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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VEGFB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.63
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.034
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
45%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
64%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
81.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
71.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
68.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
67.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
54.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
53.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
52.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
50.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
49.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
48.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
48.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
47.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
47.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
47.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
46.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
46.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
45.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
45.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
45.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
44.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
44.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
44.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
43.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
41.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
39.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
38.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
37.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
36.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
35.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
35.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
34.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
33.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
32.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
26.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VEGFB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 2.14
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.0023
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
0%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
67%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.7
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
204.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
171.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
168.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
152.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
144.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
141.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
125.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
117.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
112.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
112.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
109.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
97.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
94.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
86.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
84.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
84.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
84.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
80.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
77.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
76.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
76.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
74.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
73.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
73.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
72.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
71.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
70.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
70.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
70.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
68.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
68.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
68.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
66.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
66.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
64.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
64.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
63.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
62.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
59.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
57.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
57.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
56.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
54.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
54.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
53.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
53.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
53.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
53.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
52.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
51.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
50.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
50.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
49.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
48.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
47.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
47.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
46.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
46.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
45.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
45.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
45.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
44.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
43.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
43.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
42.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
42.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
42.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
42.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
42.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
42.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
42.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
39.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
37.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
35.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
35.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
35.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
35.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
34.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
33.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
33.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
25.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.