MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.7 nTPM
HPA Brain:37.6 nTPM
GTEx:22.7 nTPM
FANTOM5:48.7 Scaled Tags Per Million
Pig:37.6 nTPM
Mouse:36.1 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.9
2586 Male, age 75, left hemisphere 35.8
2019 Male, age 18, unknown 34.6
2828 Female, age 72, unknown 34.6
1830 Male, age 51, unknown 33.7
1870 Female, age 42, unknown 33.7
1827 Male, age 72, unknown 32.7
2411 Female, age 72, unknown 32.1
2219 Male, age 76, both hemispheres 30.6
1833 Male, age 53, unknown 30.4
2666 Male, age 74, left hemisphere 30.4
Dorsal raphe nucleus
nTPM: 30.1
2750 Male, age 76, both hemispheres 34.2
2047 Male, age 72, unknown 30.6
1828 Male, age 53, unknown 30.0
2016 Female, age 72, unknown 28.7
2298 Female, age 72, unknown 27.1
Inferior colliculus
nTPM: 27.5
2849 Male, age 72, unknown 30.0
1890 Male, age 53, unknown 28.6
1848 Female, age 42, unknown 26.8
2097 Female, age 72, unknown 24.6
Median raphe nucleus
nTPM: 37.6
2220 Male, age 76, midline 37.6
Periaquaductal grey, anterior
nTPM: 31.7
1795 Male, age 51, unknown 34.5
1947 Male, age 18, unknown 30.4
2502 Female, age 75, unknown 30.2
Periaquaductal grey, dorsal
nTPM: 26.7
2850 Male, age 76, both hemispheres 28.0
1831 Male, age 72, unknown 27.6
2464 Female, age 72, unknown 25.7
1840 Male, age 53, unknown 25.5
Periaquaductal grey, lateral
nTPM: 30.3
2272 Male, age 74, both hemispheres 35.3
2053 Male, age 18, unknown 29.9
2140 Male, age 76, both hemispheres 25.7
Pretectal area
nTPM: 31.9
1815 Male, age 53, unknown 35.5
1817 Female, age 42, unknown 34.6
2007 Male, age 72, unknown 33.8
2667 Female, age 75, unknown 33.7
1816 Male, age 51, unknown 33.5
2407 Male, age 75, both hemispheres 32.6
1944 Female, age 72, unknown 31.7
2825 Male, age 18, unknown 29.7
2273 Male, age 74, both hemispheres 29.0
2224 Female, age 72, unknown 28.8
2316 Male, age 76, right hemisphere 28.1
Red nucleus
nTPM: 35.8
2725 Female, age 75, unknown 38.3
1954 Female, age 42, unknown 37.6
2584 Male, age 75, left hemisphere 37.3
2823 Male, age 76, right hemisphere 37.0
1865 Male, age 51, unknown 36.6
1904 Male, age 53, unknown 36.5
2785 Male, age 18, unknown 36.4
2769 Male, age 72, unknown 36.1
1821 Female, age 72, unknown 35.4
2503 Female, age 72, unknown 33.5
2227 Male, age 72, unknown 32.9
2588 Male, age 74, left hemisphere 31.5
Substantia nigra
nTPM: 33.2
2583 Male, age 75, right hemisphere 39.9
1916 Female, age 42, unknown 37.4
1851 Male, age 51, unknown 35.7
2699 Male, age 18, unknown 35.1
2665 Male, age 74, both hemispheres 33.5
1941 Male, age 53, unknown 33.4
1889 Female, age 72, unknown 31.9
2409 Female, age 72, unknown 31.0
2590 Female, age 75, unknown 27.5
2241 Male, age 72, unknown 27.1
Superior colliculus
nTPM: 33.9
2664 Male, age 75, both hemispheres 37.6
2668 Female, age 75, unknown 37.4
1913 Female, age 42, unknown 37.3
1995 Male, age 72, unknown 36.1
2587 Male, age 74, left hemisphere 34.5
1796 Male, age 53, unknown 33.4
2261 Male, age 18, unknown 33.1
2087 Female, age 72, unknown 31.6
1839 Male, age 51, unknown 29.2
1895 Male, age 76, right hemisphere 29.2
Ventral tegmental area
nTPM: 31.5
2223 Female, age 72, unknown 35.1
1915 Female, age 42, unknown 32.8
2410 Female, age 72, unknown 32.0
2218 Male, age 76, both hemispheres 31.3
2021 Male, age 53, unknown 30.0
1942 Male, age 51, unknown 27.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.7
Samples: 139

Max nTPM: 37.4
Min nTPM: 13.7
Std nTPM: 4.6
Median nTPM: 22.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 37.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 37.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 36.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 32.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 32.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 31.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 30.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 30.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 29.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 29.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 29.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.7
FF:10158-103A5 76 years, female 48.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.0
Samples: 4

Max nTPM: 41.3
Min nTPM: 29.5
Sample A Female 39.6
Sample B Female 29.5
Sample C Male 41.3
Sample D Male 29.6
Midbrain
nTPM: 36.0
Samples: 4

Max nTPM: 40.7
Min nTPM: 30.3
Sample A Female 30.3
Sample B Female 33.4
Sample C Male 39.5
Sample D Male 40.7
Periaqueductal gray
nTPM: 32.4
Samples: 3

Max nTPM: 37.4
Min nTPM: 29.9
Sample B Female 30.0
Sample C Male 37.4
Sample D Male 29.9
Superior colliculi
nTPM: 37.7
Samples: 4

Max nTPM: 43.3
Min nTPM: 29.0
Sample A Female 43.3
Sample B Female 29.0
Sample C Male 38.2
Sample D Male 40.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 37.4
Min nTPM: 32.2
Sample A Male 37.4
Sample B Male 32.2
Sample C Female 37.2
Sample D Female 37.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
67815968 Antisense, RP_040920_02_D11, Mouse strain C57BL/6J (56 days, male) 5.8
76135829 Antisense, RP_060518_01_A10, Mouse strain C57BL/6J (56 days, male) 0.9
68861994 Antisense, RP_050301_01_C08, Mouse strain C57BL/6J (56 days, male) 0.3

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