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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDH2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
151.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
140.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
100.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
99.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
94.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
91.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
74.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
73.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
71.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
68.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
67.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
66.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
64.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
61.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
60.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
59.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
58.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
57.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
56.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
56.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
53.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
52.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
52.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
51.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
50.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
49.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
49.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
49.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
49.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
49.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
49.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
48.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
47.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
47.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
46.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
45.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
43.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
42.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
42.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
42.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
40.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
40.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
40.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
40.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
40.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
39.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
38.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
38.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
37.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
37.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
34.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
33.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
33.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
31.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
29.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
26.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
21.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDH2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.5
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
78.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
75.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
74.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
70.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
67.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
67.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
64.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
63.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
58.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
55.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
51.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
51.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
50.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
49.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
49.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
49.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
48.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
44.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
42.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
41.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
41.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
36.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
36.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
33.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
32.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
29.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
27.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
0.9
695
Tumor
0.9
737
Tumor
0.8
443
Tumor
0.8
636
Normal
0.7
112
Tumor
0.7
517
Tumor
0.6
743
Tumor
0.6
487
Tumor
0.6
954
Normal
0.6
686
Normal
0.6
922
Normal
0.6
1025
Tumor
0.5
376
Normal
0.5
488
Normal
0.5
131
Tumor
0.5
715
Tumor
0.5
344
Normal
0.5
744
Normal
0.5
817
Tumor
0.5
465
Tumor
0.5
696
Normal
0.5
937
Tumor
0.5
1014
Normal
0.5
534
Normal
0.5
392
Normal
0.4
944
Normal
0.4
127
Tumor
0.4
635
Tumor
0.4
714
Normal
0.4
484
Normal
0.4
135
Tumor
0.4
741
Tumor
0.4
984
Normal
0.4
498
Normal
0.4
528
Normal
0.4
412
Normal
0.4
554
Normal
0.4
862
Normal
0.4
448
Normal
0.4
482
Normal
0.4
342
Normal
0.4
538
Normal
0.4
477
Tumor
0.4
481
Tumor
0.4
546
Normal
0.4
615
Tumor
0.4
1031
Tumor
0.4
727
Tumor
0.4
745
Tumor
0.4
452
Normal
0.4
938
Normal
0.3
863
Tumor
0.3
958
Normal
0.3
332
Normal
0.3
354
Normal
0.3
926
Normal
0.3
393
Tumor
0.3
368
Normal
0.3
221
Tumor
0.3
421
Tumor
0.3
864
Normal
0.3
964
Normal
0.3
755
Tumor
0.3
222
Normal
0.3
824
Normal
0.3
142
Normal
0.3
1046
Normal
0.3
698
Normal
0.3
1041
Tumor
0.3
483
Tumor
0.3
232
Normal
0.3
858
Normal
0.3
672
Normal
0.3
786
Normal
0.3
912
Normal
0.3
494
Normal
0.3
352
Normal
0.3
415
Tumor
0.3
436
Normal
0.3
685
Tumor
0.3
468
Normal
0.3
925
Tumor
0.3
526
Normal
0.3
515
Tumor
0.3
572
Normal
0.3
426
Normal
0.3
924
Normal
0.3
432
Normal
0.3
568
Normal
0.3
518
Normal
0.3
367
Tumor
0.3
536
Normal
0.3
124
Normal
0.3
387
Tumor
0.3
394
Normal
0.3
356
Normal
0.2
878
Normal
0.2
497
Tumor
0.2
742
Normal
0.2
298
Normal
0.2
975
Tumor
0.2
388
Normal
0.2
955
Tumor
0.2
462
Normal
0.2
911
Tumor
0.2
778
Normal
0.2
913
Tumor
0.2
1043
Tumor
0.2
218
Normal
0.2
148
Normal
0.2
314
Normal
0.2
1022
Normal
0.2
1044
Normal
0.2
723
Tumor
0.2
172
Normal
0.2
261
Tumor
0.2
358
Normal
0.2
286
Normal
0.2
513
Tumor
0.2
647
Tumor
0.2
185
Tumor
0.2
756
Normal
0.2
818
Normal
0.2
617
Tumor
0.2
563
Tumor
0.2
341
Tumor
0.2
553
Tumor
0.2
192
Normal
0.2
882
Normal
0.2
868
Normal
0.2
466
Normal
0.2
451
Tumor
0.2
396
Normal
0.2
128
Normal
0.2
472
Normal
0.2
364
Normal
0.2
433
Tumor
0.2
514
Normal
0.2
918
Normal
0.2
545
Tumor
0.2
963
Tumor
0.2
186
Normal
0.2
923
Tumor
0.2
414
Normal
0.2
1032
Normal
0.2
516
Normal
0.2
873
Tumor
0.2
196
Normal
0.2
423
Tumor
0.2
1013
Tumor
0.2
716
Normal
0.2
446
Normal
0.2
852
Normal
0.2
746
Normal
0.2
666
Normal
0.2
137
Tumor
0.2
618
Normal
0.2
431
Tumor
0.2
866
Normal
0.1
366
Normal
0.1
533
Tumor
0.1
278
Normal
0.1
228
Normal
0.1
664
Normal
0.1
968
Normal
0.1
132
Normal
0.1
478
Normal
0.1
978
Normal
0.1
642
Normal
0.1
123
Tumor
0.1
616
Normal
0.1
976
Normal
0.1
258
Normal
0.1
648
Normal
0.1
558
Normal
0.1
981
Tumor
0.1
353
Tumor
0.1
982
Normal
0.1
1026
Normal
0.1
662
Normal
0.1
384
Normal
0.1
966
Normal
0.1
214
Normal
0.1
524
Normal
0.1
464
Normal
0.1
1028
Normal
0.1
217
Tumor
0.1
574
Normal
0.1
162
Normal
0.1
977
Tumor
0.1
445
Tumor
0.1
114
Normal
0.1
111
Normal
0.1
363
Tumor
0.1
474
Normal
0.1
728
Normal
0.1
138
Normal
0.1
422
Normal
0.1
785
Tumor
0.1
816
Normal
0.1
456
Normal
0.1
343
Tumor
0.1
861
Tumor
0.1
447
Tumor
0.0
874
Normal
0.0
884
Normal
0.0
284
Normal
0.0
313
Tumor
0.0
493
Tumor
0.0
212
Normal
0.0
525
Tumor
0.0
161
Tumor
0.0
146
Normal
0.0
722
Normal
0.0
952
Normal
0.0
463
Tumor
0.0
628
Normal
0.0
328
Normal
0.0
1042
Normal
0.0
224
Normal
0.0
1016
Normal
0.0
738
Normal
0.0
914
Normal
0.0
362
Normal
0.0
492
Normal
0.0
444
Normal
0.0
471
Tumor
0.0
136
Normal
0.0
663
Tumor
0.0
272
Normal
0.0
297
Tumor
0.0
665
Tumor
0.0
267
Tumor
0.0
271
Tumor
0.0
564
Normal
0.0
883
Tumor
0.0
867
Tumor
0.0
171
Tumor
0.0
424
Normal
0.0
126
Normal
0.0
365
Tumor
0.0
413
Tumor
0.0
1045
Tumor
0.0
435
Tumor
0.0
268
Normal
-0.1
461
Tumor
-0.1
386
Normal
-0.1
257
Tumor
-0.1
967
Tumor
-0.1
956
Normal
-0.1
641
Tumor
-0.1
428
Normal
-0.1
312
Normal
-0.1
357
Tumor
-0.1
285
Tumor
-0.1
1021
Tumor
-0.1
187
Tumor
-0.1
262
Normal
-0.1
188
Normal
-0.1
416
Normal
-0.1
627
Tumor
-0.1
434
Normal
-0.1
113
Tumor
-0.1
145
Tumor
-0.1
916
Normal
-0.1
877
Tumor
-0.1
857
Tumor
-0.1
943
Tumor
-0.1
851
Tumor
-0.2
915
Tumor
-0.2
195
Tumor
-0.2
921
Tumor
-0.2
527
Tumor
-0.2
721
Tumor
-0.2
223
Tumor
-0.2
427
Tumor
-0.2
823
Tumor
-0.2
1015
Tumor
-0.2
361
Tumor
-0.2
815
Tumor
-0.2
965
Tumor
-0.2
213
Tumor
-0.2
473
Tumor
-0.2
147
Tumor
-0.3
411
Tumor
-0.3
777
Tumor
-0.3
227
Tumor
-0.3
191
Tumor
-0.3
467
Tumor
-0.3
327
Tumor
-0.3
535
Tumor
-0.3
537
Tumor
-0.3
953
Tumor
-0.4
813
Tumor
-0.4
1027
Tumor
-0.4
865
Tumor
-0.4
125
Tumor
-0.4
814
Normal
-0.4
383
Tumor
-0.4
355
Tumor
-0.4
141
Tumor
-0.4
557
Tumor
-0.4
573
Tumor
-0.4
523
Tumor
-0.5
391
Tumor
-0.5
277
Tumor
-0.5
455
Tumor
-0.5
917
Tumor
-0.5
567
Tumor
-0.6
661
Tumor
-0.6
881
Tumor
-0.6
375
Tumor
-0.6
283
Tumor
-0.6
983
Tumor
-0.6
951
Tumor
-0.7
351
Tumor
-0.7
231
Tumor
-0.7
395
Tumor
-0.7
331
Tumor
-0.7
571
Tumor
-0.7
957
Tumor
-0.7
671
Tumor
-0.8
311
Tumor
-0.9
491
Tumor
-0.9
385
Tumor
-1.1
724
Normal
-1.2
713
Tumor
-1.3
697
Tumor
-1.3
211
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
