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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYAP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
44.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
42.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
38.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
28.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYAP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.2
Number of samples
231
Samples
Sample
Description
TPM
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
48.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
42.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
40.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
36.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
30.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
30.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
29.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
27.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.4
647
Tumor
1.2
533
Tumor
1.1
171
Tumor
1.1
697
Tumor
1.0
567
Tumor
1.0
911
Tumor
1.0
923
Tumor
0.9
745
Tumor
0.9
231
Tumor
0.8
724
Normal
0.8
713
Tumor
0.8
1021
Tumor
0.8
967
Tumor
0.8
913
Tumor
0.8
571
Tumor
0.8
741
Tumor
0.8
445
Tumor
0.7
1027
Tumor
0.6
737
Tumor
0.6
951
Tumor
0.6
527
Tumor
0.6
123
Tumor
0.6
525
Tumor
0.6
537
Tumor
0.6
685
Tumor
0.6
785
Tumor
0.6
952
Normal
0.6
965
Tumor
0.5
411
Tumor
0.5
484
Normal
0.5
698
Normal
0.5
1041
Tumor
0.5
777
Tumor
0.5
487
Tumor
0.4
557
Tumor
0.4
738
Normal
0.4
746
Normal
0.4
922
Normal
0.4
816
Normal
0.4
518
Normal
0.4
1045
Tumor
0.4
824
Normal
0.4
861
Tumor
0.4
327
Tumor
0.4
1026
Normal
0.3
983
Tumor
0.3
351
Tumor
0.3
714
Normal
0.3
615
Tumor
0.3
742
Normal
0.3
924
Normal
0.3
462
Normal
0.3
285
Tumor
0.3
1022
Normal
0.3
786
Normal
0.3
862
Normal
0.3
356
Normal
0.3
873
Tumor
0.3
616
Normal
0.3
912
Normal
0.3
727
Tumor
0.3
648
Normal
0.3
493
Tumor
0.3
958
Normal
0.3
1016
Normal
0.3
882
Normal
0.3
1043
Tumor
0.3
921
Tumor
0.3
513
Tumor
0.3
813
Tumor
0.3
573
Tumor
0.3
778
Normal
0.3
471
Tumor
0.3
147
Tumor
0.2
1025
Tumor
0.2
494
Normal
0.2
534
Normal
0.2
695
Tumor
0.2
554
Normal
0.2
127
Tumor
0.2
222
Normal
0.2
474
Normal
0.2
728
Normal
0.2
431
Tumor
0.2
944
Normal
0.2
723
Tumor
0.2
483
Tumor
0.2
721
Tumor
0.2
364
Normal
0.2
446
Normal
0.2
546
Normal
0.2
261
Tumor
0.2
722
Normal
0.2
968
Normal
0.2
477
Tumor
0.2
982
Normal
0.2
572
Normal
0.2
1015
Tumor
0.1
884
Normal
0.1
286
Normal
0.1
355
Tumor
0.1
964
Normal
0.1
545
Tumor
0.1
465
Tumor
0.1
956
Normal
0.1
267
Tumor
0.1
955
Tumor
0.1
1014
Normal
0.1
925
Tumor
0.1
186
Normal
0.1
696
Normal
0.1
488
Normal
0.1
938
Normal
0.1
818
Normal
0.1
472
Normal
0.1
473
Tumor
0.1
341
Tumor
0.1
427
Tumor
0.1
435
Tumor
0.1
863
Tumor
0.1
357
Tumor
0.1
277
Tumor
0.1
937
Tumor
0.1
412
Normal
0.1
1042
Normal
0.1
953
Tumor
0.1
414
Normal
0.1
258
Normal
0.1
1046
Normal
0.1
212
Normal
0.1
976
Normal
0.1
1031
Tumor
0.1
428
Normal
0.1
642
Normal
0.1
558
Normal
0.0
395
Tumor
0.0
523
