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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDC2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
194.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
856.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
699.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
645.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
637.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
611.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
607.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
605.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
562.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
554.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
536.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
530.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
522.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
519.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
505.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
502.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
495.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
461.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
459.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
451.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
446.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
444.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
441.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
440.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
438.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
433.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
421.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
419.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
400.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
399.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
393.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
388.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
388.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
386.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
384.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
378.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
375.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
374.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
357.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
351.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
347.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
339.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
336.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
334.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
331.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
329.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
322.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
311.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
308.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
307.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
307.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
304.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
303.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
300.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
299.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
299.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
296.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
294.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
291.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
291.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
288.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
288.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
283.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
280.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
279.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
278.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
275.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
274.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
274.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
273.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
271.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
271.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
268.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
266.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
266.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
266.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
263.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
262.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
261.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
259.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
258.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
257.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
257.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
256.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
256.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
253.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
253.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
252.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
249.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
246.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
244.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
242.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
238.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
237.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
237.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
234.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
233.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
232.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
232.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
231.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
231.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
230.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
228.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
228.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
227.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
226.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
226.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
226.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
225.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
225.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
224.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
223.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
222.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
222.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
221.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
220.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
220.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
219.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
219.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
219.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
218.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
217.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
217.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
216.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
215.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
215.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
214.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
211.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
210.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
210.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
210.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
208.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
207.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
207.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
205.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
205.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
205.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
205.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
204.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
204.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
203.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
203.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
197.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
195.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
193.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
193.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
192.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
191.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
191.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
191.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
189.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
187.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
187.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
186.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
185.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
185.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
184.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
183.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
182.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
182.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
181.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
181.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
181.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
180.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
180.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
178.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
177.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
177.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
176.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
176.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
175.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
174.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
173.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
172.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
171.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
171.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
171.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
170.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
169.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
168.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
163.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
163.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
162.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
160.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
160.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
159.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
159.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
158.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
157.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
155.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
153.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
153.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
153.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
152.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
152.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
151.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
150.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
150.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
150.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
149.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
148.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
148.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
147.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
147.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
146.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
145.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
144.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
144.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
143.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
143.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
142.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
142.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
142.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
142.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
141.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
