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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAMP5 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.1
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
53.3
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
40.6
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
40.1
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
39.8
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
39.0
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
38.0
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
35.1
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
33.6
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
33.5
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
32.9
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
31.9
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
30.4
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
30.3
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
29.9
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
29.8
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
29.1
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
29.0
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
27.8
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
26.8
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
26.1
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
25.9
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
23.0
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
21.7
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
21.5
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
21.2
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
20.6
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
20.6
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
20.5
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
20.4
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
20.4
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
20.2
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
20.2
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
19.7
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
19.1
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
19.0
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
19.0
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
18.9
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
17.5
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
17.3
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
17.2
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
16.8
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
16.3
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
15.8
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
15.0
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
14.7
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
14.3
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
14.0
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
13.9
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
12.9
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
12.4
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
12.3
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
12.1
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
12.1
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
11.5
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
11.2
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
10.8
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
10.6
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
9.7
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
8.8
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
8.2
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
8.0
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
7.8
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
6.6
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAMP5 is not prognostic in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
120.7
Number of samples
521
Samples
Sample
Description
TPM
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
539.3
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
329.4
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
290.0
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
282.4
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
274.6
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
263.7
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
259.3
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
248.4
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
237.1
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
236.6
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
232.0
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
225.4
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
223.8
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
223.8
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
223.1
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
221.2
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
218.8
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
218.2
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
217.2
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
214.6
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
212.3
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
210.2
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
208.8
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
208.3
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
205.5
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
205.3
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
204.0
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
203.8
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
202.5
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
201.9
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
200.7
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
198.7
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
198.3
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
194.5
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
193.8
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
193.4
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
193.0
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
191.5
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
190.5
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
189.5
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
189.3
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
186.2
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
184.6
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
184.1
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
183.0
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
182.0
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
181.9
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
180.8
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
180.3
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
179.1
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
178.3
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
178.2
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
177.6
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
177.6
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
174.6
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
174.6
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
174.4
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
174.0
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
173.4
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
173.0
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
172.8
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
171.3
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
169.8
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
169.8
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
168.5
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
168.2
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
168.0
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
167.9
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
167.6
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
167.0
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
166.7
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
166.5
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
165.8
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
165.3
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
165.3
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
165.0
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
164.1
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
164.0
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
163.7
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
163.3
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
161.9
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
161.7
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
161.4
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
161.0
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
160.6
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
160.4
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
160.1
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
160.0
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
159.8
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
159.7
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
159.4
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
159.4
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
159.3
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
159.1
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
158.3
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
157.1
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
156.7
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
156.6
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
156.3
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
156.2
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
156.0
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
155.6
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
155.3
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
154.9
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
154.9
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
154.8
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
153.9
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
153.5
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
153.2
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
153.1
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
152.9
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
152.8
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
152.4
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
152.1
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
152.0
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
151.9
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
151.8
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
151.3
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
150.9
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
150.4
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
150.4
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
149.9
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
149.8
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
149.0
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
148.5
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
148.4
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
148.0
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
147.8
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
147.7
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
147.6
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
147.6
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
147.2
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
147.2
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
146.8
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
146.8
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
146.4
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
146.3
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
146.0
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
146.0
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
145.7
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
145.7
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
