We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGAM1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
106.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
591.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
347.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
336.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
297.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
267.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
254.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
228.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
224.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
206.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
204.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
204.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
201.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
195.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
192.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
192.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
189.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
189.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
188.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
184.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
182.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
182.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
181.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
180.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
178.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
178.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
177.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
176.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
175.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
174.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
174.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
174.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
173.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
171.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
171.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
168.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
168.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
168.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
167.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
167.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
167.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
165.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
164.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
164.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
162.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
162.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
161.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
161.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
161.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
160.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
159.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
159.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
155.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
155.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
152.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
152.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
149.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
148.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
147.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
145.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
144.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
143.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
142.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
142.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
141.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
141.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
141.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
141.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
140.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
139.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
139.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
139.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
139.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
138.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
137.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
137.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
137.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
136.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
136.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
136.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
136.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
135.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
135.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
134.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
134.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
133.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
133.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
132.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
131.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
130.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
129.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
128.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
128.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
128.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
127.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
126.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
125.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
125.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
125.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
125.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
125.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
125.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
124.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
123.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
121.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
121.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
121.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
121.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
120.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
120.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
120.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
119.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
119.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
118.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
117.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
117.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
117.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
117.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
116.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
116.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
116.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
115.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
115.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
114.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
113.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
113.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
113.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
112.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
112.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
112.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
112.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
111.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
110.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
110.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
110.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
110.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
109.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
109.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
109.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
108.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
108.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
108.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
108.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
107.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
107.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
107.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
107.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
107.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
106.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
106.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
106.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
106.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
105.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
104.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
104.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
104.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
104.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
103.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
102.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
102.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
102.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
102.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
102.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
102.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
102.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
102.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
102.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
101.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
101.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
101.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
101.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
101.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
100.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
100.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
100.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
100.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
100.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
100.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
99.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
99.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
99.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
99.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
98.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
98.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
98.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
98.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
98.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
98.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
97.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
97.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
97.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
97.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
96.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
96.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
95.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
95.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
94.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
94.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
94.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
94.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
93.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
93.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
93.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
93.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
92.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
91.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
91.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
91.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
91.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
90.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
89.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
