.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
105.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
105.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
104.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
104.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
102.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
102.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
102.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
101.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
101.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
101.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
101.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
101.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
101.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
100.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
100.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
100.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
100.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
100.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
100.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
100.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
100.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
100.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
100.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
99.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
99.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
99.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
99.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
99.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
99.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
99.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
98.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
98.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
98.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
98.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
97.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
97.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
97.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
97.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
96.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
96.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
95.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
95.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
95.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
95.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
93.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
93.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
93.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
93.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
93.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
93.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
92.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
92.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
92.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
91.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
91.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
91.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
90.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
90.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
89.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
89.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
89.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
89.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
89.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
88.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
88.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
88.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
88.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
87.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
87.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
87.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
87.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
87.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
87.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
87.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
87.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
86.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
86.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
86.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
86.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
85.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
85.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
85.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
85.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
85.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
85.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
85.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
84.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
83.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
83.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
83.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
82.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
82.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
82.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
82.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
82.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
81.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
81.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
81.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
81.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
81.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
81.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
80.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
80.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
80.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
80.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
80.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
79.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
79.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
79.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
79.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
78.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
78.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
78.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
77.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
77.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
77.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
77.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
76.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
76.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
76.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
76.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
75.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
75.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
75.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
75.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
74.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
74.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
73.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
73.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
73.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
72.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
72.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
72.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
72.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
72.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
71.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
70.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
69.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
69.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
69.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
68.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
68.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
68.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
68.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
67.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
67.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
67.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
66.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
66.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
65.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
65.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
65.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
64.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
64.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
64.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
64.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
63.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
63.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
63.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
62.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
61.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
60.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
59.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
