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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COPS9 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
107.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
573.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
353.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
340.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
332.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
328.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
317.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
311.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
301.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
297.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
284.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
284.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
261.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
259.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
258.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
244.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
242.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
240.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
221.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
218.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
217.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
212.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
205.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
202.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
198.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
197.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
196.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
195.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
193.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
182.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
182.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
181.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
178.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
176.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
175.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
173.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
172.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
171.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
169.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
167.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
165.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
165.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
163.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
163.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
161.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
160.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
159.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
159.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
159.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
159.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
157.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
157.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
157.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
155.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
155.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
155.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
155.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
154.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
152.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
149.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
148.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
147.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
146.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
144.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
142.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
141.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
140.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
140.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
139.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
139.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
138.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
138.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
137.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
136.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
136.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
136.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
134.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
134.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
134.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
134.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
134.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
133.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
133.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
131.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
131.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
129.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
129.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
129.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
128.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
128.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
128.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
128.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
126.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
126.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
125.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
125.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
125.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
124.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
124.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
123.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
123.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
123.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
123.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
123.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
121.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
121.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
120.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
119.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
118.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
118.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
117.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
116.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
116.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
116.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
114.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
114.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
114.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
113.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
113.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
112.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
112.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
110.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
110.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
110.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
110.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
109.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
108.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
108.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
108.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
108.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
107.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
107.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
107.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
106.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
105.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
105.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
104.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
103.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
103.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
102.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
102.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
102.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
102.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
102.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
102.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
102.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
102.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
102.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
101.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
101.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
100.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
99.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
99.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
98.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
98.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
98.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
98.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
97.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
97.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
97.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
97.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
96.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
96.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
95.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
95.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
95.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
95.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
94.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
94.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
94.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
94.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
94.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
94.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
93.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
93.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
93.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
93.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
92.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
92.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
92.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
92.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
92.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
92.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
92.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
92.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
92.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
91.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
91.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
91.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
90.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
90.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
90.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
89.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
89.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
89.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
89.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
88.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
88.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
88.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
88.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
87.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
87.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
86.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
86.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
86.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
85.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
85.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
85.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
85.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
85.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
85.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
84.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
84.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
84.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
83.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
82.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
82.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
82.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
82.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
81.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
81.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
81.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
80.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
79.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
79.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
79.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
79.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
79.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
78.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
78.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
78.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
78.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
78.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
77.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
77.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
77.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
77.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
77.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
77.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
76.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
76.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
75.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
75.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
75.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
75.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
75.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
75.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
74.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
74.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
73.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
73.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
73.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
72.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
72.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
72.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
72.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
71.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
71.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
71.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
71.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
70.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
70.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
70.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
70.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
70.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
69.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
69.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
69.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
69.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
69.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
68.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
68.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
68.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
68.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
68.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
68.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
68.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
68.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
67.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
67.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
67.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
67.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
67.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
66.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
66.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
66.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
65.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
65.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
64.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
64.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
64.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
64.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
64.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
64.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
64.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
63.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
63.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
63.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
63.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
63.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
62.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
62.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
62.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
62.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
62.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
61.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
61.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
61.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
61.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
61.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
61.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
60.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
60.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
59.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
59.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
59.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
59.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
59.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
58.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
58.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
58.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
58.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
58.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
58.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
58.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
58.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
58.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
57.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
56.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
56.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
56.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
55.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
55.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
53.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
53.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
51.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
51.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
51.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
51.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
51.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
50.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
50.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
49.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
49.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
49.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
47.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
47.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
47.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
47.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
44.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
43.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
43.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
42.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
41.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
41.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
41.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
40.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
38.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
36.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
34.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.