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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LMAN2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
234.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
609.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
536.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
528.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
518.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
456.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
452.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
446.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
445.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
440.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
433.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
420.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
411.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
395.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
393.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
388.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
387.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
384.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
383.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
377.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
368.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
367.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
365.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
365.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
362.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
357.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
355.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
354.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
354.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
352.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
349.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
348.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
348.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
348.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
345.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
340.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
340.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
340.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
337.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
334.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
334.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
334.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
332.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
331.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
331.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
330.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
329.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
327.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
327.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
325.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
325.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
325.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
323.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
322.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
320.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
320.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
320.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
319.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
318.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
318.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
318.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
315.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
315.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
314.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
312.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
312.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
311.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
311.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
310.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
309.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
308.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
308.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
307.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
306.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
304.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
304.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
303.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
302.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
302.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
301.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
301.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
299.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
298.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
298.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
297.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
295.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
294.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
291.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
288.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
287.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
287.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
286.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
284.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
284.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
283.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
282.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
281.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
280.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
279.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
278.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
278.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
276.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
275.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
275.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
274.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
271.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
267.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
267.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
266.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
265.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
265.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
265.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
264.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
263.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
263.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
262.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
261.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
261.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
261.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
260.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
259.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
259.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
259.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
259.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
258.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
256.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
256.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
256.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
255.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
255.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
254.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
253.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
253.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
253.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
252.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
251.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
251.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
251.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
250.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
250.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
250.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
248.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
248.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
247.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
246.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
244.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
244.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
243.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
242.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
239.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
239.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
239.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
238.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
237.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
237.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
237.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
236.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
236.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
236.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
236.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
236.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
235.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
234.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
234.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
233.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
233.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
232.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
231.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
231.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
231.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
230.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
230.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
230.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
229.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
229.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
228.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
227.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
227.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
227.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
225.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
224.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
223.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
223.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
223.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
222.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
222.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
222.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
221.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
221.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
221.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
220.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
220.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
220.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
220.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
219.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
218.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
218.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
216.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
216.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
216.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
215.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
215.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
214.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
212.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
211.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
210.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
209.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
208.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
208.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
207.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
207.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
205.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
204.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
204.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
203.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
203.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
202.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
202.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
201.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
201.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
200.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
200.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
199.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
199.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
199.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
