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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TM4SF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
89.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1058.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1006.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
855.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
647.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
622.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
606.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
606.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
560.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
559.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
445.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
415.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
415.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
375.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
370.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
369.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
358.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
335.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
330.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
327.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
326.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
313.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
297.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
282.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
273.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
269.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
262.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
262.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
261.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
244.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
236.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
235.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
234.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
234.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
225.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
219.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
217.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
191.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
188.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
186.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
186.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
180.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
177.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
175.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
174.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
173.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
164.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
157.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
152.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
150.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
149.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
148.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
145.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
143.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
142.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
141.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
138.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
137.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
135.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
133.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
129.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
127.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
125.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
124.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
121.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
121.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
121.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
120.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
118.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
117.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
116.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
116.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
115.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
114.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
112.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
111.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
110.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
108.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
108.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
107.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
107.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
105.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
104.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
104.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
103.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
99.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
99.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
98.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
98.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
96.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
95.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
95.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
94.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
94.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
94.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
93.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
92.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
91.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
91.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
89.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
89.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
87.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
86.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
85.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
81.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
80.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
79.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
79.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
78.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
78.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
77.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
74.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
74.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
73.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
72.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
72.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
72.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
71.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
71.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
71.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
70.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
70.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
69.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
69.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
69.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
69.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
69.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
68.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
68.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
67.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
67.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
66.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
66.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
65.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
65.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
65.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
64.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
64.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
63.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
62.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
61.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
61.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
61.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
60.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
60.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
58.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
57.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
57.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
56.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
56.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
55.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
55.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
54.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
54.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
54.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
53.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
53.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
52.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
52.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
52.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
52.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
52.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
51.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
51.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
51.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
51.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
50.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
50.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
49.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
49.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
49.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
48.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
47.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
47.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
46.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
46.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
46.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
46.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
46.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
45.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
45.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
45.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
44.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
44.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
43.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
42.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
42.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
41.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
41.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
41.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
41.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
40.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
40.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
39.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
39.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
39.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
39.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
38.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
38.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
38.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
38.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
36.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
35.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
35.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
35.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
35.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
35.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
35.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
32.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
32.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
32.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
30.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
30.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
29.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
