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ABLIM3
HPA
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                                        • ABLIM3
                                        TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
                                        ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
                                        ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
                                        ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
                                        SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                        ANTIBODIES
                                        AND
                                        VALIDATION
                                        Dictionary
                                        Small intestine
                                        Tissue proteome
                                        Intestine
                                        SMALL INTESTINE - Expression summary
                                        Protein expression
                                        Small intestinei

                                        On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                        Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                        If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                        h
                                        m
                                        l
                                        n
                                        Glandular cells: Medium
                                        RNA expressioni

                                        A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                        The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                        Scroll down to view mRNA expression data in more detail.
                                        Consensus:7.5 nTPM
                                        HPA:3.8 nTPM
                                        GTEx:7.5 nTPM
                                        FANTOM5:17.2 Scaled Tags Per Million

                                        SMALL INTESTINE - Antibody stainingi

                                        Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

                                        Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

                                        Antibody HPA003245
                                        Glandular cells Medium



                                        SMALL INTESTINE - HPA RNA-seqi

                                        The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

                                        Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
                                        Average nTPMi

                                        Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                        3.8
                                        overview
                                        Male, age 65
                                        Small intestine sample 232
                                        nTPM: 3.4
                                        Cell types%
                                        Glandular cells:
                                        55

                                        Smooth muscle cells:
                                        5

                                        Other cell types:
                                        40

                                        overview
                                        Male, age 39
                                        Small intestine sample 233
                                        nTPM: 4.1
                                        Cell types%
                                        Glandular cells:
                                        40

                                        Smooth muscle cells:
                                        5

                                        Other cell types:
                                        55

                                        overview
                                        Male, age 68
                                        Small intestine sample 234
                                        nTPM: 4.2
                                        Cell types%
                                        Glandular cells:
                                        30

                                        Smooth muscle cells:
                                        15

                                        Other cell types:
                                        55

                                        N/A
                                        Male, age 85
                                        Small intestine sample 235
                                        nTPM: 3.5

                                        SMALL INTESTINE - GTEx RNA-seqi

                                        RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                        Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                        Max subtype nTPMi

                                        Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                        7.5
                                        GTEx sample id Sample description nTPM
                                        4.66.19.52.616.70510152025303540
                                        4.66.19.52.616.70510152025303540
                                        Small Intestine - Terminal Ileum
                                        Average nTPM: 7.5
                                        Samples: 187