199.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
199.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
198.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
198.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
197.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
197.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
196.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
196.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
194.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
194.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
192.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
191.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
191.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
191.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
190.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
190.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
190.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
189.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
188.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
188.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
187.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
187.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
187.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
187.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
186.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
184.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
184.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
183.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
183.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
182.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
182.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
182.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
180.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
179.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
178.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
177.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
176.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
176.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
176.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
176.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
176.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
174.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
174.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
171.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
171.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
171.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
170.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
169.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
169.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
168.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
168.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
167.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
167.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
166.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
165.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
165.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
165.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
165.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
163.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
163.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
163.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
162.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
162.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
162.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
162.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
161.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
161.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
160.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
160.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
158.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
158.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
158.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
158.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
158.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
157.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
156.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
156.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
156.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
156.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
155.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
155.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
155.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
154.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
154.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
154.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
154.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
154.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
153.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
153.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
153.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
153.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
151.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
151.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
151.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
150.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
150.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
145.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
144.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
144.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
142.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
141.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
140.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
137.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
136.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
136.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
135.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
135.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
135.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
134.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
134.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
132.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
131.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
129.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
128.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
127.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
122.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
121.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
119.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
119.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
119.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
117.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
116.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
113.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
112.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
110.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
104.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
104.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
103.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
100.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
100.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
90.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
90.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
89.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
89.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
86.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
85.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
80.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LMAN2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
130.9
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
556.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
283.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
260.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
256.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
242.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
234.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
223.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
223.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
221.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
220.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
220.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
219.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
218.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
217.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
215.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
214.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
214.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
214.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
210.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
202.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
202.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
199.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
198.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
198.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
197.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
191.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
189.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
188.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
187.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
187.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
184.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
184.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
182.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
181.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
180.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
180.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
177.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
174.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
173.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
173.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
173.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
173.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
172.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
172.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
171.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
170.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
166.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
166.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
166.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
165.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
164.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
163.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
162.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
161.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
161.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
161.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
160.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
157.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
157.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
156.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
155.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
155.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
155.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
154.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
153.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
153.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
151.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
151.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
150.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
149.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
149.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
149.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
148.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
148.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
146.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
146.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
146.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
146.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
145.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
145.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
144.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
144.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
143.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
143.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
142.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
142.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
141.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
141.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
