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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
116.0
nTPM
FANTOM5:
249.1
Scaled Tags Per Million
Pig:
311.5
nTPM
Allen mouse:
7.5
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
116.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 67.7
2188
Female, age 91, both hemispheres
76.1
1984
Male, age 76, both hemispheres
71.9
2090
Male, age 80, both hemispheres
69.1
2301
Female, age 85, both hemispheres
53.8
Dorsal cochlear nucleus nTPM: 75.1
2802
Male, age 74, right hemisphere
91.6
2187
Female, age 91, both hemispheres
75.7
2058
Male, age 76, both hemispheres
71.2
2370
Male, age 61, both hemispheres
69.2
2378
Male, age 80, both hemispheres
67.7
Dorsal tegmental nucleus nTPM: 78.3
2326
Male, age 74, both hemispheres
95.1
2083
Male, age 80, both hemispheres
89.9
1936
Male, age 76, left hemisphere
65.2
2358
Male, age 61, both hemispheres
63.2
Dorsolateral tegmental area nTPM: 81.3
2751
Female, age 85, both hemispheres
105.5
2654
Male, age 80, both hemispheres
95.9
2360
Male, age 74, both hemispheres
80.6
2337
Male, age 61, both hemispheres
64.3
2141
Male, age 76, both hemispheres
60.2
Kolliker-Fuse nucleus nTPM: 87.0
2163
Male, age 80, both hemispheres
101.1
2315
Male, age 76, right hemisphere
89.1
2793
Female, age 91, left hemisphere
70.9
Lateral lemniscal nuclei nTPM: 97.5
2036
Male, age 80, both hemispheres
128.9
2746
Female, age 85, left hemisphere
107.8
2169
Male, age 76, both hemispheres
107.7
2453
Male, age 74, right hemisphere
80.6
2320
Female, age 91, left hemisphere
62.6
Lateral parabrachial nucleus nTPM: 89.0
2139
Female, age 85, right hemisphere
102.1
2013
Male, age 80, both hemispheres
98.1
2790
Male, age 61, both hemispheres
83.5
2792
Male, age 76, both hemispheres
72.3
Lateral vestibular nucleus nTPM: 76.8
2184
Male, age 76, both hemispheres
86.6
2311
Male, age 80, both hemispheres
67.1
Locus coeruleus nTPM: 101.0
2123
Female, age 91, both hemispheres
130.5
2014
Male, age 55, unknown
123.8
2788
Male, age 74, unknown
101.4
2317
Female, age 72, unknown
97.0
2720
Male, age 74, both hemispheres
91.2
1980
Male, age 76, both hemispheres
88.0
2162
Male, age 80, both hemispheres
75.1
Medial parabrachial nucleus nTPM: 84.6
2170
Female, age 91, both hemispheres
107.2
2463
Female, age 85, right hemisphere
90.4
2854
Male, age 80, both hemispheres
77.1
2786
Male, age 76, both hemispheres
74.6
2156
Male, age 61, both hemispheres
73.6
Medial periolivary nuclei nTPM: 93.9
2063
Male, age 76, both hemispheres
124.2
2791
Male, age 74, right hemisphere
113.3
2171
Female, age 85, both hemispheres
105.5
2081
Male, age 80, both hemispheres
70.0
2458
Female, age 91, both hemispheres
56.3
Motor facial nucleus nTPM: 84.6
2062
Male, age 76, both hemispheres
131.9
2365
Male, age 74, right hemisphere
97.2
2795
Female, age 91, both hemispheres
80.5
2126
Male, age 61, both hemispheres
74.6
2697
Female, age 85, both hemispheres
65.3
2327
Male, age 80, both hemispheres
58.4
Motor trigeminal nucleus nTPM: 73.9
2079
Male, age 80, both hemispheres
85.5
2560
Male, age 74, both hemispheres
82.9
2309
Male, age 76, both hemispheres
80.4
2335
Male, age 61, both hemispheres
63.5
2321
Female, age 91, both hemispheres
57.1
Nuclei of the trapezoid body nTPM: 96.8
1983
Male, age 76, both hemispheres
128.7
2735
Female, age 85, both hemispheres
110.4
2159
Male, age 61, both hemispheres
109.1
2166
Male, age 80, both hemispheres
70.6
2368
Female, age 91, both hemispheres
65.1
Nucleus raphe magnus nTPM: 95.7
2160
Male, age 61, both hemispheres
149.5
2051
Male, age 76, both hemispheres
