We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMCC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
294.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
226.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
216.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
181.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
143.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
135.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
128.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
122.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
119.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
118.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
114.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
113.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
101.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
94.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
88.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
86.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
83.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
83.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
70.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
69.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
68.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
68.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
68.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
67.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
61.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
60.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
59.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
59.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
57.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
55.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
54.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
54.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
54.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
54.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
53.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
52.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
52.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
52.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
51.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
51.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
50.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
49.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
49.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
49.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
49.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
46.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
44.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
44.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
42.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
40.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
38.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
36.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
35.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
34.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
32.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
31.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMCC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.0
Number of samples
231
Samples
Sample
Description
TPM
DO45131
0 years, male, NA, stage:4, dead, 360 days
45.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
36.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
1.5
477
Tumor
1.4
533
Tumor
1.1
981
Tumor
1.1
1041
Tumor
1.0
257
Tumor
1.0
331
Tumor
1.0
915
Tumor
0.9
313
Tumor
0.9
222
Normal
0.9
745
Tumor
0.9
297
Tumor
0.8
741
Tumor
0.8
911
Tumor
0.7
147
Tumor
0.7
135
Tumor
0.7
387
Tumor
0.7
221
Tumor
0.7
217
Tumor
0.7
267
Tumor
0.6
925
Tumor
0.6
663
Tumor
0.6
953
Tumor
0.6
375
Tumor
0.6
278
Normal
0.6
665
Tumor
0.6
473
Tumor
0.6
451
Tumor
0.6
145
Tumor
0.5
491
Tumor
0.5
867
Tumor
0.5
218
Normal
0.5
1015
Tumor
0.5
573
Tumor
0.5
913
Tumor
0.5
123
Tumor
0.5
537
Tumor
0.4
525
Tumor
0.4
191
Tumor
0.4
214
Normal
0.4
1027
Tumor
0.4
231
Tumor
0.4
131
Tumor
0.4
195
Tumor
0.4
685
Tumor
0.4
865
Tumor
0.4
361
Tumor
0.4
196
Normal
0.4
213
Tumor
0.4
391
