We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EXOSC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
68.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
63.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
61.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
58.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
57.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
52.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
51.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
51.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
51.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
51.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
50.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
48.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
48.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
47.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
45.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
44.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
44.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
43.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
43.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
42.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
42.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
41.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
40.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
39.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
39.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
38.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
38.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
38.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
38.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
37.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
37.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
36.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
36.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
36.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
35.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
35.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
35.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
34.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
34.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
33.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
33.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
33.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
32.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
31.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
31.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
31.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
31.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
30.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
30.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
30.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
29.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
29.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
29.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
28.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
28.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
27.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
26.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EXOSC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.2
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
41.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
40.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
39.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
35.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
29.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
28.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
28.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.2
951
Tumor
1.1
685
Tumor
1.0
473
Tumor
1.0
285
Tumor
0.8
967
Tumor
0.8
937
Tumor
0.7
533
Tumor
0.7
715
Tumor
0.7
925
Tumor
0.7
983
Tumor
0.7
327
Tumor
0.6
865
Tumor
0.6
817
Tumor
0.6
695
Tumor
0.6
883
Tumor
0.6
497
Tumor
0.6
923
Tumor
0.6
211
Tumor
0.5
661
Tumor
0.5
815
Tumor
0.5
477
Tumor
0.5
411
Tumor
0.5
351
Tumor
0.5
395
Tumor
0.5
535
Tumor
0.5
537
Tumor
0.5
957
Tumor
0.5
557
Tumor
0.5
227
Tumor
0.5
471
Tumor
0.4
283
Tumor
0.4
877
Tumor
0.4
261
Tumor
0.4
387
Tumor
0.4
523
Tumor
0.4
721
Tumor
0.4
483
Tumor
0.4
367
Tumor
0.4
921
Tumor
0.4
755
Tumor
0.4
