MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA Brain:54.2 nTPM
GTEx:14.9 nTPM
FANTOM5:69.8 Scaled Tags Per Million
Pig:60.9 nTPM
Mouse:35.8 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.2
2586 Male, age 75, left hemisphere 66.4
2828 Female, age 72, unknown 58.7
1870 Female, age 42, unknown 49.3
1833 Male, age 53, unknown 48.7
2666 Male, age 74, left hemisphere 46.6
2019 Male, age 18, unknown 45.5
1827 Male, age 72, unknown 44.6
1830 Male, age 51, unknown 43.8
2411 Female, age 72, unknown 40.2
2219 Male, age 76, both hemispheres 37.9
Dorsal raphe nucleus
nTPM: 50.4
2016 Female, age 72, unknown 57.2
1828 Male, age 53, unknown 53.2
2298 Female, age 72, unknown 51.8
2047 Male, age 72, unknown 49.7
2750 Male, age 76, both hemispheres 40.0
Inferior colliculus
nTPM: 50.0
2849 Male, age 72, unknown 56.4
1848 Female, age 42, unknown 53.5
1890 Male, age 53, unknown 45.3
2097 Female, age 72, unknown 44.8
Median raphe nucleus
nTPM: 39.9
2220 Male, age 76, midline 39.9
Periaquaductal grey, anterior
nTPM: 51.2
1795 Male, age 51, unknown 54.0
2502 Female, age 75, unknown 52.3
1947 Male, age 18, unknown 47.5
Periaquaductal grey, dorsal
nTPM: 53.7
2850 Male, age 76, both hemispheres 65.8
1840 Male, age 53, unknown 54.4
1831 Male, age 72, unknown 49.5
2464 Female, age 72, unknown 45.2
Periaquaductal grey, lateral
nTPM: 54.2
2140 Male, age 76, both hemispheres 60.1
2053 Male, age 18, unknown 55.0
2272 Male, age 74, both hemispheres 47.5
Pretectal area
nTPM: 50.3
2667 Female, age 75, unknown 55.4
1817 Female, age 42, unknown 55.3
2273 Male, age 74, both hemispheres 54.9
2407 Male, age 75, both hemispheres 51.7
1816 Male, age 51, unknown 50.0
1944 Female, age 72, unknown 50.0
1815 Male, age 53, unknown 49.7
2825 Male, age 18, unknown 49.3
2224 Female, age 72, unknown 47.8
2007 Male, age 72, unknown 46.4
2316 Male, age 76, right hemisphere 43.3
Red nucleus
nTPM: 51.6
1954 Female, age 42, unknown 58.4
1904 Male, age 53, unknown 57.6
2769 Male, age 72, unknown 55.4
1821 Female, age 72, unknown 54.6
1865 Male, age 51, unknown 54.0
2227 Male, age 72, unknown 53.4
2823 Male, age 76, right hemisphere 53.1
2725 Female, age 75, unknown 49.8
2503 Female, age 72, unknown 49.6
2588 Male, age 74, left hemisphere 47.4
2785 Male, age 18, unknown 46.6
2584 Male, age 75, left hemisphere 39.6
Substantia nigra
nTPM: 45.1
2699 Male, age 18, unknown 57.7
1916 Female, age 42, unknown 51.4
2583 Male, age 75, right hemisphere 47.5
1889 Female, age 72, unknown 46.4
1851 Male, age 51, unknown 45.9
2665 Male, age 74, both hemispheres 45.0
2590 Female, age 75, unknown 43.2
2409 Female, age 72, unknown 39.5
1941 Male, age 53, unknown 38.8
2241 Male, age 72, unknown 36.1
Superior colliculus
nTPM: 50.8
2664 Male, age 75, both hemispheres 70.5
1995 Male, age 72, unknown 61.1
1796 Male, age 53, unknown 50.9
2087 Female, age 72, unknown 49.1
2261 Male, age 18, unknown 48.4
1913 Female, age 42, unknown 48.0
2668 Female, age 75, unknown 47.6
1839 Male, age 51, unknown 47.2
2587 Male, age 74, left hemisphere 44.4
1895 Male, age 76, right hemisphere 41.0
Ventral tegmental area
nTPM: 43.8
2410 Female, age 72, unknown 45.3
1942 Male, age 51, unknown 44.7
2021 Male, age 53, unknown 44.3
1915 Female, age 42, unknown 44.0
2223 Female, age 72, unknown 42.5
2218 Male, age 76, both hemispheres 42.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.9
Samples: 139

Max nTPM: 40.1
Min nTPM: 6.1
Std nTPM: 5.9
Median nTPM: 13.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 40.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 35.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 34.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 32.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 29.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 28.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 28.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 27.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 26.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 23.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 22.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.8
FF:10158-103A5 76 years, female 69.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.9
Samples: 4

Max nTPM: 80.5
Min nTPM: 49.5
Sample A Female 49.5
Sample B Female 80.5
Sample C Male 55.4
Sample D Male 58.2
Midbrain
nTPM: 51.1
Samples: 4

Max nTPM: 66.5
Min nTPM: 38.2
Sample A Female 66.5
Sample B Female 38.2
Sample C Male 54.3
Sample D Male 45.5
Periaqueductal gray
nTPM: 42.5
Samples: 3

Max nTPM: 47.8
Min nTPM: 39.3
Sample B Female 40.3
Sample C Male 47.8
Sample D Male 39.3
Superior colliculi
nTPM: 51.7
Samples: 4

Max nTPM: 54.2
Min nTPM: 48.4
Sample A Female 53.8
Sample B Female 54.2
Sample C Male 48.4
Sample D Male 50.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.8
Samples: 4

Max nTPM: 37.5
Min nTPM: 33.3
Sample A Male 33.3
Sample B Male 35.7
Sample C Female 36.7
Sample D Female 37.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
355892 Antisense, RP_040617_01_F11, Mouse strain C57BL/6J (56 days, male) 6.8
68269039 Antisense, RP_041208_01_F02, Mouse strain C57BL/6J (56 days, male) 0.4

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