We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAMP5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
105.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
381.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
381.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
324.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
322.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
305.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
291.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
285.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
273.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
270.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
260.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
243.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
241.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
238.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
229.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
228.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
227.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
221.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
220.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
218.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
208.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
206.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
202.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
201.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
201.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
198.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
194.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
192.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
189.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
187.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
187.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
186.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
183.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
180.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
177.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
174.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
173.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
172.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
172.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
171.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
170.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
167.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
164.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
163.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
162.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
162.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
161.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
160.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
160.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
158.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
155.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
155.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
153.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
153.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
153.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
152.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
151.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
151.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
151.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
150.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
148.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
148.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
146.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
145.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
145.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
144.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
144.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
143.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
143.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
143.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
142.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
142.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
141.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
141.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
139.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
139.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
139.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
137.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
136.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
136.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
136.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
134.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
134.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
133.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
133.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
133.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
133.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
132.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
131.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
131.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
131.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
130.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
129.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
129.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
129.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
128.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
127.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
126.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
124.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
124.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
123.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
121.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
121.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
121.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
120.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
120.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
120.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
120.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
119.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
119.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
118.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
118.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
117.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
117.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
116.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
115.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
115.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
115.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
114.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
114.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
114.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
113.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
113.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
112.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
112.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
112.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
111.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
111.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
111.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
110.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
110.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
109.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
109.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
108.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
108.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
108.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
108.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
108.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
106.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
106.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
106.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
105.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
105.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
104.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
103.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
103.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
102.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
102.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
102.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
101.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
101.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
99.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
99.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
99.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
99.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
99.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
98.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
98.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
98.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
97.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
97.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
97.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
96.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
96.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
96.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
95.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
95.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
95.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
94.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
94.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
94.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
94.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
93.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
93.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
93.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
92.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
92.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
91.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
91.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
91.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
91.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
90.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
90.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
90.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
89.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
89.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
89.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
89.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
89.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
89.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
89.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
88.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
88.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
88.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