145.1
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
145.0
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
144.3
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
144.0
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
144.0
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
143.8
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
143.7
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
143.4
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
143.3
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
143.1
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
142.1
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
141.9
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
140.9
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
140.8
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
140.8
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
140.7
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
140.7
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
140.7
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
140.6
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
140.4
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
139.8
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
139.2
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
139.1
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
139.1
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
139.0
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
139.0
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
139.0
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
139.0
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
138.4
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
138.1
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
138.0
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
137.8
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
137.5
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
137.3
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
137.3
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
136.7
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
136.7
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
136.3
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
136.1
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
136.0
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
135.9
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
135.8
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
135.8
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
135.7
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
135.5
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
135.4
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
135.0
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
135.0
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
134.6
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
134.5
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
134.4
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
133.7
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
133.4
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
132.9
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
132.1
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
132.1
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
131.8
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
131.7
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
131.6
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
131.4
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
131.0
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
130.6
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
130.5
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
130.4
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
130.4
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
130.1
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
129.3
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
129.2
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
128.9
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
128.6
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
128.4
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
128.2
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
128.0
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
128.0
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
127.1
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
126.7
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
126.2
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
126.1
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
126.1
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
125.7
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
125.6
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
125.5
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
125.2
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
125.0
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
124.8
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
124.4
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
124.2
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
123.9
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
123.7
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
123.5
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
123.5
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
123.2
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
123.1
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
122.8
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
122.7
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
122.7
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
122.6
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
122.0
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
121.9
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
121.8
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
121.4
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
120.8
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
120.6
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
120.3
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
120.2
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
120.1
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
120.0
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
118.9
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
118.5
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
118.2
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
117.8
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
117.5
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
117.1
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
116.8
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
116.8
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
116.7
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
116.2
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
116.2
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
115.8
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
115.7
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
115.6
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
115.5
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
115.4
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
115.3
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
115.2
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
115.1
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
115.1
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
115.1
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
115.0
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
114.8
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
114.2
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
114.2
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
114.1
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
114.1
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
114.0
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
113.4
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
113.3
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
113.2
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
113.1
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
113.0
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
112.8
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
112.6
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
112.2
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
112.2
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
112.1
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
111.3
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
110.4
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
110.3
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
110.2
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
110.2
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
109.9
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
109.5
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
109.5
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
108.6
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
108.5
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
108.4
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
108.3
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
108.2
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
108.2
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
108.2
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
108.1
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
108.1
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
108.0
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
108.0
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
107.9
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
107.7
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
107.6
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
107.6
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
107.6
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
107.4
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
107.3
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
107.3
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
105.9
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
105.8
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
105.4
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
105.2
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
105.1
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
105.0
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
104.9
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
104.5
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
104.5
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
104.5
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
104.2
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
104.1
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
103.9
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
103.8
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
103.7
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
103.6
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
103.5
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
103.3
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
103.0
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
102.9
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
102.8
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
102.7
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
102.6
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
102.3
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
102.0
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
101.9
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
101.6
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
101.5
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
101.5
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
101.3
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
101.1
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
100.9
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
100.8
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
100.8
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
100.6
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
100.6
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
100.1
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
99.9
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