141.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
141.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
140.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
139.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
138.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
137.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
136.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
136.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
134.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
134.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
133.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
133.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
133.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
132.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
132.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
131.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
130.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
130.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
130.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
129.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
127.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
127.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
126.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
126.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
126.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
125.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
125.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
125.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
124.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
123.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
122.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
121.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
119.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
118.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
118.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
118.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
117.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
117.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
116.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
116.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
116.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
116.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
115.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
114.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
114.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
112.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
112.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
112.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
112.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
111.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
111.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
111.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
111.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
109.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
108.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
107.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
107.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
107.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
106.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
105.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
105.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
104.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
104.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
104.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
102.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
102.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
102.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
101.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
101.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
101.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
101.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
100.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
100.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
100.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
99.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
99.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
96.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
95.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
95.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
95.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
94.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
93.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
93.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
92.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
92.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
89.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
88.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
88.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
88.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
87.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
86.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
86.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
85.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
84.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
84.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
83.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
83.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
80.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
77.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
76.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
75.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
75.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
75.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
75.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
75.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
68.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
68.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
65.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
65.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
64.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
60.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
60.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
58.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
57.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
57.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
56.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
56.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
56.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
55.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
55.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
54.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
54.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
53.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
53.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
51.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
50.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
49.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
49.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
47.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
47.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
47.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
45.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
45.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
42.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
42.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
41.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
39.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
39.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
38.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
37.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
25.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDC2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
135.7
Number of samples
231
Samples
Sample
Description
TPM
DO23516
0 years, male, NA, stage:3, dead, 20 days
622.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
613.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
516.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
457.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
411.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
406.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
405.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
404.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
387.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
363.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
339.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
339.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
332.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
328.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
319.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
304.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
302.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
280.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
277.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
275.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
274.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
272.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
271.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
262.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
255.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
244.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
242.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
238.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
232.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
221.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
218.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
217.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
215.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
215.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
214.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
213.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
208.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
207.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
202.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
199.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
199.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
198.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
198.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
196.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
193.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
192.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
191.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
183.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
183.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
182.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
180.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
171.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
170.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
168.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
168.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
168.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
167.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
165.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
164.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
164.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
163.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
163.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
161.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
161.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
160.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
159.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
157.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
156.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
155.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
153.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
152.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
152.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
151.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
151.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
150.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
148.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