867
Tumor
0.4
1041
Tumor
0.3
823
Tumor
0.3
1031
Tumor
0.3
363
Tumor
0.3
881
Tumor
0.3
1013
Tumor
0.3
141
Tumor
0.3
525
Tumor
0.3
331
Tumor
0.3
743
Tumor
0.3
981
Tumor
0.3
953
Tumor
0.3
413
Tumor
0.3
267
Tumor
0.3
913
Tumor
0.3
271
Tumor
0.3
465
Tumor
0.2
861
Tumor
0.2
851
Tumor
0.2
493
Tumor
0.2
696
Normal
0.2
916
Normal
0.2
963
Tumor
0.2
487
Tumor
0.2
527
Tumor
0.2
355
Tumor
0.2
467
Tumor
0.2
873
Tumor
0.2
131
Tumor
0.2
427
Tumor
0.2
714
Normal
0.2
977
Tumor
0.2
513
Tumor
0.2
223
Tumor
0.2
647
Tumor
0.2
777
Tumor
0.2
966
Normal
0.2
1021
Tumor
0.2
1015
Tumor
0.2
538
Normal
0.2
491
Tumor
0.2
524
Normal
0.2
545
Tumor
0.1
943
Tumor
0.1
415
Tumor
0.1
447
Tumor
0.1
866
Normal
0.1
123
Tumor
0.1
663
Tumor
0.1
383
Tumor
0.1
311
Tumor
0.1
926
Normal
0.1
517
Tumor
0.1
911
Tumor
0.1
536
Normal
0.1
492
Normal
0.1
857
Tumor
0.1
741
Tumor
0.1
1045
Tumor
0.1
343
Tumor
0.1
431
Tumor
0.1
161
Tumor
0.1
526
Normal
0.1
516
Normal
0.1
713
Tumor
0.1
955
Tumor
0.1
488
Normal
0.1
666
Normal
0.1
697
Tumor
0.1
813
Tumor
0.1
515
Tumor
0.1
665
Tumor
0.1
915
Tumor
0.0
1014
Normal
0.0
918
Normal
0.0
494
Normal
0.0
385
Tumor
0.0
554
Normal
0.0
852
Normal
0.0
858
Normal
0.0
922
Normal
0.0
461
Tumor
0.0
518
Normal
0.0
113
Tumor
0.0
277
Tumor
0.0
818
Normal
0.0
498
Normal
0.0
863
Tumor
0.0
917
Tumor
0.0
272
Normal
0.0
864
Normal
0.0
862
Normal
0.0
737
Tumor
0.0
567
Tumor
0.0
361
Tumor
0.0
484
Normal
0.0
455
Tumor
0.0
435
Tumor
0.0
412
Normal
0.0
463
Tumor
0.0
978
Normal
0.0
534
Normal
0.0
1025
Tumor
0.0
213
Tumor
0.0
648
Normal
0.0
944
Normal
0.0
954
Normal
0.0
878
Normal
0.0
924
Normal
0.0
514
Normal
0.0
451
Tumor
0.0
868
Normal
0.0
816
Normal
0.0
341
Tumor
0.0
135
Tumor
0.0
744
Normal
0.0
671
Tumor
0.0
423
Tumor
0.0
187
Tumor
0.0
445
Tumor
0.0
746
Normal
0.0
137
Tumor
0.0
553
Tumor
0.0
738
Normal
0.0
814
Normal
-0.1
185
Tumor
-0.1
357
Tumor
-0.1
952
Normal
-0.1
975
Tumor
-0.1
474
Normal
-0.1
365
Tumor
-0.1
433
Tumor
-0.1
353
Tumor
-0.1
314
Normal
-0.1
742
Normal
-0.1
938
Normal
-0.1
1016
Normal
-0.1
448
Normal
-0.1
278
Normal
-0.1
874
Normal
-0.1
313
Tumor
-0.1
191
Tumor
-0.1
912
Normal
-0.1
716
Normal
-0.1
224
Normal
-0.1
724
Normal
-0.1
376
Normal
-0.1
332
Normal
-0.1
221
Tumor
-0.1
222
Normal
-0.1
1026
Normal
-0.1
664
Normal
-0.1
312
Normal
-0.1
217
Tumor
-0.1
546
Normal
-0.1
231
Tumor
-0.1
956
Normal
-0.1
785
Tumor
-0.2
298
Normal
-0.2
571
Tumor
-0.2
297
Tumor
-0.2
728
Normal
-0.2
212
Normal
-0.2
727
Tumor
-0.2
284
Normal
-0.2
882
Normal
-0.2
344
Normal
-0.2
884
Normal
-0.2
472
Normal
-0.2
368
Normal
-0.2
672
Normal
-0.2
228
Normal
-0.2
662
Normal
-0.2
142
Normal
-0.2
686
Normal
-0.2
964
Normal
-0.2
778
Normal
-0.2
1028
Normal
-0.2
384
Normal
-0.2
425
Tumor
-0.2
443
Tumor
-0.2
958
Normal
-0.2
391
Tumor
-0.2
914
Normal
-0.2
112
Tumor
-0.2
1027
Tumor
-0.2
192
Normal
-0.2
982
Normal
-0.2
375
Tumor
-0.2
286
Normal
-0.2
723
Tumor
-0.2
366
Normal
-0.2
968
Normal
-0.2
328
Normal
-0.2
1042
Normal
-0.2
478
Normal
-0.2
573
Tumor
-0.2
362
Normal
-0.2
698
Normal
-0.3
268
Normal
-0.3
434
Normal
-0.3
354
Normal
-0.3
364
Normal
-0.3
574
Normal
-0.3
1032
Normal
-0.3
257
Tumor
-0.3
984
Normal
-0.3
416
Normal
-0.3
342
Normal
-0.3
635
Tumor
-0.3
414
Normal
-0.3
824
Normal
-0.3
258
Normal
-0.3
214
Normal
-0.3
196
Normal
-0.3
138
Normal
-0.3
393
Tumor
-0.3
356
Normal
-0.3
745
Tumor
-0.3
195
Tumor
-0.3
147
Tumor
-0.3
564
Normal
-0.3
563
Tumor
-0.3
145
Tumor
-0.3
1043
Tumor
-0.3
1046
Normal
-0.3
124
Normal
-0.3
426
Normal
-0.3
171
Tumor
-0.3
616
Normal
-0.3
422
Normal
-0.3
421
Tumor
-0.4
976
Normal
-0.4
218
Normal
-0.4
528
Normal
-0.4
444
Normal
-0.4
1044
Normal
-0.4
127
Tumor
-0.4
146
Normal
-0.4
262
Normal
-0.4
466
Normal
-0.4
114
Normal
-0.4
1022
Normal
-0.4
352
Normal
-0.4
358
Normal
-0.4
617
Tumor
-0.4
128
Normal
-0.4
558
Normal
-0.4
111
Normal
-0.4
722
Normal
-0.4
126
Normal
-0.4
481
Tumor
-0.4
462
Normal
-0.4
132
Normal
-0.4
618
Normal
-0.4
436
Normal
-0.5
136
Normal
-0.5
642
Normal
-0.5
424
Normal
-0.5
456
Normal
-0.5
568
Normal
-0.5
452
Normal
-0.5
636
Normal
-0.5
125
Tumor
-0.5
628
Normal
-0.5
572
Normal
-0.5
188
Normal
-0.5
428
Normal
-0.5
641
Tumor
-0.5
464
Normal
-0.6
392
Normal
-0.6
786
Normal
-0.6
615
Tumor
-0.6
446
Normal
-0.6
388
Normal
-0.6
756
Normal
-0.6
232
Normal
-0.6
482
Normal
-0.6
468
Normal
-0.6
396
Normal
-0.6
186
Normal
-0.6
172
Normal
-0.7
386
Normal
-0.7
394
Normal
-0.7
432
Normal
-0.7
162
Normal
-0.7
148
Normal
-0.7
627
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