99.8
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
99.6
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
99.4
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
99.3
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
99.2
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
98.8
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
98.7
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
98.5
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
98.3
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
97.9
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
97.9
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
97.8
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
97.8
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
97.6
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
96.8
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
96.8
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
96.7
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
96.1
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
95.4
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
95.3
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
94.8
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
94.6
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
94.4
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
94.0
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
93.9
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
93.8
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
92.8
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
92.7
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
92.1
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
91.6
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
91.4
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
91.3
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
91.0
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
91.0
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
90.8
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
90.6
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
90.2
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
90.0
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
89.5
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
89.4
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
89.4
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
89.1
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
89.1
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
88.9
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
88.7
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
88.3
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
88.3
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
88.3
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
88.0
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
87.9
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
87.9
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
87.6
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
87.3
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
87.0
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
86.9
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
86.9
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
86.9
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
86.8
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
86.8
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
86.6
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
86.1
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
86.1
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
86.1
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
84.7
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
84.0
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
83.5
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
83.3
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
83.3
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
83.2
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
82.8
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
82.7
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
82.2
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
82.0
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
82.0
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
81.9
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
81.8
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
81.8
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
81.4
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
80.6
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
80.5
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
80.4
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
80.4
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
80.1
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
80.0
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
79.9
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
79.7
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
79.5
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
79.3
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
79.3
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
79.2
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
78.8
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
78.7
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
78.2
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
77.6
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
76.6
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
76.5
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
75.6
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
75.5
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
75.5
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
75.3
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
74.7
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
74.4
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
74.3
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
72.8
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
72.5
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
71.2
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
70.4
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
69.8
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
69.2
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
69.1
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
68.5
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
68.4
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
67.4
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
67.3
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
67.2
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
66.6
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
66.6
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
66.2
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
66.0
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
65.1
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
64.3
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
64.0
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
61.6
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
60.8
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
59.9
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
58.8
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
58.1
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
57.9
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
57.6
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
56.5
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
56.3
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
55.8
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
55.5
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
55.2
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
55.0
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
54.6
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
54.0
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
53.0
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
51.3
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
49.5
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
48.6
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
48.4
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
44.6
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
43.1
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
42.7
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
42.5
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
36.5
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
35.3
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
35.1
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
27.8
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
24.7
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
24.2
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
23.8
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
20.6
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
19.8
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
19.7
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
19.2
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
17.2
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
17.0
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
16.6
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
16.5
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
16.0
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
15.3
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
14.5
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
13.2
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
12.7
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
12.2
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
10.8
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
10.2
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAMP5 is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
109.9
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
366.2
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
221.2
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
185.7
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
184.1
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
176.0
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
168.8
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
163.9
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
159.9
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
158.2
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
157.9
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
157.7
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
157.5
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
154.0
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
152.2
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
150.5
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
144.9
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
143.7
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
142.8
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
142.0
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
136.9
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
135.8
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
133.0
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
130.8
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
130.6
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
129.3
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
126.5
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
124.6
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
122.8
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
122.8
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
120.8
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
120.7
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
120.4
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
120.1
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
119.2
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
117.5
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
114.9
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
112.5
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
112.4
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
112.0
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
109.9
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
109.8
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
109.6
