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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SF3B5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
133.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
434.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
324.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
311.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
308.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
285.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
277.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
276.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
270.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
270.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
268.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
268.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
266.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
266.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
265.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
255.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
254.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
254.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
248.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
247.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
246.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
245.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
243.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
240.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
238.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
234.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
231.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
225.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
220.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
218.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
218.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
215.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
215.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
213.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
212.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
212.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
209.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
208.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
206.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
205.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
205.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
204.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
203.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
201.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
200.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
200.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
200.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
200.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
199.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
199.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
197.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
194.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
193.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
192.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
192.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
192.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
191.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
190.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
190.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
190.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
189.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
188.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
188.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
187.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
186.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
185.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
183.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
183.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
183.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
181.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
179.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
179.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
178.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
178.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
176.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
176.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
176.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
174.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
174.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
173.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
172.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
171.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
171.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
171.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
170.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
169.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
169.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
168.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
168.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
166.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
166.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
166.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
166.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
163.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
163.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
161.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
161.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
160.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
160.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
159.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
159.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
159.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
159.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
158.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
156.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
156.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
154.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
154.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
154.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
154.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
153.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
152.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
152.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
152.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
150.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
150.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
149.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
148.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
148.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
148.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
148.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
147.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
146.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
146.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
145.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
144.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
144.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
143.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
143.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
141.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
141.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
141.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
140.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
140.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
140.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
140.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
139.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
139.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
138.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
138.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
138.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
137.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
135.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
135.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
134.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
134.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
134.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
133.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
133.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
132.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
131.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
131.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
131.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
130.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
130.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
129.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
129.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
129.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
129.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
129.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
129.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
128.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
128.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
128.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
127.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
127.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
127.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
126.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
126.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
126.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
126.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
126.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
126.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
125.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
125.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
125.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
124.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
123.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
123.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
123.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
122.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
122.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
122.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
121.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
121.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
121.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
120.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
120.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
120.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
120.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
120.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
120.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
120.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
119.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
119.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
119.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
119.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
118.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
117.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
116.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
116.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
115.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
115.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
115.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
115.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
115.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
114.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
114.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
113.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
113.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
112.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
112.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
112.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
111.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
111.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
110.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
