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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GSTM4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
329.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
142.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
132.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
127.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
119.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
108.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
107.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
102.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
100.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
97.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
87.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
85.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
78.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
78.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
76.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
75.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
74.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
70.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
68.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
68.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
68.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
67.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
67.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
65.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
63.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
63.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
63.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
63.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
60.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
60.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
60.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
57.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
57.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
55.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
55.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
55.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
55.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
55.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
54.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
54.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
53.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
51.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
50.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
50.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
50.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
49.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
49.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
49.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
49.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
48.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
48.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
48.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
47.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
47.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
47.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
45.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
45.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
44.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
44.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
44.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
43.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
43.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
43.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
42.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
42.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
42.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
42.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
40.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
40.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
40.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
40.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
39.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
39.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
38.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
36.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
33.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
33.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
32.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
32.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
32.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
29.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
27.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
25.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
24.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GSTM4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.3
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
160.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
119.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
79.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
72.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
72.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
72.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
66.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
64.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
58.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
56.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
51.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
49.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
46.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
42.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
40.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
39.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
39.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
39.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
39.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
38.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
34.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
33.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
31.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
31.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
29.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
29.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
28.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
24.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
741
Tumor
3.6
915
Tumor
3.5
746
Normal
2.5
356
Normal
2.3
394
Normal
2.3
261
Tumor
2.2
627
Tumor
2.0
615
Tumor
2.0
451
Tumor
2.0
861
Tumor
2.0
916
Normal
1.9
1022
Normal
1.9
858
Normal
1.9
111
Normal
1.9
462
Normal
1.9
862
Normal
1.9
426
Normal
1.9
867
Tumor
1.8
742
Normal
1.7
628
Normal
1.7
777
Tumor
1.7
368
Normal
1.7
664
Normal
1.6
172
Normal
1.6
546
Normal
1.6
882
Normal
1.6
452
Normal
1.6
534
Normal
1.5
723
Tumor
1.5
513
Tumor
1.5
952
Normal
1.5
618
Normal
1.4
964
Normal
1.4
212
Normal
1.4
716
Normal
1.4
488
Normal
1.4
365
Tumor
1.3
515
Tumor
1.3
366
Normal
1.3
1046
Normal
1.3
466
Normal
1.3
432
Normal
1.3
954
Normal
1.3
218
Normal
1.3
396
Normal
1.3
416
Normal
1.3
953
Tumor
1.2
456
Normal
1.2
696
Normal
1.2
518
Normal
1.2
114
Normal
1.2
1014
Normal
1.2
514
Normal
1.2
138
Normal
1.2
756
Normal
1.2
362
Normal
1.1
616
Normal
1.1
388
Normal
1.1
352
Normal
1.1
186
Normal
1.1
386
Normal
1.1
574
Normal
1.0
171
Tumor
1.0
868
Normal
1.0
146
Normal
1.0
744
Normal
1.0
494
Normal
0.9
214
Normal
0.9
487
Tumor
0.9
262
Normal
0.8
976
Normal
0.8
857
Tumor
0.8
126
Normal
0.8
446
Normal
0.8
516
Normal
0.8
148
Normal
0.8
778
Normal
0.8
498
Normal
0.7
554
Normal
0.7
284
Normal
0.6
461
Tumor
0.5
361
Tumor
0.5
137
Tumor
0.5
984
Normal
0.5
267
Tumor
0.4
755
Tumor
0.4
1045
Tumor
0.4
465
Tumor
0.4
415
Tumor
0.4
268
Normal
0.3
715
Tumor
0.3
434
Normal
0.3
393
Tumor
0.3
663
Tumor
0.2
384
Normal
0.1
478
Normal
0.1
145
Tumor
0.1
672
Normal
0.1
445
Tumor
0.1
224
Normal
0.0
217
Tumor
0.0
125
Tumor
0.0
444
Normal
0.0
147
Tumor
-0.1
553
Tumor
-0.1
745
Tumor
-0.1
355
Tumor
-0.2
185
Tumor
-0.4
433
Tumor
-0.4
431
Tumor
-0.5
493
Tumor
-0.5
814
Normal
-0.5
367
Tumor
-0.6
477
Tumor
-0.6
536
Normal
-0.6
517
Tumor
-0.7
387
Tumor
-0.8
813
Tumor
-0.8
1013
Tumor
-0.8
1021
Tumor
-0.9
617
Tumor
-0.9
283
Tumor
-0.9
533
Tumor
-0.9
918
Normal
-1.0
383
Tumor
-1.0
863
Tumor
-1.1
425
Tumor
-1.1
642
Normal
-1.1
738
Normal
-1.1
443
Tumor
-1.1
636
Normal
-1.1
392
Normal
-1.1
258
Normal
-1.2
917
Tumor
-1.2
385
Tumor
-1.2
497
Tumor
-1.2
924
Normal
-1.2
376
Normal
-1.2
211
Tumor
-1.3
926
Normal
-1.3
881
Tumor
-1.4
724
Normal
-1.4
922
Normal
-1.4
213
Tumor
-1.4
695
Tumor
-1.4
391
Tumor
-1.4
232
Normal
-1.4
223
Tumor
-1.5
728
Normal
-1.5
975
Tumor
-1.5
395
Tumor
-1.5
112
Tumor
-1.5
573
Tumor
-1.6
864
Normal
-1.6
866
Normal
-1.6
257
Tumor
-1.6
526
Normal
-1.6
468
Normal
-1.6
412
Normal
-1.6
464
Normal
-1.6
162
Normal
-1.6
524
Normal
-1.6
364
Normal
-1.7
743
Tumor
-1.7
455
Tumor
-1.7
925
Tumor
-1.7
635
Tumor
-1.7
737
Tumor
-1.7
328
Normal
-1.7
786
Normal
-1.7
944
Normal
-1.7
128
Normal
-1.7
136
Normal
-1.7
951
Tumor
-1.7
272
Normal
-1.7
921
Tumor
-1.8
286
Normal
-1.8
375
Tumor
-1.8
852
Normal
-1.8
535
Tumor
-1.8
231
Tumor
-1.8
923
Tumor
-1.8
785
Tumor
-1.8
472
Normal
-1.9
525
Tumor
-1.9
641
Tumor
-1.9
873
Tumor
-1.9
474
Normal
-1.9
523
Tumor
-1.9
228
Normal
-1.9
874
Normal
-1.9
982
Normal
-1.9
113
Tumor
-1.9
436
Normal
-2.0
192
Normal
-2.0
528
Normal
-2.0
132
Normal
-2.0
484
Normal
-2.0
463
Tumor
-2.0
124
Normal
-2.0
938
Normal
-2.0
127
Tumor
-2.0
983
Tumor
-2.0
545
Tumor
-2.0
411
Tumor
-2.0
482
Normal
-2.0
327
Tumor
-2.0
481
Tumor
-2.1
963
Tumor
-2.1
363
Tumor
-2.1
188
Normal
-2.1
285
Tumor
-2.2
727
Tumor
-2.2
467
Tumor
-2.2
491
Tumor
-2.2
666
Normal
-2.2
271
Tumor
-2.2
492
Normal
-2.2
662
Normal
-2.2
424
Normal
-2.3
142
Normal
-2.3
958
Normal
-2.3
865
Tumor
-2.3
344
Normal
-2.3
538
Normal
-2.3
161
Tumor
-2.3
1016
Normal
-2.3
878
Normal
-2.3
342
Normal
-2.3
222
Normal
-2.3
884
Normal
-2.4
196
Normal
-2.4
123
Tumor
-2.4
714
Normal
-2.4
698
Normal
-2.4
435
Tumor
-2.4
818
Normal
-2.5
227
Tumor
-2.5
483
Tumor
-2.5
877
Tumor
-2.5
937
Tumor
-2.5
473
Tumor
-2.5
978
Normal
-2.5
187
Tumor
-2.5
354
Normal
-2.5
141
Tumor
-2.5
527
Tumor
-2.5
851
Tumor
-2.5
135
Tumor
-2.6
537
Tumor
-2.6
351
Tumor
-2.6
471
Tumor
-2.6
981
Tumor
-2.6
816
Normal
-2.6
956
Normal
-2.6
1044
Normal
-2.7
358
Normal
-2.7
671
Tumor
-2.7
912
Normal
-2.7
686
Normal
-2.7
824
Normal
-2.7
943
Tumor
-2.7
911
Tumor
-2.7
721
Tumor
-2.8
966
Normal
-2.8
131
Tumor
-2.8
955
Tumor
-2.8
914
Normal
-2.8
648
Normal
-2.8
968
Normal
-2.8
572
Normal
-2.8
1015
Tumor
-2.8
448
Normal
-2.8
422
Normal
-2.8
191
Tumor
-2.8
823
Tumor
-2.8
713
Tumor
-2.9
414
Normal
-2.9
195
Tumor
-2.9
722
Normal
-2.9
1025
Tumor
-2.9
1032
Normal
-2.9
1042
Normal
-2.9
221
Tumor
-3.0
428
Normal
-3.0
423
Tumor
-3.0
427
Tumor
-3.0
1026
Normal
-3.0
913
Tumor
-3.0
665
Tumor
-3.0
353
Tumor
-3.0
1041
Tumor
-3.0
883
Tumor
-3.0
1027
Tumor
-3.1
341
Tumor
-3.1
343
Tumor
-3.1
447
Tumor
-3.1
697
Tumor
-3.1
571
Tumor
-3.1
1043
Tumor
-3.1
1028
Normal
-3.1
1031
Tumor
-3.2
421
Tumor
-3.2
817
Tumor
-3.2
685
Tumor
-3.2
815
Tumor
-3.2
647
Tumor
-3.3
568
Normal
-3.3
967
Tumor
-3.3
977
Tumor
-3.3
413
Tumor
-3.3
357
Tumor
-3.3
563
Tumor
-3.3
564
Normal
-3.4
957
Tumor
-3.5
311
Tumor
-3.6
558
Normal
-3.6
965
Tumor
-3.6
661
Tumor
-3.6
298
Normal
-3.6
278
Normal
-3.7
312
Normal
-3.8
314
Normal
-3.8
331
Tumor
-3.8
332
Normal
-3.8
567
Tumor
-3.9
557
Tumor
-4.0
297
Tumor
-4.3
277
Tumor
-4.3
313
Tumor
-4.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
