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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNAPC5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
50.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
42.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
38.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
37.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
31.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
31.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
22.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNAPC5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
716
Normal
2.1
722
Normal
1.9
1041
Tumor
1.4
1025
Tumor
0.8
1045
Tumor
0.8
1027
Tumor
0.8
416
Normal
0.6
713
Tumor
0.6
862
Normal
0.6
568
Normal
0.6
328
Normal
0.6
685
Tumor
0.5
1032
Normal
0.5
743
Tumor
0.5
866
Normal
0.5
737
Tumor
0.5
874
Normal
0.5
727
Tumor
0.5
364
Normal
0.5
1021
Tumor
0.5
573
Tumor
0.5
686
Normal
0.5
696
Normal
0.5
1022
Normal
0.4
356
Normal
0.4
715
Tumor
0.4
976
Normal
0.4
1031
Tumor
0.4
1046
Normal
0.4
864
Normal
0.3
574
Normal
0.3
868
Normal
0.3
912
Normal
0.3
914
Normal
0.3
723
Tumor
0.3
1026
Normal
0.3
415
Tumor
0.3
882
Normal
0.3
741
Tumor
0.3
742
Normal
0.3
714
Normal
0.2
878
Normal
0.2
412
Normal
0.2
728
Normal
0.2
571
Tumor
0.2
744
Normal
0.2
558
Normal
0.2
327
Tumor
0.2
1042
Normal
0.1
567
Tumor
0.1
695
Tumor
0.1
572
Normal
0.1
564
Normal
0.1
563
Tumor
0.1
884
Normal
0.1
1028
Normal
0.1
536
Normal
0.1
861
Tumor
0.1
411
Tumor
0.1
738
Normal
0.1
363
Tumor
0.1
883
Tumor
0.0
964
Normal
0.0
911
Tumor
0.0
1043
Tumor
0.0
867
Tumor
0.0
863
Tumor
0.0
557
Tumor
0.0
968
Normal
0.0
447
Tumor
-0.1
881
Tumor
-0.1
1044
Normal
-0.1
724
Normal
-0.1
721
Tumor
-0.1
698
Normal
-0.1
873
Tumor
-0.1
966
Normal
-0.1
913
Tumor
-0.1
535
Tumor
-0.1
877
Tumor
-0.2
355
Tumor
-0.2
965
Tumor
-0.2
448
Normal
-0.3
963
Tumor
-0.3
958
Normal
-0.3
967
Tumor
-0.4
975
Tumor
-0.4
697
Tumor
-0.5
865
Tumor
-0.5
957
Tumor
-0.6
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
515
Tumor
N/A
636
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
451
Tumor
N/A
331
Tumor
N/A
452
Normal
N/A
211
Tumor
N/A
332
Normal
N/A
212
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