                                        Max nTPM: 44.1
                                        Min nTPM: 2.6
                                        Std nTPM: 4.8
                                        Median nTPM: 6.1
                                        GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 44.1
                                        GTEX-Y111-2226-SM-4SOJB 50-59 years, male 23.8
                                        GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 22.9
                                        GTEX-1192X-2526-SM-59868 50-59 years, male 21.4
                                        GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 20.0
                                        GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 16.9
                                        GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 16.7
                                        GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 16.6
                                        GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 16.5
                                        GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 15.9
                                        GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 15.4
                                        GTEX-1C64O-2526-SM-79ONO 60-69 years, male 15.3
                                        GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 15.1
                                        GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 14.9
                                        GTEX-13O21-1026-SM-5IJDU 50-59 years, male 14.3
                                        GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 14.0
                                        GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 13.3
                                        GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 12.8
                                        GTEX-117YX-0326-SM-5GICL 50-59 years, male 12.6
                                        GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 12.5
                                        GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 12.2
                                        GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 12.1
                                        GTEX-17KNJ-1626-SM-718AL 50-59 years, male 11.9
                                        GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 11.7
                                        GTEX-XMK1-1826-SM-4B66F 40-49 years, male 11.6
                                        GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 11.6
                                        GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 11.6
                                        GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 11.5
                                        GTEX-1497J-1926-SM-5TDCC 60-69 years, male 11.4
                                        GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 11.3
                                        GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 11.3
                                        GTEX-131XE-0926-SM-5HL7J 50-59 years, male 11.2
                                        GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 11.1
                                        GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 11.0
                                        GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 10.7
                                        GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 10.7
                                        GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 10.4
                                        GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 10.4
                                        GTEX-13111-1426-SM-5DUW3 50-59 years, male 10.3
                                        GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 10.3
                                        GTEX-WFON-1526-SM-4LVMP 40-49 years, male 10.2
                                        GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 10.1
                                        GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 10.0
                                        GTEX-14PJ3-1326-SM-664O7 50-59 years, male 9.9
                                        GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 9.8
                                        GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 9.8
                                        GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 9.7
                                        GTEX-133LE-1426-SM-5IFH1 20-29 years, female 9.3
                                        GTEX-16A39-1426-SM-6LLI6 30-39 years, female 8.9
                                        GTEX-145ME-0926-SM-5O9AR 40-49 years, female 8.8
                                        GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 8.8
                                        GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 8.7
                                        GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 8.5
                                        GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 8.5
                                        GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 8.4
                                        GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 8.4
                                        GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 8.4
                                        GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 8.2
                                        GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 8.0
                                        GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 7.7
                                        GTEX-13113-1226-SM-5EGHT 60-69 years, female 7.5
                                        GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 7.5
                                        GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 7.5
                                        GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 7.4
                                        GTEX-XPVG-1726-SM-4B65W 50-59 years, male 7.4
                                        GTEX-Y114-1426-SM-4TT6W 50-59 years, female 7.4
                                        GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 7.4
                                        GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 7.2
                                        GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 7.2
                                        GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 7.0
                                        GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 7.0
                                        GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 6.9
                                        GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 6.9
                                        GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 6.9
                                        GTEX-139T6-1026-SM-5IJGC 50-59 years, male 6.8
                                        GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 6.8
                                        GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 6.8
                                        GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 6.7
                                        GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 6.7
                                        GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 6.6
                                        GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 6.6
                                        GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 6.5
                                        GTEX-WFG7-1726-SM-4LVME 20-29 years, male 6.5
                                        GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 6.5
                                        GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 6.5
                                        GTEX-131XG-1726-SM-5LZUR 50-59 years, female 6.4
                                        GTEX-14PJN-0826-SM-686ZL 30-39 years, male 6.3
                                        GTEX-183FY-1626-SM-793D8 20-29 years, male 6.3
                                        GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 6.3
                                        GTEX-17HHE-1726-SM-79OKT 50-59 years, male 6.2
                                        GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 6.2
                                        GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 6.2
                                        GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 6.1
                                        GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 6.1
                                        GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 6.0
                                        GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 6.0
                                        GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 6.0
                                        GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 6.0
                                        GTEX-11P82-0826-SM-5P9GU 20-29 years, male 5.9
                                        GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 5.9
                                        GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 5.9
                                        GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 5.9
                                        GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 5.9
                                        GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 5.8
                                        GTEX-1C475-1426-SM-793CH 40-49 years, female 5.8
                                        GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 5.7
                                        GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 5.7
                                        GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 5.6
                                        GTEX-144GM-1026-SM-79OKU 20-29 years, male 5.6
                                        GTEX-14PKU-1626-SM-6871C 40-49 years, female 5.6
                                        GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 5.6
                                        GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 5.6
                                        GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 5.6
                                        GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 5.5
                                        GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 5.5
                                        GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 5.5
                                        GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 5.4
                                        GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 5.4
                                        GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 5.4
                                        GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 5.4
                                        GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 5.3
                                        GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 5.2
                                        GTEX-X15G-1426-SM-4PQZK 50-59 years, female 5.2
                                        GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 5.2
                                        GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 5.2
                                        GTEX-11TUW-1926-SM-5BC58 60-69 years, male 5.1
                                        GTEX-1399R-2026-SM-5K7WN 30-39 years, male 5.1
                                        GTEX-139YR-2226-SM-5IFFW 50-59 years, male 5.1
                                        GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 5.1
                                        GTEX-YFCO-1326-SM-664NV 40-49 years, male 5.1
                                        GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 5.1
                                        GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 5.0
                                        GTEX-11P7K-1626-SM-5GU63 30-39 years, male 4.8
                                        GTEX-XBED-1426-SM-4AT4G 60-69 years, male 4.8
                                        GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 4.8
                                        GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 4.8
                                        GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 4.7
                                        GTEX-ZTSS-0926-SM-59865 40-49 years, male 4.7
                                        GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 4.7
                                        GTEX-11DXX-1626-SM-5H11H 60-69 years, female 4.6
                                        GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 4.6
                                        GTEX-YEC4-1726-SM-4W21E 40-49 years, male 4.6
                                        GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 4.5
                                        GTEX-13O61-1326-SM-5KM31 60-69 years, male 4.4
                                        GTEX-145LT-1026-SM-5LU9O 40-49 years, male 4.4
                                        GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 4.4
                                        GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 4.3
                                        GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 4.3
                                        GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 4.3
                                        GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 4.2
                                        GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 4.1
                                        GTEX-14PK6-1626-SM-6871I 70-79 years, female 4.1
                                        GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 4.1
                                        GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 4.0
                                        GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 4.0
                                        GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 4.0
                                        GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 4.0
                                        GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 4.0
                                        GTEX-11EQ9-1326-SM-5985X 30-39 years, male 3.9
                                        GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 3.9
                                        GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 3.9
                                        GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 3.8
                                        GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3.8
                                        GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 3.8
                                        GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 3.8
                                        GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3.7
                                        GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 3.7
                                        GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 3.6
                                        GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 3.6
                                        GTEX-1AMFI-1926-SM-731F2 50-59 years, female 3.5
                                        GTEX-1122O-1326-SM-5H11F 60-69 years, female 3.4
                                        GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 3.4
                                        GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 3.3
                                        GTEX-111YS-1426-SM-5GID8 60-69 years, male 3.2
                                        GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 3.2
                                        GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 3.2
                                        GTEX-1399S-2026-SM-5KM4B 30-39 years, female 3.1
                                        GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 3.1
                                        GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 3.0
                                        GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2.9
                                        GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2.9
                                        GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 2.9
                                        GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 2.9
                                        GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2.8
                                        GTEX-14PN3-2026-SM-68729 60-69 years, female 2.7
                                        GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2.6
                                        GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2.6
                                        Show allShow less

                                        SMALL INTESTINE - FANTOM5 CAGEi

                                        RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                        Max subtype Scaled Tags Per Millioni

                                        Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

                                        17.2
                                        FANTOM5 sample id Sample description Scaled Tags Per Million
                                        Small intestine
                                        Scaled Tags Per Million: 17.2
                                        FF:10024-101D6 15,40,85 years, mixed 17.2

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