110.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
109.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
109.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
109.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
108.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
108.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
108.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
107.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
105.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
104.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
103.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
103.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
103.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
103.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
103.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
102.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
102.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
102.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
102.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
102.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
101.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
101.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
101.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
101.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
101.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
101.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
100.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
100.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
100.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
99.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
99.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
99.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
99.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
99.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
99.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
98.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
97.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
97.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
96.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
95.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
95.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
95.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
95.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
95.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
95.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
94.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
94.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
93.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
93.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
93.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
92.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
92.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
91.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
91.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
91.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
89.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
89.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
88.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
88.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
88.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
87.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
87.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
86.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
86.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
86.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
86.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
86.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
86.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
85.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
85.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
85.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
84.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
84.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
84.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
82.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
82.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
82.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
82.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
82.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
82.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
82.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
81.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
81.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
81.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
81.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
80.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
80.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
80.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
80.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
79.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
79.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
79.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
79.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
79.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
78.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
78.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
77.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
77.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
77.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
77.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
77.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
76.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
75.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
74.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
74.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
72.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
72.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
71.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
70.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
70.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
70.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
68.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
68.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
68.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
68.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
68.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
66.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
66.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
66.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
64.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
63.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
63.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
63.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
62.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
61.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
61.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
60.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
59.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
58.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
58.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
58.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
57.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
57.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
55.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
54.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
54.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
53.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
53.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
51.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
51.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
50.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
50.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
47.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
47.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
46.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
44.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SF3B5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
78.3
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
263.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
242.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
224.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
204.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
203.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
192.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
183.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
166.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
161.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
159.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
158.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
157.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
155.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
151.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
145.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
145.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
143.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
141.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
138.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
136.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
134.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
133.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
133.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
129.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
128.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
128.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
128.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
127.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
124.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
122.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
122.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
119.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
118.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
116.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
115.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
114.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
112.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
112.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
110.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
109.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
109.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
108.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
106.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
106.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
106.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
105.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
105.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
104.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
104.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
104.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
104.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
103.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
101.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
100.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
99.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
98.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
97.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
96.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
96.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
96.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
95.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
94.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
93.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
93.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
92.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
91.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
90.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
88.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
87.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
87.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
86.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
84.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
84.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
84.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
