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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPNS1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
128.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
108.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
98.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
97.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
87.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
85.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
84.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
84.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
83.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
83.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
81.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
81.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
80.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
79.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
78.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
74.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
73.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
73.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
73.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
72.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
69.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
68.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
66.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
65.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
65.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
63.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
62.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
60.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
60.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
59.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
59.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
59.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
59.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
59.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
58.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
58.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
57.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
56.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
55.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
55.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
54.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
54.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
54.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
54.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
54.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
54.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
52.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
52.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
51.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
51.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
51.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
50.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
50.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
49.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
49.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
49.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
49.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
49.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
48.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
48.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
48.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
47.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
47.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
47.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
47.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
47.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
47.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
46.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
46.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
45.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
45.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
45.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
45.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
45.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
45.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
44.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
44.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
44.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
44.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
43.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
42.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
42.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
42.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
42.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
42.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
42.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
41.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
41.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
41.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
41.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
41.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
41.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
41.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
40.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
40.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
40.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
40.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
39.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
39.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
39.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
39.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
39.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
38.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
38.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
38.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
38.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
36.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
36.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
36.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
36.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
35.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
35.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
35.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
34.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
33.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
33.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
33.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
32.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
32.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
32.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
32.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
31.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
31.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
31.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
30.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
29.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
29.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
29.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
29.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
25.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
25.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
25.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
23.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
17.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPNS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.7
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
58.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
57.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
52.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
49.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
48.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
47.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
46.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
44.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
43.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
43.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
41.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
38.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
36.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
35.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
34.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
34.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
33.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
27.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
641
Tumor
1.2
617
Tumor
0.9
571
Tumor
0.9
953
Tumor
0.7
313
Tumor
0.6
123
Tumor
0.6
435
Tumor
0.6
477
Tumor
0.6
883
Tumor
0.6
267
Tumor
0.6
421
Tumor
0.6
413
Tumor
0.5
343
Tumor
0.5
724
Normal
0.5
357
Tumor
0.5
777
Tumor
0.5
127
Tumor
0.5
387
Tumor
0.5
314
Normal
0.5
446
Normal
0.5
465
Tumor
0.5
428
Normal
0.5
367
Tumor
0.5
1027
Tumor
0.5
424
Normal
0.4
943
Tumor
0.4
685
Tumor
0.4
351
Tumor
0.4
147
Tumor
0.4
723
Tumor
0.4
965
Tumor
0.4
432
Normal
0.4
433
Tumor
0.4
573
Tumor
0.4
145
Tumor
0.4
278
Normal
0.4
663
Tumor
0.4
741
Tumor
0.4
312
Normal
0.4
125
Tumor
0.4
647
Tumor
0.3
277
Tumor
0.3
455
Tumor
0.3
388
Normal
0.3
111
Normal
0.3
473
Tumor
0.3
162
Normal
0.3
742
Normal
0.3
436
Normal
0.3
331
Tumor
0.3
332
Normal
0.3
426
Normal
0.3
635
Tumor
0.3
467
Tumor
0.3
471
Tumor
0.3
298
Normal
0.3
967
Tumor
0.3
391
Tumor
0.3
395
Tumor
0.3
464
Normal
0.3
358
Normal
0.3
451
Tumor
0.3
187
Tumor
0.3
353
Tumor
0.3
728
Normal
0.3
525
Tumor
0.3
222
Normal
0.3
425
Tumor
0.3
124
Normal
0.3
1025
Tumor
0.3
746
Normal
0.3
1013
Tumor
0.3
574
Normal
0.3
491
Tumor
0.3
297
Tumor
0.3
423
Tumor
0.2
1045
Tumor
0.2
738
Normal
0.2
445
Tumor
0.2
271
Tumor
0.2
188
Normal
0.2
221
Tumor
0.2
444
Normal
0.2
112
Tumor
0.2
386
Normal
0.2
186
Normal
0.2
824
Normal
0.2
361
Tumor
0.2
268
Normal
0.2
148
Normal
0.2
563
Tumor
0.2
218
Normal
0.2
414
Normal
0.2
366
Normal
0.2
443
Tumor
0.2
354
Normal
0.2
533
Tumor
0.2
715
Tumor
0.2
912
Normal
0.2
217
Tumor
0.2
434
Normal
0.2
272
Normal
0.2
553
Tumor
0.2
517
Tumor
0.2
618
Normal
0.2
341
Tumor
0.2
463
Tumor
0.2
697
Tumor
0.2
535
Tumor
0.2
396
Normal
0.2
195
Tumor
0.2
231
Tumor
0.1
568
Normal
0.1
342
Normal
0.1
858
Normal
0.1
422
Normal
0.1
957
Tumor
0.1
368
Normal
0.1
914
Normal
0.1
126
Normal
0.1
362
Normal
0.1
172
Normal
0.1
261
Tumor
0.1
262
Normal
0.1
214
Normal
0.1
497
Tumor
0.1
136
Normal
0.1
466
Normal
0.1
258
Normal
0.1
311
Tumor
0.1
161
Tumor
0.1
916
Normal
0.1
516
Normal
0.1
913
Tumor
0.1
223
Tumor
0.1
456
Normal
0.1
526
Normal
0.1
911
Tumor
0.1
196
Normal
0.1
744
Normal
0.1
286
Normal
0.1
468
Normal
0.1
128
Normal
0.1
545
Tumor
0.1
384
Normal
0.1
813
Tumor
0.1
394
Normal
0.1
1015
Tumor
0.1
664
Normal
0.1
662
Normal
0.1
958
Normal
0.1
666
Normal
0.1
627
Tumor
0.1
968
Normal
0.1
963
Tumor
0.1
232
Normal
0.1
383
Tumor
0.1
786
Normal
0.1
523
Tumor
0.1
474
Normal
0.1
376
Normal
0.1
554
Normal
0.1
937
Tumor
0.1
564
Normal
0.1
955
Tumor
0.1
493
Tumor
0.1
977
Tumor
0.1
864
Normal
0.1
488
Normal
0.1
695
Tumor
0.1
352
Normal
0.1
498
Normal
0.1
743
Tumor
0.1
392
Normal
0.1
882
Normal
0.0
964
Normal
0.0
135
Tumor
0.0
113
Tumor
0.0
756
Normal
0.0
616
Normal
0.0
513
Tumor
0.0
862
Normal
0.0
212
Normal
0.0
141
Tumor
0.0
818
Normal
0.0
191
Tumor
0.0
192
Normal
0.0
363
Tumor
0.0
642
Normal
0.0
938
Normal
0.0
615
Tumor
0.0
515
Tumor
0.0
344
Normal
0.0
722
Normal
0.0
462
Normal
0.0
661
Tumor
0.0
976
Normal
0.0
546
Normal
0.0
411
Tumor
0.0
952
Normal
0.0
514
Normal
0.0
737
Tumor
0.0
778
Normal
0.0
923
Tumor
0.0
185
Tumor
0.0
146
Normal
0.0
572
Normal
0.0
171
Tumor
0.0
364
Normal
0.0
978
Normal
0.0
365
Tumor
0.0
482
Normal
0.0
1014
Normal
0.0
538
Normal
0.0
472
Normal
0.0
537
Tumor
0.0
452
Normal
0.0
375
Tumor
0.0
954
Normal
0.0
224
Normal
0.0
393
Tumor
0.0
494
Normal
0.0
484
Normal
0.0
817
Tumor
0.0
356
Normal
0.0
672
Normal
0.0
492
Normal
0.0
785
Tumor
0.0
461
Tumor
0.0
328
Normal
0.0
884
Normal
-0.1
132
Normal
-0.1
648
Normal
-0.1
385
Tumor
-0.1
137
Tumor
-0.1
984
Normal
-0.1
686
Normal
-0.1
412
Normal
-0.1
944
Normal
-0.1
483
Tumor
-0.1
558
Normal
-0.1
636
Normal
-0.1
114
Normal
-0.1
138
Normal
-0.1
926
Normal
-0.1
966
Normal
-0.1
527
Tumor
-0.1
283
Tumor
-0.1
956
Normal
-0.1
816
Normal
-0.1
448
Normal
-0.1
981
Tumor
-0.1
745
Tumor
-0.1
534
Normal
-0.1
1016
Normal
-0.1
878
Normal
-0.1
877
Tumor
-0.1
713
Tumor
-0.1
975
Tumor
-0.1
716
Normal
-0.1
874
Normal
-0.1
416
Normal
-0.1
671
Tumor
-0.1
714
Normal
-0.1
983
Tumor
-0.1
257
Tumor
-0.1
925
Tumor
-0.2
1021
Tumor
-0.2
528
Normal
-0.2
696
Normal
-0.2
431
Tumor
-0.2
866
Normal
-0.2
721
Tumor
-0.2
567
Tumor
-0.2
557
Tumor
-0.2
1046
Normal
-0.2
327
Tumor
-0.2
951
Tumor
-0.2
142
Normal
-0.2
481
Tumor
-0.2
228
Normal
-0.2
873
Tumor
-0.2
1041
Tumor
-0.2
665
Tumor
-0.2
536
Normal
-0.2
982
Normal
-0.2
131
Tumor
-0.2
755
Tumor
-0.2
227
Tumor
-0.2
857
Tumor
-0.2
628
Normal
-0.2
867
Tumor
-0.2
213
Tumor
-0.2
698
Normal
-0.2
814
Normal
-0.2
1044
Normal
-0.2
427
Tumor
-0.2
518
Normal
-0.2
851
Tumor
-0.2
284
Normal
-0.2
868
Normal
-0.3
815
Tumor
-0.3
478
Normal
-0.3
1042
Normal
-0.3
1026
Normal
-0.3
863
Tumor
-0.3
922
Normal
-0.3
881
Tumor
-0.3
852
Normal
-0.3
447
Tumor
-0.3
1022
Normal
-0.3
917
Tumor
-0.3
918
Normal
-0.3
285
Tumor
-0.4
355
Tumor
-0.4
524
Normal
-0.4
211
Tumor
-0.4
823
Tumor
-0.4
924
Normal
-0.4
1032
Normal
-0.5
861
Tumor
-0.5
415
Tumor
-0.5
921
Tumor
-0.6
1028
Normal
-0.6
865
Tumor
-0.6
1043
Tumor
-0.6
487
Tumor
-0.7
727
Tumor
-0.7
1031
Tumor
-0.8
915
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
