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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFU1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
85.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
82.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
71.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
69.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
66.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
64.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
60.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
57.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
56.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
56.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
56.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
55.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
54.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
52.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
51.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
51.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
50.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
50.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
49.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
49.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
49.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
49.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
48.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
48.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
48.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
46.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
46.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
46.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
45.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
45.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
45.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
45.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
44.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
44.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
43.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
42.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
42.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
42.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
42.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
42.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
42.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
41.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
41.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
40.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
40.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
40.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
40.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
39.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
39.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
38.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
38.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
38.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
38.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
37.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
37.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
37.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
37.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
37.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
37.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
36.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
36.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
36.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
36.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
35.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
35.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
34.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
34.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
33.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
33.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
32.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
32.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
32.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
32.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
32.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
31.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
31.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
30.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
30.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
30.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
30.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
29.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
29.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
28.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
28.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
27.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
27.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
27.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
26.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
25.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
25.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
24.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
23.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFU1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.1
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
55.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
49.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
45.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
44.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
43.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
35.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
35.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
34.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.4
967
Tumor
1.2
477
Tumor
1.1
1027
Tumor
1.0
465
Tumor
1.0
627
Tumor
0.9
923
Tumor
0.9
513
Tumor
0.9
571
Tumor
0.9
695
Tumor
0.8
745
Tumor
0.8
227
Tumor
0.7
435
Tumor
0.7
915
Tumor
0.6
537
Tumor
0.6
1041
Tumor
0.6
665
Tumor
0.6
921
Tumor
0.6
641
Tumor
0.6
1043
Tumor
0.6
363
Tumor
0.6
883
Tumor
0.6
285
Tumor
0.5
471
Tumor
0.5
393
Tumor
0.5
865
Tumor
0.5
517
Tumor
0.5
1015
Tumor
0.5
724
Normal
0.4
127
Tumor
0.4
685
Tumor
0.4
411
Tumor
0.4
443
Tumor
0.4
1021
Tumor
0.4
357
Tumor
0.4
715
Tumor
0.4
137
Tumor
0.4
563
Tumor
0.4
365
Tumor
0.3
525
Tumor
0.3
487
Tumor
0.3
367
Tumor
0.3
723
Tumor
0.3
867
Tumor
0.3
713
Tumor
0.3
1022
Normal
0.3
977
Tumor
0.3
873
Tumor
0.3
473
Tumor
0.3
361
Tumor
0.3
951
Tumor
0.3
535
Tumor
0.3
391
Tumor
0.3
123
Tumor
0.3
912
Normal
0.3
145
Tumor
0.3
861
Tumor
0.3
1025
Tumor
0.3
356
Normal
0.3
1013
Tumor
0.3
376
Normal
0.3
983
Tumor
0.3
953
Tumor
0.3
786
Normal
0.3
497
Tumor
0.3
817
Tumor
0.3
741
Tumor
0.3
727
Tumor
0.3
221
Tumor
0.2
1031
Tumor
0.2
743
Tumor
0.2
515
Tumor
0.2
384
Normal
0.2
755
Tumor
0.2
341
Tumor
0.2
862
Normal
0.2
698
Normal
0.2
413
Tumor
0.2
937
Tumor
0.2
231
Tumor
0.2
488
Normal
0.2
815
Tumor
0.2
911
Tumor
0.2
926
Normal
0.2
261
Tumor
0.2
1026
Normal
0.2
114
Normal
0.2
113
Tumor
0.2
568
Normal
0.2
564
Normal
0.2
1014
Normal
0.2
851
Tumor
0.2
387
Tumor
0.2
818
Normal
0.2
858
Normal
0.2
944
Normal
0.2
884
Normal
0.2
742
Normal
0.2
452
Normal
0.1
824
Normal
0.1
965
Tumor
0.1
328
Normal
0.1
135
Tumor
0.1
191
Tumor
0.1
666
Normal
0.1
572
Normal
0.1
128
Normal
0.1
463
Tumor
0.1
355
Tumor
0.1
218
Normal
0.1
857
Tumor
0.1
553
Tumor
0.1
112
Tumor
0.1
746
Normal
0.1
526
Normal
0.1
142
Normal
0.1
514
Normal
0.1
368
Normal
0.1
918
Normal
0.1
981
Tumor
0.1
636
Normal
0.1
756
Normal
0.1
448
Normal
0.1
383
Tumor
0.1
1032
Normal
0.1
385
Tumor
0.1
924
Normal
0.1
468
Normal
0.1
186
Normal
0.1
124
Normal
0.1
388
Normal
0.1
952
Normal
0.1
466
Normal
0.1
664
Normal
0.1
957
Tumor
0.1
558
Normal
0.1
364
Normal
0.1
271
Tumor
0.1
852
Normal
0.1
491
Tumor
0.1
394
Normal
0.1
451
Tumor
0.0
462
Normal
0.0
1045
Tumor
0.0
615
Tumor
0.0
148
Normal
0.0
161
Tumor
0.0
436
Normal
0.0
955
Tumor
0.0
528
Normal
0.0
916
Normal
0.0
1044
Normal
0.0
976
Normal
0.0
922
Normal
0.0
482
Normal
0.0
432
Normal
0.0
257
Tumor
0.0
618
Normal
0.0
494
Normal
0.0
546
Normal
0.0
714
Normal
0.0
195
Tumor
0.0
414
Normal
0.0
433
Tumor
0.0
483
Tumor
0.0
785
Tumor
0.0
446
Normal
0.0
421
Tumor
0.0
534
Normal
0.0
722
Normal
0.0
1046
Normal
0.0
147
Tumor
0.0
132
Normal
0.0
1028
Normal
0.0
878
Normal
0.0
344
Normal
0.0
744
Normal
0.0
342
Normal
0.0
474
Normal
0.0
412
Normal
0.0
672
Normal
0.0
286
Normal
0.0
557
Tumor
0.0
868
Normal
-0.1
396
Normal
-0.1
964
Normal
-0.1
493
Tumor
-0.1
262
Normal
-0.1
423
Tumor
-0.1
232
Normal
-0.1
1016
Normal
-0.1
332
Normal
-0.1
222
Normal
-0.1
866
Normal
-0.1
187
Tumor
-0.1
696
Normal
-0.1
984
Normal
-0.1
567
Tumor
-0.1
538
Normal
-0.1
426
Normal
-0.1
648
Normal
-0.1
267
Tumor
-0.1
628
Normal
-0.1
416
Normal
-0.1
823
Tumor
-0.1
223
Tumor
-0.1
728
Normal
-0.1
914
Normal
-0.1
954
Normal
-0.1
136
Normal
-0.1
642
Normal
-0.1
298
Normal
-0.1
352
Normal
-0.1
484
Normal
-0.1
214
Normal
-0.1
456
Normal
-0.1
938
Normal
-0.1
131
Tumor
-0.1
366
Normal
-0.1
697
Tumor
-0.1
464
Normal
-0.1
415
Tumor
-0.1
196
Normal
-0.1
422
Normal
-0.1
481
Tumor
-0.1
362
Normal
-0.1
975
Tumor
-0.1
392
Normal
-0.1
968
Normal
-0.1
536
Normal
-0.1
554
Normal
-0.1
272
Normal
-0.1
498
Normal
-0.1
882
Normal
-0.1
958
Normal
-0.1
574
Normal
-0.1
268
Normal
-0.1
258
Normal
-0.1
428
Normal
-0.1
314
Normal
-0.1
533
Tumor
-0.1
461
Tumor
-0.1
467
Tumor
-0.1
171
Tumor
-0.1
111
Normal
-0.1
138
Normal
-0.1
472
Normal
-0.2
278
Normal
-0.2
963
Tumor
-0.2
778
Normal
-0.2
662
Normal
-0.2
141
Tumor
-0.2
162
Normal
-0.2
1042
Normal
-0.2
146
Normal
-0.2
358
Normal
-0.2
524
Normal
-0.2
978
Normal
-0.2
721
Tumor
-0.2
982
Normal
-0.2
616
Normal
-0.2
816
Normal
-0.2
185
Tumor
-0.2
375
Tumor
-0.2
434
Normal
-0.2
297
Tumor
-0.2
386
Normal
-0.2
716
Normal
-0.2
874
Normal
-0.2
172
Normal
-0.2
738
Normal
-0.2
913
Tumor
-0.2
424
Normal
-0.2
864
Normal
-0.2
635
Tumor
-0.2
737
Tumor
-0.2
217
Tumor
-0.2
354
Normal
-0.2
956
Normal
-0.2
518
Normal
-0.2
188
Normal
-0.2
671
Tumor
-0.2
523
Tumor
-0.2
213
Tumor
-0.2
353
Tumor
-0.2
427
Tumor
-0.2
516
Normal
-0.2
545
Tumor
-0.2
686
Normal
-0.2
966
Normal
-0.3
327
Tumor
-0.3
228
Normal
-0.3
617
Tumor
-0.3
425
Tumor
-0.3
444
Normal
-0.3
881
Tumor
-0.3
478
Normal
-0.3
312
Normal
-0.3
431
Tumor
-0.3
313
Tumor
-0.3
351
Tumor
-0.3
492
Normal
-0.3
126
Normal
-0.3
777
Tumor
-0.3
863
Tumor
-0.3
814
Normal
-0.3
527
Tumor
-0.3
663
Tumor
-0.3
447
Tumor
-0.3
943
Tumor
-0.4
395
Tumor
-0.4
647
Tumor
-0.4
311
Tumor
-0.4
284
Normal
-0.4
125
Tumor
-0.4
455
Tumor
-0.4
224
Normal
-0.5
813
Tumor
-0.5
877
Tumor
-0.5
192
Normal
-0.5
445
Tumor
-0.5
573
Tumor
-0.5
277
Tumor
-0.6
212
Normal
-0.6
331
Tumor
-0.6
661
Tumor
-0.6
211
Tumor
-0.7
917
Tumor
-0.7
283
Tumor
-0.8
343
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