84.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
83.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
83.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
82.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
82.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
81.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
80.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
79.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
79.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
79.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
79.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
79.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
78.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
78.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
78.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
77.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
77.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
76.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
76.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
74.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
74.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
73.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
73.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
73.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
73.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
72.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
72.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
71.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
71.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
71.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
71.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
71.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
70.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
70.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
70.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
69.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
68.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
68.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
68.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
68.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
68.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
67.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
67.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
67.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
67.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
66.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
65.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
65.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
65.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
64.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
64.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
64.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
63.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
63.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
63.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
63.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
63.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
63.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
63.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
63.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
63.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
63.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
63.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
62.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
62.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
62.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
61.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
61.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
61.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
61.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
61.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
60.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
59.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
59.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
59.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
58.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
57.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
57.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
57.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
57.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
57.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
57.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
56.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
56.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
55.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
55.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
55.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
55.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
55.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
54.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
54.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
52.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
52.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
52.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
51.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
51.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
51.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
51.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
50.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
50.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
50.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
50.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
49.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
49.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
48.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
48.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
47.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
47.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
47.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
46.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
46.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
46.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
46.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
46.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
45.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
45.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
44.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
44.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
44.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
44.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
44.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
43.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
42.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
42.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
40.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
40.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
40.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
39.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
38.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
33.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
33.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
33.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
33.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
32.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
32.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.6
661
Tumor
0.9
815
Tumor
0.9
951
Tumor
0.8
331
Tumor
0.8
737
Tumor
0.8
131
Tumor
0.7
813
Tumor
0.7
647
Tumor
0.7
685
Tumor
0.7
573
Tumor
0.7
983
Tumor
0.7
977
Tumor
0.7
425
Tumor
0.6
411
Tumor
0.6
351
Tumor
0.6
724
Normal
0.6
727
Tumor
0.6
663
Tumor
0.6
777
Tumor
0.6
567
Tumor
0.6
641
Tumor
0.6
313
Tumor
0.5
817
Tumor
0.5
285
Tumor
0.5
671
Tumor
0.5
413
Tumor
0.5
297
Tumor
0.5
741
Tumor
0.5
112
Tumor
0.5
497
Tumor
0.5
865
Tumor
0.5
447
Tumor
0.5
921
Tumor
0.5
431
Tumor
0.4
385
Tumor
0.4
1021
Tumor
0.4
883
Tumor
0.4
861
Tumor
0.4
881
Tumor
0.4
665
Tumor
0.4
721
Tumor
0.4
277
Tumor
0.4
443
Tumor
0.4
367
Tumor
0.4
967
Tumor
0.4
433
Tumor
0.4
123
Tumor
0.4
975
Tumor
0.4
523
Tumor
0.4
635
Tumor
0.4
877
Tumor
0.3
227
Tumor
0.3
755
Tumor
0.3
311
Tumor
0.3
127
Tumor
0.3
535
Tumor
0.3
471
Tumor
0.3
113
Tumor
0.3
745
Tumor
0.3
427
Tumor
0.3
923
Tumor
0.3
917
Tumor
0.3
477
Tumor
0.3
517
Tumor
0.3
571
Tumor
0.3
557
Tumor
0.3
965
Tumor
0.3
435
Tumor
0.3
715
Tumor
0.3
785
Tumor
0.3
1031
Tumor
0.3
387
Tumor
0.3
463
Tumor
0.3
814
Normal
0.2
695
Tumor
0.2
461
Tumor
0.2
261
Tumor
0.2
937
Tumor
0.2
445
Tumor
0.2
851
Tumor
0.2
1027
Tumor
0.2
943
Tumor
0.2
283
Tumor
0.2
357
Tumor
0.2
271
Tumor
0.2
125
Tumor
0.2
1025
Tumor
0.2
487
Tumor
0.2
515
Tumor
0.2
867
Tumor
0.2
873
Tumor
0.2
473
Tumor
0.2
1043
Tumor
0.2
161
Tumor
0.2
863
Tumor
0.1
1015
Tumor
0.1
963
Tumor
0.1
391
Tumor
0.1
217
Tumor
0.1
572
Normal
0.1
911
Tumor
0.1
713
Tumor
0.1
746
Normal
0.1
135
Tumor
0.1
716
Normal
0.1
137
Tumor
0.1
957
Tumor
0.1
925
Tumor
0.1
171
Tumor
0.1
221
Tumor
0.1
617
Tumor
0.1
563
Tumor
0.1
375
Tumor
0.1
455
Tumor
0.1
363
Tumor
0.1
191
Tumor
0.1
185
Tumor
0.1
744
Normal
0.1
913
Tumor
0.1
467
Tumor
0.1
213
Tumor
0.1
196
Normal
0.1
786
Normal
0.1
1013
Tumor
0.1
211
Tumor
0.1
686
Normal
0.1
525
Tumor
0.1
393
Tumor
0.1
223
Tumor
0.1
1022
Normal
0.1
558
Normal
0.1
383
Tumor
0.0
615
Tumor
0.0
353
Tumor
0.0
141
Tumor
0.0
527
Tumor
0.0
953
Tumor
0.0
395
Tumor
0.0
738
Normal
0.0
537
Tumor
0.0
267
Tumor
0.0
878
Normal
0.0
478
Normal
0.0
1032
Normal
0.0
742
Normal
0.0
187
Tumor
0.0
778
Normal
0.0
376
Normal
0.0
355
Tumor
0.0
128
Normal
0.0
628
Normal
0.0
981
Tumor
0.0
966
Normal
-0.1
314
Normal
-0.1
493
Tumor
-0.1
912
Normal
-0.1
616
Normal
-0.1
214
Normal
-0.1
723
Tumor
-0.1
1041
Tumor
-0.1
111
Normal
-0.1
568
Normal
-0.1
448
Normal
-0.1
332
Normal
-0.1
627
Tumor
-0.1
816
Normal
-0.1
823
Tumor
-0.1
462
Normal
-0.1
451
Tumor
-0.1
1028
Normal
-0.1
465
Tumor
-0.1
257
Tumor
-0.1
142
Normal
-0.1
857
Tumor
-0.1
824
Normal
-0.1
432
Normal
-0.1
147
Tumor
-0.1
916
Normal
-0.1
114
Normal
-0.1
195
Tumor
-0.1
915
Tumor
-0.1
664
Normal
-0.1
536
Normal
-0.1
423
Tumor
-0.1
714
Normal
-0.1
126
Normal
-0.1
924
Normal
-0.1
352
Normal
-0.1
756
Normal
-0.1
1045
Tumor
-0.2
218
Normal
-0.2
148
Normal
-0.2
186
Normal
-0.2
648
Normal
-0.2
341
Tumor
-0.2
636
Normal
-0.2
434
Normal
-0.2
728
Normal
-0.2
343
Tumor
-0.2
533
Tumor
-0.2
955
Tumor
-0.2
284
Normal
-0.2
978
Normal
-0.2
365
Tumor
-0.2
384
Normal
-0.2
231
Tumor
-0.2
298
Normal
-0.2
124
Normal
-0.2
862
Normal
-0.2
818
Normal
-0.2
1044
Normal
-0.2
696
Normal
-0.2
356
Normal
-0.2
1026
Normal
-0.2
564
Normal
-0.2
188
Normal
-0.2
192
Normal
-0.2
666
Normal
-0.2
354
Normal
-0.2
662
Normal
-0.2
864
Normal
-0.2
426
Normal
-0.2
884
Normal
-0.2
964
Normal
-0.2
145
Tumor
-0.2
984
Normal
-0.2
546
Normal
-0.2
421
Tumor
-0.2
222
Normal
-0.2
491
Tumor
-0.2
922
Normal
-0.2
224
Normal
-0.2
524
Normal
-0.3
1042
Normal
-0.3
866
Normal
-0.3
914
Normal
-0.3
394
Normal
-0.3
424
Normal
-0.3
327
Tumor
-0.3
474
Normal
-0.3
968
Normal
-0.3
938
Normal
-0.3
513
Tumor
-0.3
286
Normal
-0.3
698
Normal
-0.3
136
Normal
-0.3
268
Normal
-0.3
396
Normal
-0.3
697
Tumor
-0.3
534
Normal
-0.3
444
Normal
-0.3
132
Normal
-0.3
452
Normal
-0.3
516
Normal
-0.3
228
Normal
-0.3
212
Normal
-0.3
342
Normal
-0.3
361
Tumor
-0.3
344
Normal
-0.3
278
Normal
-0.3
436
Normal
-0.3
868
Normal
-0.3
262
Normal
-0.3
958
Normal
-0.3
488
Normal
-0.3
882
Normal
-0.3
952
Normal
-0.3
1046
Normal
-0.3
482
Normal
-0.3
472
Normal
-0.3
483
Tumor
-0.3
392
Normal
-0.3
976
Normal
-0.3
386
Normal
-0.3
982
Normal
-0.3
1016
Normal
-0.3
874
Normal
-0.3
172
Normal
-0.3
722
Normal
-0.3
388
Normal
-0.3
574
Normal
-0.3
466
Normal
-0.3
1014
Normal
-0.3
618
Normal
-0.3
852
Normal
-0.4
858
Normal
-0.4
362
Normal
-0.4
162
Normal
-0.4
415
Tumor
-0.4
484
Normal
-0.4
492
Normal
-0.4
554
Normal
-0.4
358
Normal
-0.4
642
Normal
-0.4
416
Normal
-0.4
954
Normal
-0.4
672
Normal
-0.4
528
Normal
-0.4
414
Normal
-0.4
518
Normal
-0.4
428
Normal
-0.4
232
Normal
-0.4
422
Normal
-0.4
545
Tumor
-0.4
272
Normal
-0.4
366
Normal
-0.4
944
Normal
-0.4
138
Normal
-0.4
328
Normal
-0.4
481
Tumor
-0.4
446
Normal
-0.4
918
Normal
-0.5
494
Normal
-0.5
412
Normal
-0.5
258
Normal
-0.5
312
Normal
-0.5
364
Normal
-0.5
468
Normal
-0.5
926
Normal
-0.5
498
Normal
-0.5
526
Normal
-0.6
146
Normal
-0.6
553
Tumor
-0.6
456
Normal
-0.6
464
Normal
-0.6
368
Normal
-0.6
956
Normal
-0.7
538
Normal
-0.7
514
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.