59.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
58.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
57.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
56.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
55.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
54.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
54.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
53.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
53.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
52.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
52.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
52.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
52.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
50.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
50.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
49.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
49.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
48.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
47.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
47.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
46.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
45.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
45.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
43.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
40.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
40.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
39.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
38.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
30.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
28.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
28.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YIF1A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
65.6
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
250.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
207.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
152.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
135.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
131.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
130.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
128.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
127.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
121.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
120.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
117.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
114.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
112.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
111.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
110.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
107.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
104.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
100.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
99.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
99.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
99.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
98.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
97.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
96.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
96.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
96.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
95.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
94.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
94.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
93.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
92.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
92.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
92.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
92.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
91.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
89.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
89.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
89.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
89.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
89.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
88.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
88.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
87.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
86.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
85.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
85.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
84.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
84.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
83.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
82.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
81.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
81.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
81.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
79.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
78.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
78.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
78.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
77.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
77.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
76.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
75.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
75.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
75.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
74.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
74.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
73.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
73.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
72.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
72.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
71.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
71.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
71.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
70.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
70.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
70.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
70.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
69.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
69.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
69.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
68.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
68.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
68.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
68.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
68.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
67.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
67.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
67.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
67.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
67.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
67.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
66.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
66.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
66.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
66.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
66.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
65.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
65.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
64.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
63.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
63.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
63.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
63.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
62.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
62.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
61.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
61.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
61.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
61.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
61.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
60.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
60.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
59.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
59.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
59.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
59.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
59.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
59.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
59.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
59.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
58.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
58.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
58.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
58.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
57.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
57.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
57.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
57.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
56.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
56.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
56.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
55.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
