MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.3 nTPM
HPA Brain:60.3 nTPM
GTEx:23.3 nTPM
FANTOM5:128.9 Scaled Tags Per Million
Pig:60.5 nTPM
Mouse:34.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.3
1870 Female, age 42, unknown 62.8
2019 Male, age 18, unknown 58.7
2411 Female, age 72, unknown 56.3
1830 Male, age 51, unknown 55.9
1833 Male, age 53, unknown 54.4
2828 Female, age 72, unknown 49.1
1827 Male, age 72, unknown 47.2
2666 Male, age 74, left hemisphere 43.7
2586 Male, age 75, left hemisphere 43.5
2219 Male, age 76, both hemispheres 41.2
Dorsal raphe nucleus
nTPM: 46.5
2016 Female, age 72, unknown 52.2
2750 Male, age 76, both hemispheres 51.4
1828 Male, age 53, unknown 46.2
2298 Female, age 72, unknown 42.1
2047 Male, age 72, unknown 40.8
Inferior colliculus
nTPM: 49.0
2097 Female, age 72, unknown 52.0
1890 Male, age 53, unknown 49.5
1848 Female, age 42, unknown 48.7
2849 Male, age 72, unknown 45.8
Median raphe nucleus
nTPM: 42.7
2220 Male, age 76, midline 42.7
Periaquaductal grey, anterior
nTPM: 47.4
2502 Female, age 75, unknown 53.7
1947 Male, age 18, unknown 48.4
1795 Male, age 51, unknown 40.1
Periaquaductal grey, dorsal
nTPM: 47.9
2464 Female, age 72, unknown 50.1
1831 Male, age 72, unknown 48.5
2850 Male, age 76, both hemispheres 48.4
1840 Male, age 53, unknown 44.4
Periaquaductal grey, lateral
nTPM: 43.6
2140 Male, age 76, both hemispheres 47.8
2053 Male, age 18, unknown 42.8
2272 Male, age 74, both hemispheres 40.2
Pretectal area
nTPM: 47.0
1815 Male, age 53, unknown 54.6
2316 Male, age 76, right hemisphere 51.4
2407 Male, age 75, both hemispheres 49.4
2667 Female, age 75, unknown 49.4
1817 Female, age 42, unknown 47.6
2273 Male, age 74, both hemispheres 47.1
2007 Male, age 72, unknown 45.1
2224 Female, age 72, unknown 44.7
2825 Male, age 18, unknown 43.5
1816 Male, age 51, unknown 42.5
1944 Female, age 72, unknown 42.0
Red nucleus
nTPM: 60.3
1865 Male, age 51, unknown 69.6
1904 Male, age 53, unknown 69.3
1821 Female, age 72, unknown 67.9
1954 Female, age 42, unknown 67.2
2503 Female, age 72, unknown 65.5
2769 Male, age 72, unknown 60.8
2227 Male, age 72, unknown 60.5
2823 Male, age 76, right hemisphere 59.3
2785 Male, age 18, unknown 58.9
2588 Male, age 74, left hemisphere 51.2
2725 Female, age 75, unknown 46.8
2584 Male, age 75, left hemisphere 46.3
Substantia nigra
nTPM: 48.0
2409 Female, age 72, unknown 56.1
1889 Female, age 72, unknown 51.8
2699 Male, age 18, unknown 50.5
2590 Female, age 75, unknown 49.5
1851 Male, age 51, unknown 48.5
2583 Male, age 75, right hemisphere 48.1
2241 Male, age 72, unknown 46.9
2665 Male, age 74, both hemispheres 43.9
1916 Female, age 42, unknown 42.2
1941 Male, age 53, unknown 42.0
Superior colliculus
nTPM: 50.6
1995 Male, age 72, unknown 66.0
1913 Female, age 42, unknown 62.6
1839 Male, age 51, unknown 51.5
2668 Female, age 75, unknown 51.4
2587 Male, age 74, left hemisphere 50.9
1895 Male, age 76, right hemisphere 49.2
2664 Male, age 75, both hemispheres 45.6
2261 Male, age 18, unknown 44.3
1796 Male, age 53, unknown 43.2
2087 Female, age 72, unknown 41.5
Ventral tegmental area
nTPM: 47.6
2410 Female, age 72, unknown 54.5
2223 Female, age 72, unknown 52.2
1915 Female, age 42, unknown 46.7
2021 Male, age 53, unknown 46.0
1942 Male, age 51, unknown 45.8
2218 Male, age 76, both hemispheres 40.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.3
Samples: 139

Max nTPM: 48.1
Min nTPM: 9.1
Std nTPM: 6.7
Median nTPM: 22.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 48.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 41.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 41.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 39.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 37.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 37.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 37.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 36.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 35.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 34.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 34.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 128.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.9
FF:10158-103A5 76 years, female 128.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.2
Samples: 4

Max nTPM: 66.5
Min nTPM: 49.4
Sample A Female 56.6
Sample B Female 52.2
Sample C Male 49.4
Sample D Male 66.5
Midbrain
nTPM: 60.5
Samples: 4

Max nTPM: 79.5
Min nTPM: 48.4
Sample A Female 79.5
Sample B Female 63.1
Sample C Male 51.1
Sample D Male 48.4
Periaqueductal gray
nTPM: 53.1
Samples: 3

Max nTPM: 55.3
Min nTPM: 49.2
Sample B Female 54.8
Sample C Male 49.2
Sample D Male 55.3
Superior colliculi
nTPM: 54.6
Samples: 4

Max nTPM: 57.9
Min nTPM: 50.1
Sample A Female 54.0
Sample B Female 50.1
Sample C Male 57.9
Sample D Male 56.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.8
Samples: 4

Max nTPM: 37.1
Min nTPM: 32.5
Sample A Male 35.6
Sample B Male 32.5
Sample C Female 37.1
Sample D Female 34.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
1895 Antisense, RP_040420_01_D12, Mouse strain C57BL/6J (56 days, male) 0.4
1894 Antisense, RP_040420_01_D12, Mouse strain C57BL/6J (56 days, male) 0.2

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