88.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
88.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
88.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
87.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
87.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
87.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
87.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
87.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
87.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
87.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
86.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
86.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
86.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
86.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
85.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
85.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
85.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
85.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
84.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
84.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
84.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
83.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
83.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
83.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
83.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
83.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
83.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
82.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
82.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
81.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
81.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
81.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
81.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
80.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
79.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
79.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
79.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
79.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
79.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
77.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
77.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
76.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
75.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
75.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
75.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
75.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
75.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
74.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
74.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
74.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
74.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
74.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
74.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
74.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
73.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
73.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
73.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
73.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
72.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
72.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
72.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
72.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
72.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
72.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
72.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
71.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
71.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
71.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
70.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
70.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
70.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
70.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
69.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
69.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
68.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
68.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
68.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
67.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
67.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
67.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
67.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
67.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
66.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
66.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
66.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
66.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
66.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
65.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
65.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
65.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
65.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
64.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
63.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
63.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
63.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
62.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
62.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
62.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
62.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
62.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
62.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
62.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
62.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
61.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
60.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
60.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
59.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
59.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
58.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
58.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
58.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
57.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
57.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
57.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
57.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
57.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
57.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
56.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
55.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
54.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
54.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
54.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
53.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
53.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
52.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
52.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
51.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
51.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
50.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
49.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
49.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
48.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
48.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
47.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
46.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
46.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
46.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
46.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
44.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
44.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
42.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
42.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
42.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
41.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
37.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
37.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
28.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
28.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAMP5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
59.5
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
381.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
187.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
183.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
159.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
153.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
148.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
135.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
131.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
130.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
129.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
119.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
118.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
117.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
114.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
112.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
111.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
110.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
109.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
109.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
108.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
107.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
106.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
105.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
102.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
102.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
101.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
99.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
96.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
96.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
94.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
94.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
93.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
90.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
89.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
86.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
86.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
85.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
85.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
84.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
83.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
82.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
81.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
81.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
81.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
81.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
81.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
80.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
79.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
79.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