Tumor
0.4
481
Tumor
0.3
513
Tumor
0.3
113
Tumor
0.3
327
Tumor
0.3
431
Tumor
0.3
261
Tumor
0.3
558
Normal
0.3
415
Tumor
0.3
314
Normal
0.3
368
Normal
0.3
311
Tumor
0.3
427
Tumor
0.3
298
Normal
0.3
615
Tumor
0.3
944
Normal
0.3
376
Normal
0.3
517
Tumor
0.3
312
Normal
0.2
137
Tumor
0.2
857
Tumor
0.2
1014
Normal
0.2
426
Normal
0.2
285
Tumor
0.2
524
Normal
0.2
982
Normal
0.2
715
Tumor
0.2
125
Tumor
0.2
918
Normal
0.2
916
Normal
0.2
568
Normal
0.2
493
Tumor
0.2
127
Tumor
0.2
955
Tumor
0.2
478
Normal
0.2
366
Normal
0.2
863
Tumor
0.2
161
Tumor
0.2
112
Tumor
0.2
1026
Normal
0.2
423
Tumor
0.2
192
Normal
0.2
332
Normal
0.1
574
Normal
0.1
1016
Normal
0.1
926
Normal
0.1
492
Normal
0.1
1044
Normal
0.1
367
Tumor
0.1
452
Normal
0.1
435
Tumor
0.1
351
Tumor
0.1
433
Tumor
0.1
727
Tumor
0.1
617
Tumor
0.1
354
Normal
0.1
956
Normal
0.1
722
Normal
0.1
978
Normal
0.1
1028
Normal
0.1
977
Tumor
0.1
877
Tumor
0.1
572
Normal
0.1
424
Normal
0.1
714
Normal
0.1
466
Normal
0.1
554
Normal
0.1
557
Tumor
0.1
535
Tumor
0.1
355
Tumor
0.1
443
Tumor
0.1
422
Normal
0.1
616
Normal
0.1
1022
Normal
0.1
815
Tumor
0.1
448
Normal
0.1
474
Normal
0.1
868
Normal
0.1
494
Normal
0.1
414
Normal
0.0
526
Normal
0.0
563
Tumor
0.0
756
Normal
0.0
464
Normal
0.0
114
Normal
0.0
272
Normal
0.0
728
Normal
0.0
468
Normal
0.0
954
Normal
0.0
922
Normal
0.0
488
Normal
0.0
258
Normal
0.0
362
Normal
0.0
284
Normal
0.0
642
Normal
0.0
421
Tumor
0.0
951
Tumor
0.0
357
Tumor
0.0
342
Normal
0.0
1032
Normal
0.0
172
Normal
0.0
746
Normal
0.0
358
Normal
0.0
914
Normal
0.0
884
Normal
0.0
536
Normal
0.0
924
Normal
0.0
277
Tumor
0.0
384
Normal
0.0
1043
Tumor
0.0
968
Normal
0.0
984
Normal
0.0
286
Normal
0.0
428
Normal
0.0
912
Normal
0.0
365
Tumor
0.0
958
Normal
0.0
471
Tumor
0.0
388
Normal
0.0
538
Normal
0.0
514
Normal
0.0
141
Tumor
0.0
461
Tumor
0.0
456
Normal
0.0
964
Normal
0.0
484
Normal
0.0
723
Tumor
0.0
363
Tumor
0.0
976
Normal
0.0
1046
Normal
0.0
786
Normal
0.0
465
Tumor
0.0
874
Normal
0.0
393
Tumor
0.0
742
Normal
0.0
445
Tumor
0.0
864
Normal
0.0
212
Normal
0.0
917
Tumor
0.0
262
Normal
0.0
142
Normal
0.0
564
Normal
0.0
755
Tumor
0.0
395
Tumor
0.0
396
Normal
-0.1
851
Tumor
-0.1
472
Normal
-0.1
186
Normal
-0.1
882
Normal
-0.1
817
Tumor
-0.1
883
Tumor
-0.1
983
Tumor
-0.1
138
Normal
-0.1
527
Tumor
-0.1
136
Normal
-0.1
132
Normal
-0.1
228
Normal
-0.1
938
Normal
-0.1
498
Normal
-0.1
1013
Tumor
-0.1
921
Tumor
-0.1
171
Tumor
-0.1
861
Tumor
-0.1
553
Tumor
-0.1
434
Normal
-0.1
744
Normal
-0.1
232
Normal
-0.1
1025
Tumor
-0.1
328
Normal
-0.1
878
Normal
-0.1
862
Normal
-0.1
966
Normal
-0.1
162
Normal
-0.1
446
Normal
-0.1
1042
Normal
-0.1
785
Tumor
-0.1
518
Normal
-0.1
187
Tumor
-0.1
571
Tumor
-0.1
432
Normal
-0.1
636
Normal
-0.1
738
Normal
-0.1
952
Normal
-0.1
436
Normal
-0.1
148
Normal
-0.1
444
Normal
-0.1
534
Normal
-0.1
546
Normal
-0.1
392
Normal
-0.1
662
Normal
-0.1
482
Normal
-0.1
353
Tumor
-0.1
124
Normal
-0.1
188
Normal
-0.1
515
Tumor
-0.1
716
Normal
-0.1
724
Normal
-0.1
385
Tumor
-0.1
823
Tumor
-0.1
268
Normal
-0.1
721
Tumor
-0.1
447
Tumor
-0.1
412
Normal
-0.1
146
Normal
-0.1
672
Normal
-0.2
686
Normal
-0.2
416
Normal
-0.2
516
Normal
-0.2
698
Normal
-0.2
866
Normal
-0.2
356
Normal
-0.2
696
Normal
-0.2
695
Tumor
-0.2
778
Normal
-0.2
344
Normal
-0.2
462
Normal
-0.2
923
Tumor
-0.2
814
Normal
-0.2
394
Normal
-0.2
364
Normal
-0.2
224
Normal
-0.2
111
Normal
-0.2
126
Normal
-0.2
483
Tumor
-0.2
386
Normal
-0.2
627
Tumor
-0.2
777
Tumor
-0.2
852
Normal
-0.2
283
Tumor
-0.2
383
Tumor
-0.2
963
Tumor
-0.2
463
Tumor
-0.2
816
Normal
-0.2
455
Tumor
-0.2
185
Tumor
-0.2
523
Tumor
-0.2
223
Tumor
-0.2
648
Normal
-0.2
824
Normal
-0.2
713
Tumor
-0.3
664
Normal
-0.3
1021
Tumor
-0.3
937
Tumor
-0.3
697
Tumor
-0.3
1045
Tumor
-0.3
628
Normal
-0.3
467
Tumor
-0.3
943
Tumor
-0.3
873
Tumor
-0.3
1031
Tumor
-0.3
211
Tumor
-0.3
497
Tumor
-0.3
858
Normal
-0.3
545
Tumor
-0.3
881
Tumor
-0.3
271
Tumor
-0.3
528
Normal
-0.3
352
Normal
-0.3
671
Tumor
-0.3
666
Normal
-0.3
128
Normal
-0.3
965
Tumor
-0.4
413
Tumor
-0.4
618
Normal
-0.4
957
Tumor
-0.4
818
Normal
-0.4
661
Tumor
-0.4
641
Tumor
-0.5
341
Tumor
-0.5
737
Tumor
-0.5
975
Tumor
-0.6
487
Tumor
-0.6
813
Tumor
-0.6
227
Tumor
-0.6
411
Tumor
-0.6
343
Tumor
-0.7
647
Tumor
-0.7
743
Tumor
-0.7
635
Tumor
-0.8
967
Tumor
-0.8
425
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