29.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
29.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
28.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
28.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
28.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
27.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
23.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
21.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TM4SF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
106.2
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
895.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
819.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
738.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
733.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
682.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
679.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
609.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
523.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
493.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
460.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
434.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
432.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
428.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
426.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
392.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
334.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
333.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
321.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
320.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
289.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
287.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
273.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
267.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
246.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
239.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
234.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
225.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
220.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
216.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
209.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
203.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
191.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
190.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
181.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
180.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
178.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
174.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
157.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
148.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
143.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
139.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
137.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
132.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
131.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
131.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
129.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
127.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
124.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
124.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
120.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
120.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
119.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
111.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
111.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
110.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
107.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
105.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
105.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
105.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
105.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
104.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
104.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
103.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
103.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
103.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
102.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
100.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
98.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
98.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
98.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
97.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
97.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
97.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
95.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
94.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
94.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
94.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
93.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
93.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
92.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
91.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
91.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
89.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
88.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
84.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
84.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
83.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
83.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
77.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
77.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
76.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
76.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
74.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
73.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
73.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
73.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
71.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
70.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
70.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
67.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
66.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
62.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
61.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
60.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
60.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
58.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
57.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
57.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
55.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
54.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
54.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
54.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
54.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
53.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
52.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
52.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
51.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
51.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
51.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
50.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
49.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
49.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
49.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
48.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
48.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
47.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
46.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
46.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
46.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
45.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
44.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
43.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
42.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
40.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
38.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
36.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
36.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
36.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
36.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
35.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
34.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
34.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
34.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
33.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
367
Tumor
1.8
671
Tumor
1.7
395
Tumor
1.5
535
Tumor
1.5
1041
Tumor
1.3
213
Tumor
1.2
125
Tumor
1.2
331
Tumor
1.1
573
Tumor
1.1
192
Normal
1.0
697
Tumor
0.9
877
Tumor
0.9
427
Tumor
0.8
137
Tumor
0.8
617
Tumor
0.8
217
Tumor
0.8
567
Tumor
0.8
191
Tumor
0.7
665
Tumor
0.7
413
Tumor
0.7
421
Tumor
0.7
385
Tumor
0.7
391
Tumor
0.6
664
Normal
0.5
278
Normal
0.5
477
Tumor
0.5
145
Tumor
0.5
195
Tumor
0.5
672
Normal
0.5
1042
Normal
0.5
954
Normal
0.5
447
Tumor
0.4
277
Tumor
0.4
311
Tumor
0.4
536
Normal
0.4
981
Tumor
0.4
196
Normal
0.4
982
Normal
0.4
473
Tumor
0.4
938
Normal
0.4
218
Normal
0.4
124
Normal
0.4
1014
Normal
0.4
666
Normal
0.4
297
Tumor
0.3
463
Tumor
0.3
222
Normal
0.3
127
Tumor
0.3
375
Tumor
0.3
214
Normal
0.3
698
Normal
0.3
135
Tumor
0.3
482
Normal
0.3
917
Tumor
0.3
387
Tumor
0.3
332
Normal
0.2
648
Normal
0.2
386
Normal
0.2
313
Tumor
0.2
944
Normal
0.2
452
Normal
0.2
1022
Normal
0.2
312
Normal
0.2
956
Normal
0.2
455
Tumor
0.1
1046
Normal
0.1
146
Normal
0.1
636
Normal
0.1
448
Normal
0.1
1021
Tumor
0.1
392
Normal
0.1
635
Tumor
0.1
883
Tumor
0.1
627
Tumor
0.0
466
Normal
0.0
615
Tumor
0.0
314
Normal
0.0
864
Normal
0.0
221
Tumor
0.0
865
Tumor
0.0
861
Tumor
0.0
361
Tumor
0.0
1027
Tumor
0.0
467
Tumor
0.0
571
Tumor
0.0
943
Tumor
0.0
424
Normal
0.0
1044
Normal
0.0
451
Tumor
0.0
478
Normal
0.0
976
Normal
0.0
462
Normal
0.0
984
Normal
0.0
958
Normal
0.0
472
Normal
0.0
662
Normal
0.0
383
Tumor
-0.1
388
Normal
-0.1
661
Tumor
-0.1
983
Tumor
-0.1
456
Normal
-0.1
647
Tumor
-0.1
298
Normal
-0.1
474
Normal
-0.1
132
Normal
-0.1
1032
Normal
-0.1
1016
Normal
-0.1
952
Normal
-0.1
393
Tumor
-0.1
1028
Normal
-0.2
642
Normal
-0.2
428
Normal
-0.2
914
Normal
-0.2
394
Normal
-0.2
396
Normal
-0.2
862
Normal
-0.2
465
Tumor
-0.2
966
Normal
-0.2
616
Normal
-0.2
436
Normal
-0.2
957
Tumor
-0.2
641
Tumor
-0.2
968
Normal
-0.2
925
Tumor
-0.2
468
Normal
-0.2
574
Normal
-0.2
426
Normal
-0.2
434
Normal
-0.2
464
Normal
-0.2
963
Tumor
-0.2
1015
Tumor
-0.2
444
Normal
-0.2
481
Tumor
-0.2
564
Normal
-0.3
112
Tumor
-0.3
1025
Tumor
-0.3
964
Normal
-0.3
618
Normal
-0.3
911
Tumor
-0.3
628
Normal
-0.3
1026
Normal
-0.3
572
Normal
-0.3
433
Tumor
-0.3
1031
Tumor
-0.4
423
Tumor
-0.4
568
Normal
-0.4
422
Normal
-0.4
557
Tumor
-0.4
563
Tumor
-0.4
142
Normal
-0.4
663
Tumor
-0.4
365
Tumor
-0.4
967
Tumor
-0.4
446
Normal
-0.4
445
Tumor
-0.5
432
Normal
-0.5
1045
Tumor
-0.5
866
Normal
-0.5
913
Tumor
-0.5
414
Normal
-0.5
1043
Tumor
-0.5
384
Normal
-0.5
461
Tumor
-0.5
558
Normal
-0.5
136
Normal
-0.5
868
Normal
-0.5
362
Normal
-0.6
874
Normal
-0.6
131
Tumor
-0.6
863
Tumor
-0.6
366
Normal
-0.6
978
Normal
-0.6
923
Tumor
-0.6
975
Tumor
-0.6
425
Tumor
-0.6
128
Normal
-0.7
471
Tumor
-0.7
138
Normal
-0.7
916
Normal
-0.7
113
Tumor
-0.7
878
Normal
-0.7
937
Tumor
-0.7
915
Tumor
-0.7
376
Normal
-0.7
126
Normal
-0.7
1013
Tumor
-0.8
435
Tumor
-0.8
924
Normal
-0.8
977
Tumor
-0.9
111
Normal
-0.9
912
Normal
-0.9
881
Tumor
-0.9
443
Tumor
-0.9
955
Tumor
-0.9
918
Normal
-0.9
953
Tumor
-0.9
882
Normal
-1.0
431
Tumor
-1.0
965
Tumor
-1.1
867
Tumor
-1.1
922
Normal
-1.2
926
Normal
-1.2
921
Tumor
-1.2
884
Normal
-1.4
873
Tumor
-1.4
951
Tumor
-1.4
123
Tumor
-1.5
141
Tumor
-1.9
114
Normal
-2.0
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
368
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
857
Tumor
N/A
737
Tumor
N/A
858
Normal
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
756
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
553
Tumor
N/A
554
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
211
Tumor
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
223
Tumor
N/A
344
Normal
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