Tumor
0.0
914
Normal
0.0
426
Normal
0.0
874
Normal
0.0
148
Normal
0.0
443
Tumor
0.0
482
Normal
0.0
223
Tumor
0.0
528
Normal
0.0
868
Normal
0.0
358
Normal
0.0
663
Tumor
0.0
448
Normal
0.0
756
Normal
0.0
926
Normal
0.0
918
Normal
0.0
1032
Normal
0.0
851
Tumor
0.0
461
Tumor
0.0
666
Normal
0.0
864
Normal
0.0
981
Tumor
0.0
866
Normal
0.0
361
Tumor
0.0
878
Normal
0.0
641
Tumor
0.0
128
Normal
0.0
328
Normal
0.0
387
Tumor
0.0
564
Normal
0.0
858
Normal
0.0
515
Tumor
0.0
516
Normal
0.0
232
Normal
0.0
957
Tumor
0.0
466
Normal
0.0
883
Tumor
0.0
514
Normal
0.0
814
Normal
0.0
815
Tumor
0.0
865
Tumor
0.0
172
Normal
0.0
963
Tumor
0.0
954
Normal
-0.1
424
Normal
-0.1
451
Tumor
-0.1
227
Tumor
-0.1
628
Normal
-0.1
526
Normal
-0.1
365
Tumor
-0.1
283
Tumor
-0.1
568
Normal
-0.1
298
Normal
-0.1
447
Tumor
-0.1
635
Tumor
-0.1
857
Tumor
-0.1
978
Normal
-0.1
524
Normal
-0.1
1028
Normal
-0.1
553
Tumor
-0.1
214
Normal
-0.1
436
Normal
-0.1
966
Normal
-0.1
311
Tumor
-0.1
137
Tumor
-0.1
257
Tumor
-0.1
391
Tumor
-0.1
145
Tumor
-0.1
433
Tumor
-0.1
388
Normal
-0.1
415
Tumor
-0.1
617
Tumor
-0.1
228
Normal
-0.1
943
Tumor
-0.1
852
Normal
-0.1
196
Normal
-0.1
915
Tumor
-0.1
744
Normal
-0.1
353
Tumor
-0.1
125
Tumor
-0.1
817
Tumor
-0.1
823
Tumor
-0.1
342
Normal
-0.1
162
Normal
-0.2
124
Normal
-0.2
314
Normal
-0.2
636
Normal
-0.2
432
Normal
-0.2
618
Normal
-0.2
536
Normal
-0.2
217
Tumor
-0.2
221
Tumor
-0.2
481
Tumor
-0.2
1044
Normal
-0.2
755
Tumor
-0.2
455
Tumor
-0.2
916
Normal
-0.2
478
Normal
-0.2
413
Tumor
-0.2
664
Normal
-0.2
385
Tumor
-0.2
368
Normal
-0.2
423
Tumor
-0.2
195
Tumor
-0.2
421
Tumor
-0.2
284
Normal
-0.2
661
Tumor
-0.2
716
Normal
-0.2
444
Normal
-0.2
354
Normal
-0.2
367
Tumor
-0.2
463
Tumor
-0.2
392
Normal
-0.2
686
Normal
-0.2
278
Normal
-0.2
984
Normal
-0.2
393
Tumor
-0.2
574
Normal
-0.2
272
Normal
-0.2
218
Normal
-0.2
161
Tumor
-0.3
213
Tumor
-0.3
386
Normal
-0.3
142
Normal
-0.3
111
Normal
-0.3
881
Tumor
-0.3
138
Normal
-0.3
416
Normal
-0.3
396
Normal
-0.3
297
Tumor
-0.3
191
Tumor
-0.3
422
Normal
-0.3
376
Normal
-0.3
363
Tumor
-0.3
491
Tumor
-0.3
627
Tumor
-0.3
425
Tumor
-0.3
497
Tumor
-0.3
434
Normal
-0.3
135
Tumor
-0.3
136
Normal
-0.3
394
Normal
-0.3
113
Tumor
-0.3
126
Normal
-0.3
362
Normal
-0.3
332
Normal
-0.3
498
Normal
-0.3
132
Normal
-0.3
375
Tumor
-0.3
492
Normal
-0.3
313
Tumor
-0.3
271
Tumor
-0.3
672
Normal
-0.3
977
Tumor
-0.3
464
Normal
-0.4
366
Normal
-0.4
262
Normal
-0.4
468
Normal
-0.4
538
Normal
-0.4
563
Tumor
-0.4
456
Normal
-0.4
743
Tumor
-0.4
352
Normal
-0.4
211
Tumor
-0.4
917
Tumor
-0.4
452
Normal
-0.4
975
Tumor
-0.4
662
Normal
-0.4
114
Normal
-0.4
185
Tumor
-0.5
112
Tumor
-0.5
312
Normal
-0.5
188
Normal
-0.5
224
Normal
-0.5
383
Tumor
-0.5
867
Tumor
-0.5
146
Normal
-0.5
187
Tumor
-0.5
192
Normal
-0.6
384
Normal
-0.6
535
Tumor
-0.6
343
Tumor
-0.6
671
Tumor
-0.6
344
Normal
-0.6
331
Tumor
-0.6
141
Tumor
-0.6
268
Normal
-0.6
665
Tumor
-0.7
131
Tumor
-0.7
517
Tumor
-0.7
467
Tumor
-0.8
715
Tumor
-0.8
877
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
