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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CXCL10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
613.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
547.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
268.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
263.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
263.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
237.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
218.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
170.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
161.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
161.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
149.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
147.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
126.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
123.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
123.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
121.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
120.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
119.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
108.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
106.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
100.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
98.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
94.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
93.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
92.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
90.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
86.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
84.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
75.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
74.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
74.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
72.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
71.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
69.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
68.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
68.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
67.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
67.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
65.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
65.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
60.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
60.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
55.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
55.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
55.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
54.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
53.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
53.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
51.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
51.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
50.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
49.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
46.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
46.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
45.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
45.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
44.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
43.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
42.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
42.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
42.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
42.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
41.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
41.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
41.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
40.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
40.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
39.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
39.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
39.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
39.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
36.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
34.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
34.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
33.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
32.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
32.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
29.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
24.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
23.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CXCL10 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.5
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1400.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
543.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
478.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
405.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
400.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
384.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
374.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
308.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
252.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
246.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
230.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
215.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
211.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
208.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
184.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
177.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
156.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
154.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
143.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
127.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
123.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
122.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
111.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
110.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
107.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
101.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
101.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
100.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
96.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
96.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
93.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
93.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
93.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
92.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
89.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
86.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
85.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
81.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
77.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
76.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
74.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
70.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
69.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
68.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
68.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
68.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
68.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
65.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
65.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
64.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
64.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
62.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
61.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
61.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
60.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
57.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
57.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
56.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
56.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
55.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
53.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
53.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
53.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
52.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
49.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
48.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
48.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
47.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
47.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
47.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
45.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
44.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
43.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
43.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
41.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
40.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
40.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
39.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
38.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
37.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
37.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
36.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
36.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
36.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
35.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
35.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
34.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
34.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.