148.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
148.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
148.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
147.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
147.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
145.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
145.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
144.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
142.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
141.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
138.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
138.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
137.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
135.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
135.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
132.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
132.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
130.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
129.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
125.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
125.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
123.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
123.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
122.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
121.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
121.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
119.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
118.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
117.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
117.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
115.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
115.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
113.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
113.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
113.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
112.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
112.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
112.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
111.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
110.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
110.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
110.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
109.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
108.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
108.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
107.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
107.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
107.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
106.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
106.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
106.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
104.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
104.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
102.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
101.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
100.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
100.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
98.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
97.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
97.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
97.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
96.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
94.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
94.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
93.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
93.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
93.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
91.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
91.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
90.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
89.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
89.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
88.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
88.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
88.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
87.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
87.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
86.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
86.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
85.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
85.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
85.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
84.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
84.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
84.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
83.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
83.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
83.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
79.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
78.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
75.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
74.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
74.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
74.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
74.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
74.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
73.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
72.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
71.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
71.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
71.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
70.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
69.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
67.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
67.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
67.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
67.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
66.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
65.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
64.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
64.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
63.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
63.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
61.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
61.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
61.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
58.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
57.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
56.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
54.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
53.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
53.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
52.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
52.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
49.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
47.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
45.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
42.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
39.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
38.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
34.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
30.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
3.1
363
Tumor
2.3
112
Tumor
2.0
865
Tumor
1.9
231
Tumor
1.8
641
Tumor
1.8
967
Tumor
1.7
715
Tumor
1.7
425
Tumor
1.6
951
Tumor
1.6
131
Tumor
1.5
975
Tumor
1.5
483
Tumor
1.5
471
Tumor
1.5
473
Tumor
1.5
671
Tumor
1.4
341
Tumor
1.4
883
Tumor
1.4
877
Tumor
1.4
1015
Tumor
1.3
221
Tumor
1.3
557
Tumor
1.3
517
Tumor
1.3
277
Tumor
1.2
1025
Tumor
1.2
443
Tumor
1.2
463
Tumor
1.1
1021
Tumor
1.1
331
Tumor
1.1
881
Tumor
1.1
743
Tumor
1.1
537
Tumor
1.1
665
Tumor
1.1
493
Tumor
1.0
873
Tumor
1.0
385
Tumor
1.0
817
Tumor
0.9
977
Tumor
0.9
227
Tumor
0.9
567
Tumor
0.9
185
Tumor
0.9
391
Tumor
0.8
445
Tumor
0.8
271
Tumor
0.8
421
Tumor
0.8
553
Tumor
0.8
1041
Tumor
0.8
663
Tumor
0.8
965
Tumor
0.7
1031
Tumor
0.7
823
Tumor
0.7
617
Tumor
0.7
745
Tumor
0.6
387
Tumor
0.6
713
Tumor
0.6
351
Tumor
0.6
727
Tumor
0.5
921
Tumor
0.5
435
Tumor
0.5
147
Tumor
0.5
257
Tumor
0.5
545
Tumor
0.5
135
Tumor
0.5
685
Tumor
0.5
343
Tumor
0.5
863
Tumor
0.5
737
Tumor
0.5
963
Tumor
0.4
195
Tumor
0.4
1013
Tumor
0.4
267
Tumor
0.4
127
Tumor
0.4
395
Tumor
0.4
635
Tumor
0.4
1027
Tumor
0.4
187
Tumor
0.4
286
Normal
0.3
957
Tumor
0.3
861
Tumor
0.3
497
Tumor
0.3
477
Tumor
0.2
431
Tumor
0.2
563
Tumor
0.2
161
Tumor
0.2
171
Tumor
0.2
353
Tumor
0.2
937
Tumor
0.2
851
Tumor
0.1
867
Tumor
0.1
123
Tumor
0.1
915
Tumor
0.0
433
Tumor
0.0
223
Tumor
0.0
527
Tumor
0.0
213
Tumor
0.0
695
Tumor
0.0
451
Tumor
0.0
415
Tumor
0.0
297
Tumor
0.0
943
Tumor
0.0
647
Tumor
-0.1
523
Tumor
-0.1
113
Tumor
-0.1
313
Tumor
-0.1
375
Tumor
-0.1
573
Tumor
-0.1
145
Tumor
-0.1
217
Tumor
-0.1
857
Tumor
-0.1
355
Tumor
-0.1
913
Tumor
-0.1
413
Tumor
-0.1
191
Tumor
-0.2
911
Tumor
-0.2
461
Tumor
-0.2
533
Tumor
-0.2
427
Tumor
-0.2
923
Tumor
-0.2
813
Tumor
-0.2
283
Tumor
-0.3
393
Tumor
-0.3
615
Tumor
-0.3
467
Tumor
-0.3
361
Tumor
-0.3
755
Tumor
-0.3
741
Tumor
-0.3
666
Normal
-0.3
455
Tumor
-0.3
487
Tumor
-0.4
137
Tumor
-0.4
981
Tumor
-0.4
311
Tumor
-0.4
814
Normal
-0.4
938
Normal
-0.4
642
Normal
-0.4
976
Normal
-0.5
697
Tumor
-0.5
141
Tumor
-0.5
423
Tumor
-0.5
484
Normal
-0.5
648
Normal
-0.5
958
Normal
-0.5
983
Tumor
-0.5
721
Tumor
-0.5
815
Tumor
-0.5
964
Normal
-0.5
696
Normal
-0.6
744
Normal
-0.6
525
Tumor
-0.6
1043
Tumor
-0.6
546
Normal
-0.6
742
Normal
-0.6
866
Normal
-0.6
1046
Normal
-0.6
716
Normal
-0.6
465
Tumor
-0.6
411
Tumor
-0.6
982
Normal
-0.6
416
Normal
-0.6
364
Normal
-0.6
426
Normal
-0.6
664
Normal
-0.6
261
Tumor
-0.6
114
Normal
-0.6
571
Tumor
-0.6
818
Normal
-0.6
436
Normal
-0.6
661
Tumor
-0.7
1045
Tumor
-0.7
966
Normal
-0.7
724
Normal
-0.7
422
Normal
-0.7
954
Normal
-0.7
356
Normal
-0.7
662
Normal
-0.7
538
Normal
-0.7
925
Tumor
-0.7
125
Tumor
-0.7
192
Normal
-0.7
515
Tumor
-0.7
1022
Normal
-0.7
824
Normal
-0.7
428
Normal
-0.7
412
Normal
-0.8
944
Normal
-0.8
686
Normal
-0.8
968
Normal
-0.8
332
Normal
-0.8
924
Normal
-0.8
1016
Normal
-0.8
498
Normal
-0.8
672
Normal
-0.8
535
Tumor
-0.8
314
Normal
-0.8
312
Normal
-0.8
414
Normal
-0.8
618
Normal
-0.8
424
Normal
-0.8
432
Normal
-0.8
554
Normal
-0.8
882
Normal
-0.8
212
Normal
-0.8
278
Normal
-0.8
162
Normal
-0.8
572
Normal
-0.8
447
Tumor
-0.8
481
Tumor
-0.8
492
Normal
-0.9
536
Normal
-0.9
284
Normal
-0.9
714
Normal
-0.9
146
Normal
-0.9
878
Normal
-0.9
627
Tumor
-0.9
214
Normal
-0.9
723
Tumor
-0.9
953
Tumor
-0.9
494
Normal
-0.9
518
Normal
-0.9
738
Normal
-0.9
142
Normal
-0.9
1014
Normal
-0.9
514
Normal
-0.9
444
Normal
-0.9
272
Normal
-0.9
884
Normal
-0.9
472
Normal
-0.9
474
Normal
-0.9
228
Normal
-0.9
862
Normal
-0.9
526
Normal
-0.9
196
Normal
-0.9
367
Tumor
-0.9
222
Normal
-0.9
916
Normal
-0.9
218
Normal
-0.9
1044
Normal
-0.9
852
Normal
-1.0
468
Normal
-1.0
864
Normal
-1.0
262
Normal
-1.0
298
Normal
-1.0
1026
Normal
-1.0
568
Normal
-1.0
491
Tumor
-1.0
785
Tumor
-1.0
952
Normal
-1.0
462
Normal
-1.0
172
Normal
-1.0
357
Tumor
-1.0
111
Normal
-1.0
132
Normal
-1.0
528
Normal
-1.0
448
Normal
-1.0
956
Normal
-1.0
482
Normal
-1.0
756
Normal
-1.0
456
Normal
-1.0
984
Normal
-1.0
268
Normal
-1.0
148
Normal
-1.0
1032
Normal
-1.0
516
Normal
-1.0
136
Normal
-1.0
258
Normal
-1.0
978
Normal
-1.0
926
Normal
-1.0
478
Normal
-1.1
922
Normal
-1.1
446
Normal
-1.1
186
Normal
-1.1
488
Normal
-1.1
534
Normal
-1.1
188
Normal
-1.1
452
Normal
-1.1
466
Normal
-1.1
464
Normal
-1.1
698
Normal
-1.1
524
Normal
-1.1
917
Tumor
-1.1
912
Normal
-1.1
777
Tumor
-1.1
558
Normal
-1.1
434
Normal
-1.1
786
Normal
-1.1
124
Normal
-1.2
914
Normal
-1.2
955
Tumor
-1.2
728
Normal
-1.2
328
Normal
-1.2
874
Normal
-1.2
126
Normal
-1.2
327
Tumor
-1.2
858
Normal
-1.2
868
Normal
-1.2
628
Normal
-1.2
918
Normal
-1.2
224
Normal
-1.2
746
Normal
-1.2
722
Normal
-1.2
128
Normal
-1.2
386
Normal
-1.2
354
Normal
-1.2
816
Normal
-1.2
1028
Normal
-1.2
513
Tumor
-1.2
616
Normal
-1.2
232
Normal
-1.2
636
Normal
-1.3
365
Tumor
-1.3
1042
Normal
-1.3
342
Normal
-1.3
778
Normal
-1.3
344
Normal
-1.3
574
Normal
-1.3
564
Normal
-1.3
138
Normal
-1.4
394
Normal
-1.4
376
Normal
-1.4
383
Tumor
-1.4
368
Normal
-1.4
396
Normal
-1.4
392
Normal
-1.4
388
Normal
-1.5
358
Normal
-1.5
352
Normal
-1.6
366
Normal
-1.6
384
Normal
-1.6
211
Tumor
-1.6
362
Normal
-1.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.