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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYNPO is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
106.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
103.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
91.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
81.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
73.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
71.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
70.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
67.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
65.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
63.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
63.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
63.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
60.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
60.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
59.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
52.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
50.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
49.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
47.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
46.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
45.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
44.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
44.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
43.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
42.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
42.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
41.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
39.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
38.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
38.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
36.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
36.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
36.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
36.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
35.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
33.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
32.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
28.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYNPO is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.4
Number of samples
231
Samples
Sample
Description
TPM
DO48717
0 years, male, NA, stage:4, dead, 180 days
62.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
62.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
56.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
54.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
49.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
47.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
47.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
45.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
45.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
44.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
41.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
41.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
41.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
41.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
37.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
37.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
36.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
35.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
32.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
31.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
30.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
30.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
24.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.0
353
Tumor
1.0
913
Tumor
1.0
533
Tumor
1.0
327
Tumor
0.9
777
Tumor
0.9
911
Tumor
0.8
617
Tumor
0.8
383
Tumor
0.8
745
Tumor
0.7
1045
Tumor
0.7
823
Tumor
0.7
863
Tumor
0.7
498
Normal
0.7
527
Tumor
0.7
937
Tumor
0.6
461
Tumor
0.6
427
Tumor
0.6
137
Tumor
0.6
515
Tumor
0.6
513
Tumor
0.6
415
Tumor
0.6
916
Normal
0.6
721
Tumor
0.6
852
Normal
0.6
365
Tumor
0.5
1027
Tumor
0.5
921
Tumor
0.5
481
Tumor
0.5
536
Normal
0.5
955
Tumor
0.5
785
Tumor
0.5
545
Tumor
0.5
478
Normal
0.5
861
Tumor
0.5
1028
Normal
0.5
647
Tumor
0.5
455
Tumor
0.5
192
Normal
0.5
867
Tumor