55.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
55.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
55.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
55.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
55.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
55.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
55.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
55.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
55.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
55.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
54.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
54.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
54.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
54.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
54.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
54.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
53.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
53.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
53.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
53.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
53.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
53.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
52.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
52.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
51.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
51.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
50.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
50.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
50.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
49.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
48.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
48.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
48.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
48.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
48.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
47.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
47.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
47.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
47.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
47.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
47.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
46.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
46.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
46.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
46.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
46.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
45.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
45.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
45.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
45.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
44.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
44.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
44.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
43.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
42.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
42.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
42.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
42.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
42.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
42.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
41.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
41.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
41.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
40.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
40.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
39.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
39.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
39.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
38.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
37.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
36.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
36.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
35.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
34.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
34.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
33.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
31.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
31.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
1.0
1027
Tumor
0.7
665
Tumor
0.7
285
Tumor
0.6
925
Tumor
0.6
615
Tumor
0.6
353
Tumor
0.6
223
Tumor
0.5
617
Tumor
0.5
913
Tumor
0.5
145
Tumor
0.5
911
Tumor
0.5
861
Tumor
0.5
685
Tumor
0.5
467
Tumor
0.5
723
Tumor
0.4
937
Tumor
0.4
113
Tumor
0.4
286
Normal
0.4
721
Tumor
0.4
647
Tumor
0.4
868
Normal
0.4
1021
Tumor
0.4
742
Normal
0.4
713
Tumor
0.4
123
Tumor
0.3
873
Tumor
0.3
745
Tumor
0.3
857
Tumor
0.3
146
Normal
0.3
137
Tumor
0.3
221
Tumor
0.3
535
Tumor
0.3
568
Normal
0.3
462
Normal
0.3
648
Normal
0.3
524
Normal
0.3
513
Tumor
0.3
452
Normal
0.3
977
Tumor
0.3
1041
Tumor
0.3
883
Tumor
0.3
954
Normal
0.3
738
Normal
0.3
564
Normal
0.3
327
Tumor
0.3
414
Normal
0.3
952
Normal
0.3
411
Tumor
0.3
468
Normal
0.3
662
Normal
0.3
363
Tumor
0.3
465
Tumor
0.3
558
Normal
0.3
224
Normal
0.3
951
Tumor
0.3
447
Tumor
0.3
132
Normal
0.3
311
Tumor
0.3
328
Normal
0.2
867
Tumor
0.2
1032
Normal
0.2
743
Tumor
0.2
138
Normal
0.2
383
Tumor
0.2
572
Normal
0.2
955
Tumor
0.2
514
Normal
0.2
823
Tumor
0.2
451
Tumor
0.2
388
Normal
0.2
466
Normal
0.2
526
Normal
0.2
212
Normal
0.2
228
Normal
0.2
938
Normal
0.2
434
Normal
0.2
162
Normal
0.2
1022
Normal
0.2
136
Normal
0.2
921
Tumor
0.2
777
Tumor
0.2
686
Normal
0.2
435
Tumor
0.2
456
Normal
0.2
446
Normal
0.2
728
Normal
0.2
1013
Tumor
0.2
127
Tumor
0.2
464
Normal
0.2
481
Tumor
0.2
724
Normal
0.2
1043
Tumor
0.2
376
Normal
0.2
422
Normal
0.2
284
Normal
0.2
392
Normal
0.2
191
Tumor
0.2
616
Normal
0.2
214
Normal
0.2
864
Normal
0.2
354
Normal
0.2
1044
Normal
0.2
852
Normal
0.2
563
Tumor
0.2
147
Tumor
0.2
518
Normal
0.2
482
Normal
0.2
395
Tumor
0.2
428
Normal
0.2
488
Normal
0.2
666
Normal
0.2
433
Tumor
0.2
516
Normal
0.2
574
Normal
0.2
944
Normal
0.2
523
Tumor
0.2
262
Normal
0.2
636
Normal
0.2
111
Normal
0.2
746
Normal
0.2
912
Normal
0.2
884
Normal
0.2
312
Normal
0.2
128
Normal
0.2
672
Normal
0.2
816
Normal
0.1
391
Tumor
0.1
186
Normal
0.1
366
Normal
0.1
314
Normal
0.1
448
Normal
0.1
968
Normal
0.1
135
Tumor
0.1
494
Normal
0.1
258
Normal
0.1
424
Normal
0.1
124
Normal
0.1
272
Normal
0.1
815
Tumor
0.1
741
Tumor
0.1
1046
Normal
0.1
412
Normal
0.1
627
Tumor
0.1
924
Normal
0.1
384
Normal
0.1
445
Tumor
0.1
142
Normal
0.1
664
Normal
0.1
141
Tumor
0.1
926
Normal
0.1
824
Normal
0.1
878
Normal
0.1
881
Tumor
0.1
874
Normal
0.1
716
Normal
0.1
362
Normal
0.1
862
Normal
0.1
332
Normal
0.1
1045
Tumor
0.1
722
Normal
0.1
472
Normal
0.1
358
Normal
0.1
187
Tumor
0.1
536
Normal
0.1
914
Normal
0.1
444
Normal
0.1
755
Tumor
0.1
786
Normal
0.1
517
Tumor
0.1
426
Normal
0.1
744
Normal
0.1
278
Normal
0.1
956
Normal
0.1
491
Tumor
0.1
1028
Normal
0.1
196
Normal
0.1
368
Normal
0.1
922
Normal
0.1
114
Normal
0.1
882
Normal
0.1
172
Normal
0.1
696
Normal
0.1
965
Tumor
0.1
851
Tumor
0.1
364
Normal
0.1
916
Normal
0.1
515
Tumor
0.1
1014
Normal
0.1
818
Normal
0.1
352
Normal
0.1
268
Normal
0.1
218
Normal
0.1
641
Tumor
0.0
342
Normal
0.0
923
Tumor
0.0
628
Normal
0.0
413
Tumor
0.0
958
Normal
0.0
756
Normal
0.0
222
Normal
0.0
356
Normal
0.0
982
Normal
0.0
396
Normal
0.0
267
Tumor
0.0
1016
Normal
0.0
525
Tumor
0.0
737
Tumor
0.0
416
Normal
0.0
715
Tumor
0.0
918
Normal
0.0
431
Tumor
0.0
546
Normal
0.0
386
Normal
0.0
697
Tumor
0.0
984
Normal
0.0
978
Normal
0.0
421
Tumor
0.0
1025
Tumor
0.0
126
Normal
0.0
1026
Normal
0.0
976
Normal
0.0
528
Normal
0.0
232
Normal
0.0
478
Normal
0.0
814
Normal
0.0
813
Tumor
0.0
261
Tumor
0.0
211
Tumor
0.0
213
Tumor
0.0
361
Tumor
0.0
443
Tumor
0.0
148
Normal
0.0
365
Tumor
0.0
1042
Normal
0.0
112
Tumor
0.0
642
Normal
0.0
778
Normal
0.0
474
Normal
0.0
498
Normal
0.0
484
Normal
0.0
877
Tumor
0.0
817
Tumor
0.0
461
Tumor
0.0
915
Tumor
0.0
538
Normal
0.0
192
Normal
0.0
436
Normal
0.0
351
Tumor
0.0
331
Tumor
0.0
477
Tumor
0.0
217
Tumor
0.0
432
Normal
0.0
341
Tumor
0.0
298
Normal
0.0
394
Normal
0.0
966
Normal
0.0
423
Tumor
0.0
785
Tumor
0.0
195
Tumor
0.0
455
Tumor
0.0
698
Normal
0.0
427
Tumor
0.0
393
Tumor
0.0
271
Tumor
0.0
355
Tumor
-0.1
227
Tumor
-0.1
618
Normal
-0.1
493
Tumor
-0.1
727
Tumor
-0.1
714
Normal
-0.1
557
Tumor
-0.1
415
Tumor
-0.1
471
Tumor
-0.1
858
Normal
-0.1
635
Tumor
-0.1
188
Normal
-0.1
277
Tumor
-0.1
161
Tumor
-0.1
297
Tumor
-0.1
497
Tumor
-0.1
313
Tumor
-0.1
257
Tumor
-0.1
866
Normal
-0.1
385
Tumor
-0.1
553
Tumor
-0.1
1031
Tumor
-0.1
344
Normal
-0.1
1015
Tumor
-0.1
492
Normal
-0.1
571
Tumor
-0.1
483
Tumor
-0.1
663
Tumor
-0.1
573
Tumor
-0.1
185
Tumor
-0.1
171
Tumor
-0.1
671
Tumor
-0.1
981
Tumor
-0.2
983
Tumor
-0.2
534
Normal
-0.2
131
Tumor
-0.2
554
Normal
-0.2
963
Tumor
-0.2
387
Tumor
-0.2
567
Tumor
-0.2
964
Normal
-0.2
283
Tumor
-0.2
975
Tumor
-0.2
527
Tumor
-0.2
943
Tumor
-0.2
375
Tumor
-0.2
917
Tumor
-0.2
953
Tumor
-0.3
463
Tumor
-0.3
343
Tumor
-0.3
357
Tumor
-0.3
545
Tumor
-0.3
487
Tumor
-0.3
473
Tumor
-0.3
425
Tumor
-0.4
125
Tumor
-0.4
661
Tumor
-0.4
367
Tumor
-0.4
537
Tumor
-0.4
533
Tumor
-0.4
865
Tumor
-0.4
967
Tumor
-0.5
231
Tumor
-0.6
957
Tumor
-0.6
695
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.