96.1
2172
Female, age 85, both hemispheres
95.7
2455
Male, age 74, both hemispheres
94.2
2328
Male, age 80, both hemispheres
69.9
2459
Female, age 91, both hemispheres
68.5
Paramedian reticular nucleus nTPM: 101.5
2050
Female, age 85, both hemispheres
121.0
2057
Male, age 80, both hemispheres
107.9
2052
Male, age 76, both hemispheres
90.8
2313
Male, age 61, both hemispheres
86.3
Pedunculopontine tegmental nucleus nTPM: 81.8
2334
Male, age 80, both hemispheres
83.9
1921
Female, age 85, both hemispheres
81.6
2338
Male, age 61, both hemispheres
79.8
Pontine nuclei nTPM: 116.0
2727
Male, age 61, right hemisphere
179.9
1863
Male, age 55, unknown
148.8
2787
Female, age 85, both hemispheres
129.5
2109
Female, age 72, unknown
117.4
1968
Male, age 76, left hemisphere
112.6
2454
Male, age 74, left hemisphere
98.5
2319
Female, age 91, both hemispheres
76.8
2115
Male, age 80, left hemisphere
64.9
Pontine raphe nucleus nTPM: 100.2
2122
Female, age 85, midline
115.8
2853
Male, age 76, midline
84.5
Posteroventral cochlear nucleus nTPM: 80.7
2752
Female, age 85, both hemispheres
101.2
2070
Male, age 76, both hemispheres
80.6
2341
Male, age 80, both hemispheres
78.2
2371
Male, age 61, both hemispheres
72.7
2135
Female, age 91, both hemispheres
70.9
Principal sensory trigeminal nucleus nTPM: 91.6
2158
Male, age 61, both hemispheres
119.9
2008
Male, age 80, left hemisphere
107.5
2324
Male, age 76, both hemispheres
73.4
2367
Female, age 91, left hemisphere
65.6
Reticular pontine nucleus, caudal nTPM: 84.8
2092
Male, age 76, both hemispheres
104.0
2559
Male, age 74, both hemispheres
91.0
2457
Female, age 91, both hemispheres
73.5
2332
Male, age 80, right hemisphere
70.6
Reticular pontine nucleus, oral nTPM: 88.4
2012
Female, age 85, both hemispheres
119.9
1939
Male, age 80, both hemispheres
92.4
2361
Male, age 74, both hemispheres
87.6
2167
Male, age 76, both hemispheres
75.3
2366
Female, age 91, both hemispheres
67.0
Reticulotegmental nucleus nTPM: 76.2
2325
Male, age 76, both hemispheres
86.5
2452
Male, age 74, both hemispheres
78.3
2333
Male, age 80, both hemispheres
70.1
2322
Female, age 91, both hemispheres
70.0
Spinal trigeminal nucleus, oral nTPM: 85.5
2737
Female, age 85, both hemispheres
105.2
2164
Male, age 80, both hemispheres
77.5
1978
Male, age 76, both hemispheres
73.8
Subcoeruleus area nTPM: 89.6
1958
Male, age 80, both hemispheres
95.6
2369
Female, age 85, left hemisphere
94.3
2451
Male, age 74, both hemispheres
88.4
2323
Female, age 91, left hemisphere
87.8
2089
Male, age 76, left hemisphere
82.0
Superior olive nTPM: 92.3
1875
Female, age 85, both hemispheres
131.5
2020
Male, age 76, both hemispheres
116.5
2364
Male, age 74, right hemisphere
96.5
2329
Male, age 80, right hemisphere
61.2
2561
Female, age 91, both hemispheres
55.8
Ventral periolivary nuclei nTPM: 91.9
2023
Male, age 76, both hemispheres
123.4
2165
Male, age 80, both hemispheres
94.8
2130
Female, age 85, both hemispheres
81.3
2794
Female, age 91, left hemisphere
68.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 79.9
1959
Male, age 76, both hemispheres
94.9
2449
Male, age 74, both hemispheres
90.8
2840
Female, age 85, both hemispheres
83.2
2359
Male, age 61, both hemispheres
76.9
2161
Male, age 80, both hemispheres
73.3
2456
Female, age 91, both hemispheres
60.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
311.5
Pig sample
Sample description
nTPM
Pons nTPM: 311.5
Samples: 4
Max nTPM: 390.3
Min nTPM: 201.2
Sample A
Female
390.3
Sample B
Female
201.2
Sample C
Male
337.4
Sample D
Male
317.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