0.5
915
Tumor
0.5
524
Normal
0.5
737
Tumor
0.5
223
Tumor
0.5
982
Normal
0.5
857
Tumor
0.5
958
Normal
0.5
881
Tumor
0.5
563
Tumor
0.4
1041
Tumor
0.4
538
Normal
0.4
868
Normal
0.4
187
Tumor
0.4
1044
Normal
0.4
641
Tumor
0.4
814
Normal
0.4
341
Tumor
0.4
492
Normal
0.4
874
Normal
0.4
473
Tumor
0.4
161
Tumor
0.4
284
Normal
0.4
141
Tumor
0.4
727
Tumor
0.4
884
Normal
0.4
924
Normal
0.3
1042
Normal
0.3
722
Normal
0.3
978
Normal
0.3
813
Tumor
0.3
191
Tumor
0.3
558
Normal
0.3
685
Tumor
0.3
918
Normal
0.3
698
Normal
0.3
944
Normal
0.3
943
Tumor
0.3
728
Normal
0.3
444
Normal
0.3
497
Tumor
0.3
968
Normal
0.3
952
Normal
0.3
557
Tumor
0.3
1025
Tumor
0.3
416
Normal
0.3
615
Tumor
0.3
474
Normal
0.3
642
Normal
0.3
1043
Tumor
0.3
865
Tumor
0.3
975
Tumor
0.3
554
Normal
0.3
926
Normal
0.3
516
Normal
0.3
956
Normal
0.3
483
Tumor
0.3
786
Normal
0.3
421
Tumor
0.3
746
Normal
0.3
977
Tumor
0.3
328
Normal
0.2
571
Tumor
0.2
487
Tumor
0.2
723
Tumor
0.2
355
Tumor
0.2
375
Tumor
0.2
212
Normal
0.2
477
Tumor
0.2
696
Normal
0.2
917
Tumor
0.2
528
Normal
0.2
553
Tumor
0.2
572
Normal
0.2
818
Normal
0.2
984
Normal
0.2
1032
Normal
0.2
1022
Normal
0.2
922
Normal
0.2
213
Tumor
0.2
716
Normal
0.2
433
Tumor
0.2
672
Normal
0.2
195
Tumor
0.2
697
Tumor
0.2
663
Tumor
0.2
925
Tumor
0.2
434
Normal
0.2
923
Tumor
0.2
297
Tumor
0.2
1026
Normal
0.2
448
Normal
0.2
494
Normal
0.2
214
Normal
0.2
472
Normal
0.2
362
Normal
0.2
966
Normal
0.2
447
Tumor
0.2
364
Normal
0.2
574
Normal
0.2
526
Normal
0.2
744
Normal
0.2
484
Normal
0.2
873
Tumor
0.2
816
Normal
0.2
546
Normal
0.2
914
Normal
0.2
268
Normal
0.2
126
Normal
0.2
518
Normal
0.2
514
Normal
0.2
135
Tumor
0.2
488
Normal
0.2
742
Normal
0.2
311
Tumor
0.2
1016
Normal
0.2
636
Normal
0.1
113
Tumor
0.1
386
Normal
0.1
981
Tumor
0.1
188
Normal
0.1
564
Normal
0.1
714
Normal
0.1
257
Tumor
0.1
312
Normal
0.1
1015
Tumor
0.1
451
Tumor
0.1
741
Tumor
0.1
862
Normal
0.1
864
Normal
0.1
715
Tumor
0.1
738
Normal
0.1
756
Normal
0.1
755
Tumor
0.1
468
Normal
0.1
218
Normal
0.1
136
Normal
0.1
1046
Normal
0.1
465
Tumor
0.1
384
Normal
0.1
866
Normal
0.1
145
Tumor
0.1
525
Tumor
0.1
938
Normal
0.1
224
Normal
0.1
466
Normal
0.1
452
Normal
0.1
493
Tumor
0.1
363
Tumor
0.1
456
Normal
0.1
628
Normal
0.1
368
Normal
0.1
664
Normal
0.1
231
Tumor
0.1
686
Normal
0.1
976
Normal
0.1
354
Normal
0.1
393
Tumor
0.1
147
Tumor
0.1
662
Normal
0.1
361
Tumor
0.1
568
Normal
0.1
185
Tumor
0.1
713
Tumor
0.1
534
Normal
0.1
412
Normal
0.1
964
Normal
0.0
396
Normal
0.0
817
Tumor
0.0
232
Normal
0.0
824
Normal
0.0
878
Normal
0.0
535
Tumor
0.0
778
Normal
0.0
858
Normal
0.0
261
Tumor
0.0
262
Normal
0.0
951
Tumor
0.0
491
Tumor
0.0
366
Normal
0.0
258
Normal
0.0
567
Tumor
0.0
616
Normal
0.0
464
Normal
0.0
957
Tumor
0.0
286
Normal
0.0
882
Normal
0.0
138
Normal
0.0
1014
Normal
0.0
436
Normal
0.0
422
Normal
0.0
392
Normal
0.0
666
Normal
0.0
963
Tumor
0.0
146
Normal
0.0
471
Tumor
0.0
411
Tumor
0.0
1013
Tumor
0.0
648
Normal
0.0
446
Normal
0.0
482
Normal
0.0
356
Normal
-0.1
523
Tumor
-0.1
376
Normal
-0.1
114
Normal
-0.1
426
Normal
-0.1
111
Normal
-0.1
132
Normal
-0.1
142
Normal
-0.1
272
Normal
-0.1
344
Normal
-0.1
467
Tumor
-0.1
912
Normal
-0.1
278
Normal
-0.1
277
Tumor
-0.1
228
Normal
-0.1
954
Normal
-0.1
883
Tumor
-0.1
428
Normal
-0.1
1031
Tumor
-0.1
423
Tumor
-0.1
124
Normal
-0.1
394
Normal
-0.1
222
Normal
-0.1
298
Normal
-0.1
162
Normal
-0.2
217
Tumor
-0.2
462
Normal
-0.2
424
Normal
-0.2
395
Tumor
-0.2
618
Normal
-0.2
635
Tumor
-0.2
267
Tumor
-0.2
414
Normal
-0.2
221
Tumor
-0.2
388
Normal
-0.2
211
Tumor
-0.2
148
Normal
-0.2
352
Normal
-0.2
953
Tumor
-0.2
313
Tumor
-0.2
186
Normal
-0.2
983
Tumor
-0.2
172
Normal
-0.3
432
Normal
-0.3
171
Tumor
-0.3
128
Normal
-0.3
965
Tumor
-0.3
671
Tumor
-0.3
445
Tumor
-0.3
695
Tumor
-0.3
332
Normal
-0.3
443
Tumor
-0.3
387
Tumor
-0.3
196
Normal
-0.4
343
Tumor
-0.4
342
Normal
-0.4
314
Normal
-0.4
517
Tumor
-0.4
431
Tumor
-0.4
358
Normal
-0.4
967
Tumor
-0.4
331
Tumor
-0.4
123
Tumor
-0.4
537
Tumor
-0.4
851
Tumor
-0.5
413
Tumor
-0.5
127
Tumor
-0.5
385
Tumor
-0.5
271
Tumor
-0.5
1021
Tumor
-0.5
665
Tumor
-0.6
463
Tumor
-0.6
877
Tumor
-0.6
573
Tumor
-0.7
112
Tumor
-0.7
227
Tumor
-0.7
743
Tumor
-0.8
425
Tumor
-0.8
131
Tumor
-0.8
724
Normal
-0.8
357
Tumor
-0.9
435
Tumor
-0.9
391
Tumor
-0.9
283
Tumor
-0.9
351
Tumor
-0.9
125
Tumor
-0.9
367
Tumor
-1.0
661
Tumor
-1.2
285
Tumor
-1.3
815
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