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
109.4
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
109.1
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
108.6
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
108.6
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
107.8
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
107.6
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
106.1
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
104.9
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
104.9
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
104.4
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
103.9
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
102.2
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
100.8
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
99.7
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
98.8
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
98.8
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
98.4
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
98.0
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
95.3
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
94.8
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
94.8
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
94.7
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
93.7
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
92.5
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
92.4
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
92.3
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
91.5
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
91.1
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
90.7
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
89.2
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
88.8
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
88.2
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
86.5
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
86.5
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
85.5
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
82.4
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
81.8
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
80.9
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
80.3
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
79.9
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
78.4
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
76.8
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
74.1
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
74.0
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
73.6
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
70.5
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
65.7
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
64.4
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
63.6
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
63.6
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
62.1
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
59.2
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
54.0
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
51.2
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
50.1
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
41.2
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
32.4
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAMP5 is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
63.3
Number of samples
282
Samples
Sample
Description
TPM
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
295.5
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
259.0
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
224.4
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
224.4
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
220.6
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
180.0
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
165.0
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
155.6
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
155.0
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
149.4
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
148.0
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
141.8
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
141.3
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
139.7
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
132.2
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
132.1
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
130.3
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
130.1
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
128.9
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
127.5
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
123.3
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
118.0
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
117.7
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
117.6
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
116.0
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
114.1
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
110.9
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
107.7
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
106.3
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
105.8
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
105.7
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
105.4
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
103.4
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
102.2
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
100.2
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
98.2
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
96.4
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
95.9
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
94.7
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
94.6
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
94.4
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
93.4
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
93.0
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
92.9
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
92.8
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
91.8
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
91.4
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
91.3
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
91.2
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
90.9
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
87.8
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
87.2
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
86.9
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
86.2
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
85.6
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
83.8
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
83.1
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
83.0
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
81.9
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
81.8
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
81.8
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
80.8
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
80.0
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
79.7
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
79.3
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
78.9
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
78.7
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
78.0
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
77.4
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
77.4
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
77.1
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
75.8
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
75.6
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
75.2
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
75.1
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
74.9
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
74.7
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
74.6
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
74.6
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
74.5
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
74.3
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
74.2
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
74.0
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
73.8
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
73.8
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
72.7
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
72.3
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
72.0
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
71.9
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
71.8
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
71.5
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
70.6
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
70.5
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
70.4
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
70.2
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
70.0
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
69.8
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
69.7
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
69.0
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
68.9
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
68.4
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
68.3
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
67.6
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
66.7
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
66.6
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
65.9
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
65.7
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
65.6
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
65.2
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
64.9
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
64.4
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
63.9
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
63.9
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
63.3
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
62.5
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
62.4
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
62.2
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
61.8
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
61.6
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
61.5
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
60.6
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
60.6
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
60.2
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
59.4
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
59.3
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
59.3
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
58.8
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
58.4
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
58.4
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
58.2
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
58.2
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
57.9
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
57.9
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
57.5
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
57.5
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
57.5
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
57.2
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
57.2
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
57.0
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
56.6
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
56.5
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
56.5
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
56.5
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
56.1
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
56.0
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
56.0
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
56.0
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
55.7
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
54.9
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
54.9
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
54.9
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
54.5
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