137.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
135.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
134.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
134.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
133.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
133.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
133.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
132.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
130.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
130.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
130.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
130.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
130.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
130.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
129.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
128.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
127.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
126.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
126.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
125.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
124.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
123.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
123.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
122.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
122.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
122.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
121.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
120.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
120.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
120.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
119.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
118.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
117.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
117.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
117.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
116.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
116.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
115.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
115.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
115.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
115.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
114.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
114.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
113.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
113.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
113.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
112.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
112.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
111.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
111.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
111.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
111.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
110.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
110.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
110.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
109.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
109.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
109.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
109.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
108.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
108.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
107.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
107.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
107.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
107.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
106.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
106.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
106.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
106.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
106.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
105.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
105.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
104.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
104.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
102.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
101.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
101.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
101.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
100.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
100.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
99.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
96.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
95.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
95.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
94.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
94.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
93.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
93.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
93.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
92.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
92.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
92.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
90.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
90.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
89.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
89.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
88.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
87.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
87.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
86.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
86.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
86.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
85.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
84.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
84.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
83.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
82.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
81.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
81.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
80.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
80.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
79.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
79.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
78.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
77.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
76.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
75.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
74.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
74.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
74.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
73.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
73.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
71.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
70.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
68.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
68.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
63.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
62.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
61.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
61.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
61.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
60.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
59.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
58.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
57.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
56.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
55.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
55.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
53.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
53.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
51.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
48.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
47.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
353
Tumor
0.7
435
Tumor
0.7
257
Tumor
0.7
615
Tumor
0.6
911
Tumor
0.6
443
Tumor
0.5
533
Tumor
0.5
553
Tumor
0.5
261
Tumor
0.5
171
Tumor
0.5
487
Tumor
0.4
523
Tumor
0.4
147
Tumor
0.4
123
Tumor
0.4
1027
Tumor
0.4
755
Tumor
0.4
527
Tumor
0.4
745
Tumor
0.4
387
Tumor
0.4
1025
Tumor
0.4
861
Tumor
0.4
925
Tumor
0.4
867
Tumor
0.4
357
Tumor
0.4
351
Tumor
0.4
557
Tumor
0.3
647
Tumor
0.3
713
Tumor
0.3
231
Tumor
0.3
953
Tumor
0.3
187
Tumor
0.3
411
Tumor
0.3
635
Tumor
0.3
636
Normal
0.3
223
Tumor
0.3
685
Tumor
0.3
426
Normal
0.3
937
Tumor
0.3
746
Normal
0.3
1014
Normal
0.3
452
Normal
0.2
915
Tumor
0.2
497
Tumor
0.2
467
Tumor
0.2
686
Normal
0.2
431
Tumor
0.2
445
Tumor
0.2
128
Normal
0.2
142
Normal
0.2
227
Tumor
0.2
341
Tumor
0.2
1022
Normal
0.2
955
Tumor
0.2
1021
Tumor
0.2
554
Normal
0.2
813
Tumor
0.2
221
Tumor
0.2
327
Tumor
0.2
137
Tumor
0.2
423
Tumor
0.2
741
Tumor
0.2
738
Normal
0.2
913
Tumor
0.2
331
Tumor
0.2
938
Normal
0.2
723
Tumor
0.2
471
Tumor
0.2
862
Normal
0.2
145
Tumor
0.2
648
Normal
0.2
742
Normal
0.2
851
Tumor
0.2
466
Normal
0.2
195
Tumor
0.2
951
Tumor
0.2
977
Tumor
0.1
981
Tumor
0.1
111
Normal
0.1
616
Normal
0.1
1043
Tumor
0.1
721
Tumor
0.1
546
Normal
0.1
628
Normal
0.1
571
Tumor
0.1
342
Normal
0.1
232
Normal
0.1
572
Normal
0.1
944
Normal
0.1
358
Normal
0.1
114
Normal
0.1
191
Tumor
0.1
436
Normal
0.1
1026
Normal
0.1
432
Normal
0.1
728
Normal
0.1
696
Normal
0.1
463
Tumor
0.1
878
Normal
0.1
534
Normal
0.1
778
Normal
0.1
923
Tumor
0.1
451
Tumor
0.1
267
Tumor
0.1
952
Normal
0.1
568
Normal
0.1
393
Tumor
0.1
922
Normal
0.1
481
Tumor
0.1
124
Normal
0.1
354
Normal
0.1
361
Tumor
0.1
412
Normal
0.1
468
Normal
0.1
727
Tumor
0.1
132
Normal
0.1
1032
Normal
0.1
1016
Normal
0.1
714
Normal
0.1
212
Normal
0.1
127
Tumor
0.1
866
Normal
0.1
414
Normal
0.0
912
Normal
0.0
356
Normal
0.0
448
Normal
0.0
344
Normal
0.0
258
Normal
0.0
618
Normal
0.0
1044
Normal
0.0
1028
Normal
0.0
715
Tumor
0.0
698
Normal
0.0
392
Normal
0.0
394
Normal
0.0
332
Normal
0.0
984
Normal
0.0
196
Normal
0.0
564
Normal
0.0
924
Normal
0.0
777
Tumor
0.0
422
Normal
0.0
484
Normal
0.0
352
Normal
0.0
957
Tumor
0.0
918
Normal
0.0
262
Normal
0.0
376
Normal
0.0
284
Normal
0.0
271
Tumor
0.0
214
Normal
0.0
135
Tumor
0.0
1041
Tumor
0.0
716
Normal
0.0
228
Normal
0.0
864
Normal
0.0
558
Normal
0.0
641
Tumor
0.0
218
Normal
0.0
314
Normal
0.0
494
Normal
0.0
528
Normal
0.0
816
Normal
0.0
563
Tumor
0.0
926
Normal
0.0
222
Normal
0.0
138
Normal
0.0
464
Normal
0.0
278
Normal
0.0
743
Tumor
0.0
388
Normal
0.0
172
Normal
0.0
148
Normal
0.0
824
Normal
0.0
852
Normal
0.0
368
Normal
0.0
956
Normal
0.0
978
Normal
0.0
395
Tumor
0.0
916
Normal
0.0
823
Tumor
0.0
873
Tumor
0.0
186
Normal
0.0
328
Normal
0.0
446
Normal
0.0
474
Normal
0.0
724
Normal
0.0
424
Normal
0.0
428
Normal
0.0
695
Tumor
0.0
965
Tumor
0.0
642
Normal
0.0
664
Normal
0.0
355
Tumor
0.0
756
Normal
0.0
113
Tumor
0.0
162
Normal
0.0
515
Tumor
0.0
286
Normal
0.0
1015
Tumor
0.0
136
Normal
0.0
272
Normal
0.0
526
Normal
-0.1
488
Normal
-0.1
514
Normal
-0.1
627
Tumor
-0.1
966
Normal
-0.1
914
Normal
-0.1
492
Normal
-0.1
964
Normal
-0.1
968
Normal
-0.1
363
Tumor
-0.1
518
Normal
-0.1
868
Normal
-0.1
982
Normal
-0.1
277
Tumor
-0.1
1042
Normal
-0.1
396
Normal
-0.1
434
Normal
-0.1
573
Tumor
-0.1
477
Tumor
-0.1
141
Tumor
-0.1
462
Normal
-0.1
785
Tumor
-0.1
362
Normal
-0.1
976
Normal
-0.1
958
Normal
-0.1
364
Normal
-0.1
884
Normal
-0.1
366
Normal
-0.1
574
Normal
-0.1
524
Normal
-0.1
882
Normal
-0.1
465
Tumor
-0.1
416
Normal
-0.1
213
Tumor
-0.1
786
Normal
-0.1
722
Normal
-0.1
456
Normal
-0.1
954
Normal
-0.1
877
Tumor
-0.1
744
Normal
-0.1
1046
Normal
-0.1
536
Normal
-0.1
473
Tumor
-0.1
663
Tumor
-0.1
386
Normal
-0.1
126
Normal
-0.1
444
Normal
-0.1
298
Normal
-0.1
516
Normal
-0.1
383
Tumor
-0.2
662
Normal
-0.2
146
Normal
-0.2
312
Normal
-0.2
672
Normal
-0.2
268
Normal
-0.2
865
Tumor
-0.2
817
Tumor
-0.2
921
Tumor
-0.2
385
Tumor
-0.2
818
Normal
-0.2
535
Tumor
-0.2
858
Normal
-0.2
883
Tumor
-0.2
285
Tumor
-0.2
874
Normal
-0.2
881
Tumor
-0.2
1045
Tumor
-0.2
482
Normal
-0.2
697
Tumor
-0.2
567
Tumor
-0.2
131
Tumor
-0.2
217
Tumor
-0.2
384
Normal
-0.2
112
Tumor
-0.2
224
Normal
-0.2
478
Normal
-0.2
538
Normal
-0.2
188
Normal
-0.2
365
Tumor
-0.2
415
Tumor
-0.2
472
Normal
-0.2
983
Tumor
-0.2
666
Normal
-0.2
447
Tumor
-0.2
814
Normal
-0.2
433
Tumor
-0.3
1031
Tumor
-0.3
192
Normal
-0.3
461
Tumor
-0.3
185
Tumor
-0.3
517
Tumor
-0.3
161
Tumor
-0.3
963
Tumor
-0.3
857
Tumor
-0.3
427
Tumor
-0.3
737
Tumor
-0.3
491
Tumor
-0.3
493
Tumor
-0.3
313
Tumor
-0.4
665
Tumor
-0.4
863
Tumor
-0.4
375
Tumor
-0.4
917
Tumor
-0.4
671
Tumor
-0.4
967
Tumor
-0.4
975
Tumor
-0.4
413
Tumor
-0.4
498
Normal
-0.5
1013
Tumor
-0.5
513
Tumor
-0.5
545
Tumor
-0.5
617
Tumor
-0.5
391
Tumor
-0.5
815
Tumor
-0.5
343
Tumor
-0.5
125
Tumor
-0.6
211
Tumor
-0.6
425
Tumor
-0.6
367
Tumor
-0.6
421
Tumor
-0.6
483
Tumor
-0.7
297
Tumor
-0.7
537
Tumor
-0.7
943
Tumor
-0.7
455
Tumor
-0.7
311
Tumor
-0.7
525
Tumor
-0.9
283
Tumor
-1.0
661
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.