89.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
89.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
89.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
88.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
88.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
88.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
88.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
88.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
88.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
87.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
87.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
87.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
87.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
86.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
85.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
85.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
85.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
84.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
84.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
84.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
83.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
83.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
82.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
82.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
82.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
82.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
81.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
81.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
81.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
81.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
81.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
80.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
80.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
80.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
79.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
79.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
79.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
78.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
78.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
78.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
78.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
78.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
77.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
77.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
77.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
77.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
77.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
77.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
76.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
76.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
75.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
75.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
75.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
75.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
75.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
74.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
74.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
74.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
74.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
74.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
73.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
72.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
72.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
71.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
71.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
70.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
70.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
70.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
70.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
70.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
70.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
69.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
69.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
69.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
68.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
68.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
67.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
67.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
67.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
66.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
66.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
66.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
66.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
65.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
65.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
64.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
64.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
63.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
63.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
63.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
63.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
62.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
62.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
61.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
61.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
61.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
60.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
60.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
59.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
58.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
58.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
58.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
58.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
57.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
57.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
57.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
56.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
55.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
55.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
55.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
55.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
54.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
54.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
54.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
52.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
52.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
51.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
51.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
50.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
50.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
50.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
50.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
50.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
50.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
48.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
47.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
47.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
47.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
47.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
46.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
46.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
45.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
44.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
44.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
43.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
42.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
42.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
41.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
40.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
40.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
39.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
35.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
34.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
31.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
27.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
23.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGAM1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
73.5
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
511.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
297.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
245.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
236.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
234.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
208.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
207.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
200.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
194.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
165.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
159.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
158.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
145.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
142.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
137.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
136.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
135.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
134.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
134.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
126.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
121.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
112.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
111.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
109.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
108.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
104.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
103.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
103.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
103.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
101.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
101.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
100.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
99.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
98.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
97.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
97.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
96.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
95.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
94.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
93.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
91.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
91.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
90.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
90.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
89.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
89.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
89.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
88.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
88.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
88.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
88.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
87.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
85.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
85.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
85.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
84.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
84.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
84.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
83.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
83.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
83.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
82.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
81.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
80.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
80.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
80.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
80.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
79.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