54.1
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
53.4
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
52.9
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
52.3
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
51.9
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
51.7
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
51.7
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
51.3
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
51.3
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
50.8
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
50.6
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
50.1
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
49.8
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
48.9
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
48.3
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
47.7
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
47.6
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
47.5
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
47.1
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
47.1
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
46.2
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
46.2
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
45.6
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
45.4
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
45.2
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
45.0
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
45.0
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
45.0
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
44.6
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
44.5
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
44.5
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
44.3
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
44.0
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
44.0
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
43.8
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
43.7
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
43.6
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
43.5
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
42.6
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
42.6
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
41.7
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
41.2
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
40.9
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
40.8
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
40.7
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
40.4
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
40.1
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
40.1
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
40.0
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
39.8
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
39.3
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
39.0
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
39.0
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
38.8
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
38.2
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
38.1
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
38.1
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
37.5
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
36.8
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
36.5
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
36.1
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
35.8
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
35.8
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.7
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
35.7
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
35.6
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
35.3
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
34.9
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
34.8
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
34.5
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
34.2
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
34.1
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
33.0
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
32.6
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
32.5
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
32.4
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
32.3
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
32.0
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
31.7
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
31.0
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
31.0
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
30.8
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
30.6
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
30.6
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
30.5
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
30.4
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
30.3
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
30.2
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
30.0
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
29.8
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
29.3
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
28.9
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
28.7
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
27.9
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
27.9
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
27.5
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
27.0
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
26.9
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
26.1
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
25.8
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
25.7
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
25.1
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
24.7
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
24.7
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
24.3
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
23.5
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
23.3
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
22.4
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
22.3
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
21.7
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
21.5
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
19.9
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
19.9
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
19.8
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
19.7
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
18.6
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
17.9
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
17.8
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
16.3
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
16.0
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
15.9
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
15.3
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
13.6
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
13.3
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
11.6
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
11.4
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
10.8
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
6.8
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
0.0
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
0.0
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0078990003
Tumor
1.3
CPT0092160003
Tumor
1.3
CPT0025350003
Tumor
1.2
CPT0087040003
Tumor
1.1
CPT0001260009
Tumor
1.1
CPT0071150004
Tumor
1.0
CPT0079380003
Tumor
1.0
CPT0010160003
Tumor
1.0
CPT0078830003
Tumor
0.9
CPT0092730003
Tumor
0.9
CPT0079480003
Tumor
0.8
CPT0088630003
Tumor
0.8
CPT0077490003
Tumor
0.8
CPT0006900003
Tumor
0.8
CPT0000870016
Tumor
0.8
CPT0014370004
Tumor
0.8
CPT0075720003
Tumor
0.8
CPT0065430003
Tumor
0.7
CPT0088480003
Tumor
0.7
CPT0015730003
Tumor
0.7
CPT0076330003
Tumor
0.7
CPT0065870003
Tumor
0.7
CPT0086950003
Tumor
0.7
CPT0023350003
Tumor
0.6
CPT0025050003
Tumor
0.6
CPT0075130003
Tumor
0.6
CPT0001180009
Tumor
0.6
CPT0001500009
Tumor
0.6
CPT0000640003
Tumor
0.6
CPT0010110003
Tumor
0.6
CPT0065810003
Tumor
0.6
CPT0006440003
Tumor
0.6
CPT0088760003
Tumor
0.6
CPT0079410003
Tumor
0.5
CPT0065690003
Tumor
0.5
CPT0086870003
Tumor
0.5
CPT0025230003
Tumor
0.5
CPT0089460004
Tumor
0.5
CPT0012370003
Tumor
0.5
CPT0089020003
Tumor
0.5
CPT0025880003
Tumor
0.5
CPT0086360003
Tumor
0.5
CPT0019130003
Tumor
0.5
CPT0000780007
Tumor
0.5
CPT0088690003
Tumor
0.5
CPT0020120003
Tumor
0.5
CPT0001540009
Tumor
0.5
CPT0026410003
Tumor
0.4
CPT0079230003
Tumor
0.4
CPT0007320003
Tumor
0.4
CPT0025110003
Tumor
0.4
CPT0012180003
Tumor
0.4
CPT0077110003
Tumor
0.3
CPT0001220008
Tumor
0.3
CPT0015810003
Tumor
0.3
CPT0063630003
Tumor
0.3
CPT0015910003
Tumor
0.3
CPT0023690003
Tumor
0.3
CPT0078930003
Tumor
0.3
CPT0011410003
Tumor
0.2
CPT0006630003
Tumor
0.2
CPT0063320003
Tumor
0.2
CPT0019990003
Tumor
0.2
CPT0064370003
Tumor
0.1
CPT0065750003
Tumor
0.1
CPT0066470004
Tumor
0.1
CPT0092790003
Tumor
0.1
CPT0025580004
Tumor
0.1
CPT0002350011
Tumor
0.1
CPT0007860003
Tumor
0.1
CPT0012280003
Tumor
0.1
CPT0075560003
Tumor
0.1
CPT0065930003
Tumor
0.1
CPT0077310003
Tumor
0.1
CPT0086030003
Tumor
0.1
CPT0088550004
Tumor
0.0
CPT0012550003
Tumor
0.0
CPT0017410003
Tumor
0.0
CPT0069000003
Tumor
0.0
CPT0081600003
Tumor
0.0
CPT0014160003
Tumor
0.0
CPT0066480003
Tumor
0.0
CPT0006950001
Normal
0.0
CPT0077320001
Normal
0.0
CPT0012080003
Tumor
0.0
CPT0009000003
Tumor
-0.1
CPT0001340003
Tumor
-0.1
CPT0088900003
Tumor
-0.1
CPT0079270003
Tumor
-0.1
CPT0081880003
Tumor
-0.1
CPT0086820003
Tumor
-0.1
CPT0023360001
Normal
-0.1
CPT0006530001
Normal
-0.2
CPT0014450004
Tumor
-0.2
CPT0025170003
Tumor
-0.2
CPT0011240003
Tumor
-0.2
CPT0025290003
Tumor
-0.2
CPT0025610001
Normal
-0.2
CPT0081620001
Normal
-0.2
CPT0000660001
Normal
-0.2
CPT0075170001
Normal
-0.2
CPT0088640003
Normal
-0.2
CPT0020020001
Normal
-0.2
CPT0001270001
Normal
-0.2
CPT0001550001
Normal
-0.2
CPT0085670003
Tumor
-0.2
CPT0002370001
Normal
-0.2
CPT0088710001
Normal
-0.2
CPT0001350001
Normal
-0.3
CPT0077140001
Normal
-0.3
CPT0012670003
Tumor
-0.3
CPT0017850003
Tumor
-0.3
CPT0020130001
Normal
-0.3
CPT0066430001
Normal
-0.3
CPT0025060001
Normal
-0.3
CPT0086890003
Normal
-0.3
CPT0076350001
Normal
-0.3
CPT0081990003
Tumor
-0.3
CPT0024670003
Tumor
-0.3
CPT0092190003
Normal
-0.3
CPT0010120001
Normal
-0.3
CPT0066520001
Normal
-0.3
CPT0079300001
Normal
-0.4
CPT0026420001
Normal
-0.4
CPT0089040001
Normal
-0.4
CPT0078940001
Normal
-0.4
CPT0092290003
Tumor
-0.4
CPT0088970003
Tumor
-0.4
CPT0078800003
Tumor
-0.4
CPT0010170001
Normal
-0.4
CPT0017450001
Normal
-0.4
CPT0063640001
Normal
-0.4
CPT0025920001
Normal
-0.4
CPT0079510001
Normal
-0.4
CPT0089480003
Normal
-0.4
CPT0078670001
Normal
-0.4
CPT0092310003
Normal
-0.4
CPT0065450001
Normal
-0.4
CPT0019160001
Normal
-0.4
CPT0014130001
Normal
-0.4
CPT0087050003
Normal
-0.4
CPT0075570001
Normal
-0.5
CPT0001190001
Normal
-0.5
CPT0063330001
Normal
-0.5
CPT0088570001
Normal
-0.5
CPT0000790001
Normal
-0.5
CPT0069010001
Normal
-0.5
CPT0009060003
Tumor
-0.5
CPT0001510001
Normal
-0.5
CPT0012900004
Tumor
-0.5
CPT0001230001
Normal
-0.5
CPT0084560003
Tumor
-0.5
CPT0086970003
Normal
-0.5
CPT0014470001
Normal
-0.5
CPT0088920001
Normal
-0.5
CPT0000890001
Normal
-0.6
CPT0078840001
Normal
-0.6
CPT0086370003
Normal
-0.6
CPT0079430001
Normal
-0.6
CPT0082010001
Normal
-0.6
CPT0078530001
Normal
-0.6
CPT0007470001
Normal
-0.6
CPT0023710001
Normal
-0.6
CPT0014350001
Normal
-0.6
CPT0088780001
Normal
-0.6
CPT0009020003
Normal
-0.6
CPT0064400001
Normal
-0.6
CPT0012640003
Normal
-0.6
CPT0077500001
Normal
-0.6
CPT0088500001
Normal
-0.7
CPT0007870001
Normal
-0.7
CPT0065820001
Normal
-0.7
CPT0021240003
Tumor
-0.7
CPT0079180003
Tumor
-0.7
CPT0012290003
Normal
-0.7
CPT0084590001
Normal
-0.7
CPT0013790003
Normal
-0.7
CPT0079000001
Normal
-0.7
CPT0069190001
Normal
-0.7
CPT0078660003
Tumor
-0.7
CPT0012090003
Normal
-0.7
CPT0012920003
Normal
-0.7
CPT0092740003
Normal
-0.8
CPT0086830003
Normal
-0.8
CPT0078510003
Tumor
-0.8
CPT0024680001
Normal
-0.8
CPT0092800003
Normal
-0.8
CPT0006730001
Normal
-0.9
CPT0002270011
Tumor
-0.9
CPT0012570003
Normal
-0.9
CPT0069160003
Tumor
-0.9
CPT0018250001
Normal
-1.0
CPT0009080003
Normal
-1.0
CPT0012770003
Normal
-1.3
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