78.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
78.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
78.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
78.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
77.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
77.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
75.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
75.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
74.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
74.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
72.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
72.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
71.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
71.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
70.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
68.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
68.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
68.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
67.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
67.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
67.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
66.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
66.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
66.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
66.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
65.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
65.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
65.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
64.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
64.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
64.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
63.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
63.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
63.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
63.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
62.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
62.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
61.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
61.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
61.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
61.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
61.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
61.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
60.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
60.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
60.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
60.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
60.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
59.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
59.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
57.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
56.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
56.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
56.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
56.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
56.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
55.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
55.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
54.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
53.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
53.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
53.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
53.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
53.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
51.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
51.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
50.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
50.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
49.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
49.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
48.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
48.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
48.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
48.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
48.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
47.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
47.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
46.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
46.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
46.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
46.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
46.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
45.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
45.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
45.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
44.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
44.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
43.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
41.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
40.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
40.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
40.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
40.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
39.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
39.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
39.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
38.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
38.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
36.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
35.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
35.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
35.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
35.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
34.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
34.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
34.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
34.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
33.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
32.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
30.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
30.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
861
Tumor
1.3
477
Tumor
1.1
724
Normal
1.1
635
Tumor
1.1
553
Tumor
1.0
966
Normal
0.9
524
Normal
0.9
498
Normal
0.9
535
Tumor
0.8
661
Tumor
0.8
925
Tumor
0.8
492
Normal
0.8
915
Tumor
0.8
954
Normal
0.8
538
Normal
0.8
536
Normal
0.7
533
Tumor
0.7
978
Normal
0.7
471
Tumor
0.6
211
Tumor
0.6
685
Tumor
0.6
785
Tumor
0.6
262
Normal
0.6
921
Tumor
0.6
914
Normal
0.5
983
Tumor
0.5
478
Normal
0.5
963
Tumor
0.5
744
Normal
0.5
1044
Normal
0.5
1028
Normal
0.5
697
Tumor
0.5
698
Normal
0.5
443
Tumor
0.5
493
Tumor
0.5
268
Normal
0.5
937
Tumor
0.5
528
Normal
0.4
217
Tumor
0.4
715
Tumor
0.4
367
Tumor
0.4
727
Tumor
0.4
518
Normal
0.4
755
Tumor
0.4
922
Normal
0.4
363
Tumor
0.4
383
Tumor
0.4
526
Normal
0.4
212
Normal
0.4
514
Normal
0.4
952
Normal
0.4
975
Tumor
0.4
1015
Tumor
0.4
513
Tumor
0.4
778
Normal
0.4
451
Tumor
0.4
213
Tumor
0.3
686
Normal
0.3
434
Normal
0.3
468
Normal
0.3
474
Normal
0.3
261
Tumor
0.3
926
Normal
0.3
473
Tumor
0.3
728
Normal
0.3
1026
Normal
0.3
977
Tumor
0.3
554
Normal
0.3
494
Normal
0.3
943
Tumor
0.3
516
Normal
0.3
368
Normal
0.3
448
Normal
0.3
956
Normal
0.3
415
Tumor
0.3
341
Tumor
0.3
984
Normal
0.3
867
Tumor
0.3
878
Normal
0.3
917
Tumor
0.3
1031
Tumor
0.2
231
Tumor
0.2
881
Tumor
0.2
918
Normal
0.2
344
Normal
0.2
814
Normal
0.2
1042
Normal
0.2
866
Normal
0.2
696
Normal
0.2
327
Tumor
0.2
955
Tumor
0.2
425
Tumor
0.2
858
Normal
0.2
221
Tumor
0.2
124
Normal
0.2
1045
Tumor
0.2
488
Normal
0.2
467
Tumor
0.2
916
Normal
0.2
534
Normal
0.2
924
Normal
0.2
232
Normal
0.2
185
Tumor
0.2
352
Normal
0.2
286
Normal
0.2
737
Tumor
0.2
328
Normal
0.2
412
Normal
0.2
188
Normal
0.2
482
Normal
0.2
396
Normal
0.2
738
Normal
0.2
481
Tumor
0.2
864
Normal
0.2
546
Normal
0.2
944
Normal
0.2
976
Normal
0.1
1043
Tumor
0.1
723
Tumor
0.1
272
Normal
0.1
672
Normal
0.1
1027
Tumor
0.1
484
Normal
0.1
387
Tumor
0.1
413
Tumor
0.1
472
Normal
0.1
487
Tumor
0.1
343
Tumor
0.1
195
Tumor
0.1
432
Normal
0.1
447
Tumor
0.1
617
Tumor
0.1
267
Tumor
0.1
982
Normal
0.1
938
Normal
0.1
146
Normal
0.1
852
Normal
0.1
525
Tumor
0.1
456
Normal
0.1
452
Normal
0.1
218
Normal
0.1
923
Tumor
0.1
981
Tumor
0.1
258
Normal
0.1
113
Tumor
0.1
414
Normal
0.1
857
Tumor
0.1
138
Normal
0.0
1046
Normal
0.0
642
Normal
0.0
911
Tumor
0.0
483
Tumor
0.0
463
Tumor
0.0
1014
Normal
0.0
464
Normal
0.0
462
Normal
0.0
1016
Normal
0.0
284
Normal
0.0
745
Tumor
0.0
824
Normal
0.0
466
Normal
0.0
364
Normal
0.0
695
Tumor
0.0
1025
Tumor
0.0
362
Normal
0.0
818
Normal
0.0
416
Normal
0.0
968
Normal
0.0
428
Normal
0.0
913
Tumor
0.0
455
Tumor
0.0
356
Normal
0.0
386
Normal
0.0
527
Tumor
0.0
874
Normal
0.0
171
Tumor
0.0
461
Tumor
0.0
883
Tumor
0.0
142
Normal
0.0
515
Tumor
0.0
311
Tumor
0.0
271
Tumor
0.0
636
Normal
0.0
742
Normal
0.0
446
Normal
-0.1
873
Tumor
-0.1
228
Normal
-0.1
444
Normal
-0.1
868
Normal
-0.1
392
Normal
-0.1
192
Normal
-0.1
126
Normal
-0.1
648
Normal
-0.1
366
Normal
-0.1
136
Normal
-0.1
114
Normal
-0.1
862
Normal
-0.1
664
Normal
-0.1
714
Normal
-0.1
491
Tumor
-0.1
227
Tumor
-0.1
422
Normal
-0.1
967
Tumor
-0.1
746
Normal
-0.1
813
Tumor
-0.1
964
Normal
-0.1
355
Tumor
-0.1
628
Normal
-0.1
426
Normal
-0.1
958
Normal
-0.1
816
Normal
-0.1
111
Normal
-0.1
376
Normal
-0.1
618
Normal
-0.1
135
Tumor
-0.1
666
Normal
-0.1
137
Tumor
-0.1
421
Tumor
-0.1
662
Normal
-0.1
354
Normal
-0.1
523
Tumor
-0.1
823
Tumor
-0.1
647
Tumor
-0.2
563
Tumor
-0.2
278
Normal
-0.2
465
Tumor
-0.2
298
Normal
-0.2
557
Tumor
-0.2
384
Normal
-0.2
365
Tumor
-0.2
665
Tumor
-0.2
342
Normal
-0.2
741
Tumor
-0.2
214
Normal
-0.2
353
Tumor
-0.2
424
Normal
-0.2
1013
Tumor
-0.2
358
Normal
-0.2
641
Tumor
-0.2
1032
Normal
-0.2
162
Normal
-0.2
132
Normal
-0.2
224
Normal
-0.2
312
Normal
-0.2
1041
Tumor
-0.2
332
Normal
-0.2
1022
Normal
-0.2
627
Tumor
-0.2
537
Tumor
-0.2
187
Tumor
-0.2
436
Normal
-0.3
391
Tumor
-0.3
965
Tumor
-0.3
385
Tumor
-0.3
756
Normal
-0.3
172
Normal
-0.3
445
Tumor
-0.3
615
Tumor
-0.3
394
Normal
-0.3
297
Tumor
-0.3
196
Normal
-0.3
161
Tumor
-0.3
882
Normal
-0.3
716
Normal
-0.3
423
Tumor
-0.3
148
Normal
-0.3
574
Normal
-0.3
141
Tumor
-0.3
815
Tumor
-0.3
517
Tumor
-0.3
817
Tumor
-0.3
186
Normal
-0.3
545
Tumor
-0.4
877
Tumor
-0.4
127
Tumor
-0.4
112
Tumor
-0.4
713
Tumor
-0.4
1021
Tumor
-0.4
222
Normal
-0.4
951
Tumor
-0.4
191
Tumor
-0.4
722
Normal
-0.4
497
Tumor
-0.4
786
Normal
-0.4
411
Tumor
-0.4
568
Normal
-0.4
388
Normal
-0.4
558
Normal
-0.4
314
Normal
-0.4
567
Tumor
-0.4
564
Normal
-0.5
128
Normal
-0.5
851
Tumor
-0.5
433
Tumor
-0.5
123
Tumor
-0.5
361
Tumor
-0.5
616
Normal
-0.5
357
Tumor
-0.5
572
Normal
-0.5
125
Tumor
-0.5
283
Tumor
-0.5
435
Tumor
-0.6
957
Tumor
-0.6
431
Tumor
-0.6
427
Tumor
-0.6
721
Tumor
-0.6
145
Tumor
-0.6
223
Tumor
-0.6
285
Tumor
-0.6
277
Tumor
-0.6
777
Tumor
-0.6
863
Tumor
-0.7
743
Tumor
-0.7
865
Tumor
-0.7
671
Tumor
-0.7
257
Tumor
-0.7
147
Tumor
-0.7
571
Tumor
-0.7
953
Tumor
-0.8
573
Tumor
-0.8
331
Tumor
-0.8
131
Tumor
-0.9
393
Tumor
-0.9
884
Normal
-1.0
395
Tumor
-1.0
375
Tumor
-1.0
313
Tumor
-1.1
663
Tumor
-1.1
351
Tumor
-1.2
912
Normal
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