79.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
79.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
79.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
79.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
78.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
78.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
77.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
77.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
76.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
76.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
76.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
76.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
75.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
75.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
75.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
75.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
75.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
74.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
74.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
74.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
74.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
74.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
73.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
73.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
72.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
72.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
72.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
72.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
72.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
71.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
71.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
71.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
70.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
70.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
70.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
70.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
70.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
70.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
69.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
68.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
67.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
67.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
67.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
67.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
67.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
66.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
66.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
65.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
65.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
64.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
64.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
64.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
63.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
63.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
63.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
63.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
62.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
62.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
62.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
61.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
61.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
61.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
61.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
60.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
60.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
60.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
59.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
59.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
59.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
58.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
58.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
58.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
58.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
57.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
57.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
57.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
56.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
55.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
55.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
55.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
54.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
54.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
54.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
52.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
52.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
52.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
51.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
51.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
51.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
51.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
50.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
50.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
49.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
48.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
48.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
48.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
48.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
47.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
47.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
47.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
47.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
47.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
47.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
46.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
46.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
46.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
45.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
45.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
44.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
43.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
43.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
43.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
43.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
42.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
42.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
42.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
41.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
41.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
40.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
39.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
39.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
37.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
36.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
35.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
34.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
33.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
33.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
30.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
28.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.9
257
Tumor
0.7
685
Tumor
0.7
1045
Tumor
0.7
1022
Normal
0.6
436
Normal
0.6
484
Normal
0.6
481
Tumor
0.5
414
Normal
0.5
756
Normal
0.5
482
Normal
0.5
723
Tumor
0.5
698
Normal
0.5
518
Normal
0.5
858
Normal
0.5
714
Normal
0.5
955
Tumor
0.5
1026
Normal
0.5
824
Normal
0.4
1032
Normal
0.4
862
Normal
0.4
472
Normal
0.4
111
Normal
0.4
926
Normal
0.4
818
Normal
0.4
298
Normal
0.4
314
Normal
0.4
516
Normal
0.4
416
Normal
0.4
648
Normal
0.4
728
Normal
0.4
938
Normal
0.4
716
Normal
0.4
1042
Normal
0.4
222
Normal
0.4
464
Normal
0.4
394
Normal
0.4
746
Normal
0.4
466
Normal
0.4
462
Normal
0.4
546
Normal
0.4
386
Normal
0.4
172
Normal
0.4
745
Tumor
0.4
738
Normal
0.4
196
Normal
0.4
362
Normal
0.4
882
Normal
0.4
953
Tumor
0.4
982
Normal
0.3
228
Normal
0.3
978
Normal
0.3
922
Normal
0.3
162
Normal
0.3
924
Normal
0.3
218
Normal
0.3
1044
Normal
0.3
786
Normal
0.3
615
Tumor
0.3
966
Normal
0.3
432
Normal
0.3
944
Normal
0.3
1046
Normal
0.3
742
Normal
0.3
868
Normal
0.3
278
Normal
0.3
456
Normal
0.3
426
Normal
0.3
662
Normal
0.3
422
Normal
0.3
914
Normal
0.3
428
Normal
0.3
628
Normal
0.3
618
Normal
0.3
364
Normal
0.3
616
Normal
0.3
312
Normal
0.3
664
Normal
0.3
125
Tumor
0.3
212
Normal
0.3
958
Normal
0.3
866
Normal
0.3
448
Normal
0.3
114
Normal
0.3
956
Normal
0.3
342
Normal
0.3
272
Normal
0.3
328
Normal
0.3
952
Normal
0.3
1014
Normal
0.3
912
Normal
0.3
696
Normal
0.2
1016
Normal
0.2
852
Normal
0.2
981
Tumor
0.2
964
Normal
0.2
526
Normal
0.2
816
Normal
0.2
452
Normal
0.2
258
Normal
0.2
884
Normal
0.2
227
Tumor
0.2
387
Tumor
0.2
214
Normal
0.2
1043
Tumor
0.2
686
Normal
0.2
446
Normal
0.2
727
Tumor
0.2
488
Normal
0.2
356
Normal
0.2
392
Normal
0.2
186
Normal
0.2
366
Normal
0.2
424
Normal
0.2
146
Normal
0.2
558
Normal
0.2
534
Normal
0.2
722
Normal
0.2
778
Normal
0.2
528
Normal
0.2
468
Normal
0.2
126
Normal
0.2
666
Normal
0.2
976
Normal
0.2
358
Normal
0.2
136
Normal
0.2
954
Normal
0.2
514
Normal
0.2
327
Tumor
0.2
284
Normal
0.2
636
Normal
0.2
918
Normal
0.2
642
Normal
0.2
286
Normal
0.2
917
Tumor
0.2
864
Normal
0.2
232
Normal
0.2
132
Normal
0.2
138
Normal
0.2
188
Normal
0.2
474
Normal
0.1
388
Normal
0.1
564
Normal
0.1
128
Normal
0.1
434
Normal
0.1
572
Normal
0.1
741
Tumor
0.1
494
Normal
0.1
396
Normal
0.1
148
Normal
0.1
332
Normal
0.1
262
Normal
0.1
537
Tumor
0.1
744
Normal
0.1
755
Tumor
0.1
344
Normal
0.1
916
Normal
0.1
465
Tumor
0.1
874
Normal
0.1
568
Normal
0.1
567
Tumor
0.1
878
Normal
0.1
915
Tumor
0.1
968
Normal
0.1
192
Normal
0.1
354
Normal
0.1
142
Normal
0.1
538
Normal
0.1
1028
Normal
0.0
536
Normal
0.0
261
Tumor
0.0
695
Tumor
0.0
498
Normal
0.0
984
Normal
0.0
574
Normal
0.0
478
Normal
0.0
352
Normal
0.0
361
Tumor
0.0
224
Normal
0.0
785
Tumor
0.0
513
Tumor
0.0
444
Normal
0.0
554
Normal
0.0
923
Tumor
0.0
571
Tumor
0.0
368
Normal
0.0
412
Normal
0.0
672
Normal
0.0
813
Tumor
0.0
523
Tumor
0.0
697
Tumor
0.0
524
Normal
0.0
147
Tumor
0.0
375
Tumor
0.0
268
Normal
0.0
492
Normal
0.0
376
Normal
0.0
311
Tumor
-0.1
393
Tumor
-0.1
435
Tumor
-0.1
515
Tumor
-0.1
313
Tumor
-0.1
867
Tumor
-0.1
925
Tumor
-0.1
1025
Tumor
-0.1
627
Tumor
-0.1
124
Normal
-0.1
217
Tumor
-0.1
635
Tumor
-0.1
195
Tumor
-0.1
355
Tumor
-0.1
421
Tumor
-0.1
357
Tumor
-0.1
113
Tumor
-0.1
127
Tumor
-0.1
367
Tumor
-0.2
145
Tumor
-0.2
983
Tumor
-0.2
1041
Tumor
-0.2
384
Normal
-0.2
957
Tumor
-0.2
351
Tumor
-0.2
451
Tumor
-0.2
721
Tumor
-0.2
231
Tumor
-0.2
715
Tumor
-0.2
431
Tumor
-0.2
413
Tumor
-0.2
573
Tumor
-0.2
477
Tumor
-0.2
517
Tumor
-0.2
557
Tumor
-0.2
911
Tumor
-0.2
493
Tumor
-0.2
777
Tumor
-0.2
353
Tumor
-0.2
967
Tumor
-0.2
467
Tumor
-0.3
563
Tumor
-0.3
213
Tumor
-0.3
963
Tumor
-0.3
483
Tumor
-0.3
851
Tumor
-0.3
391
Tumor
-0.3
814
Normal
-0.3
447
Tumor
-0.3
185
Tumor
-0.3
617
Tumor
-0.3
433
Tumor
-0.3
877
Tumor
-0.3
713
Tumor
-0.3
527
Tumor
-0.3
455
Tumor
-0.3
415
Tumor
-0.3
873
Tumor
-0.3
823
Tumor
-0.3
411
Tumor
-0.3
937
Tumor
-0.3
171
Tumor
-0.3
661
Tumor
-0.3
1013
Tumor
-0.3
1021
Tumor
-0.3
283
Tumor
-0.3
267
Tumor
-0.4
297
Tumor
-0.4
815
Tumor
-0.4
343
Tumor
-0.4
191
Tumor
-0.4
663
Tumor
-0.4
553
Tumor
-0.4
135
Tumor
-0.4
395
Tumor
-0.4
861
Tumor
-0.4
427
Tumor
-0.4
161
Tumor
-0.4
385
Tumor
-0.4
647
Tumor
-0.4
363
Tumor
-0.4
425
Tumor
-0.4
341
Tumor
-0.4
123
Tumor
-0.4
445
Tumor
-0.4
187
Tumor
-0.4
137
Tumor
-0.4
533
Tumor
-0.5
491
Tumor
-0.5
285
Tumor
-0.5
921
Tumor
-0.5
443
Tumor
-0.5
497
Tumor
-0.5
277
Tumor
-0.5
223
Tumor
-0.5
461
Tumor
-0.5
881
Tumor
-0.5
535
Tumor
-0.5
857
Tumor
-0.5
211
Tumor
-0.5
365
Tumor
-0.5
1031
Tumor
-0.5
525
Tumor
-0.5
965
Tumor
-0.5
545
Tumor
-0.5
383
Tumor
-0.5
883
Tumor
-0.5
724
Normal
-0.6
141
Tumor
-0.6
977
Tumor
-0.6
271
Tumor
-0.6
943
Tumor
-0.6
112
Tumor
-0.7
131
Tumor
-0.7
471
Tumor
-0.7
331
Tumor
-0.7
863
Tumor
-0.7
423
Tumor
-0.7
975
Tumor
-0.7
463
Tumor
-0.7
665
Tumor
-0.8
671
Tumor
-0.8
865
Tumor
-0.8
951
Tumor
-0.8
473
Tumor
-0.8
221
Tumor
-0.8
817
Tumor
-0.8
743
Tumor
-0.8
641
Tumor
-0.8
487
Tumor
-0.9
737
Tumor
-0.9
913
Tumor
-0.9
1015
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.