MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.5 nTPM
HPA Brain:12.9 nTPM
GTEx:11.5 nTPM
FANTOM5:12.5 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:3.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 12.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.2
2586 Male, age 75, left hemisphere 10.7
1827 Male, age 72, unknown 10.6
1870 Female, age 42, unknown 10.4
2666 Male, age 74, left hemisphere 9.7
2828 Female, age 72, unknown 9.3
1833 Male, age 53, unknown 9.2
1830 Male, age 51, unknown 9.1
2219 Male, age 76, both hemispheres 8.7
2019 Male, age 18, unknown 7.5
2411 Female, age 72, unknown 7.3
Dorsal raphe nucleus
nTPM: 9.8
2016 Female, age 72, unknown 10.5
1828 Male, age 53, unknown 10.1
2298 Female, age 72, unknown 9.8
2750 Male, age 76, both hemispheres 9.6
2047 Male, age 72, unknown 8.9
Inferior colliculus
nTPM: 11.3
2849 Male, age 72, unknown 12.7
1890 Male, age 53, unknown 11.2
2097 Female, age 72, unknown 11.1
1848 Female, age 42, unknown 10.2
Median raphe nucleus
nTPM: 12.7
2220 Male, age 76, midline 12.7
Periaquaductal grey, anterior
nTPM: 8.7
2502 Female, age 75, unknown 9.3
1795 Male, age 51, unknown 8.8
1947 Male, age 18, unknown 8.1
Periaquaductal grey, dorsal
nTPM: 12.9
2850 Male, age 76, both hemispheres 20.5
1840 Male, age 53, unknown 12.6
1831 Male, age 72, unknown 9.9
2464 Female, age 72, unknown 8.5
Periaquaductal grey, lateral
nTPM: 12.5
2140 Male, age 76, both hemispheres 19.1
2272 Male, age 74, both hemispheres 9.2
2053 Male, age 18, unknown 9.0
Pretectal area
nTPM: 9.3
1817 Female, age 42, unknown 11.6
2825 Male, age 18, unknown 11.5
2007 Male, age 72, unknown 10.6
2224 Female, age 72, unknown 9.8
1944 Female, age 72, unknown 9.6
2667 Female, age 75, unknown 9.6
2273 Male, age 74, both hemispheres 8.3
1815 Male, age 53, unknown 8.0
1816 Male, age 51, unknown 8.0
2407 Male, age 75, both hemispheres 7.9
2316 Male, age 76, right hemisphere 7.8
Red nucleus
nTPM: 9.7
2725 Female, age 75, unknown 12.2
2588 Male, age 74, left hemisphere 11.6
1865 Male, age 51, unknown 10.3
2769 Male, age 72, unknown 10.3
2503 Female, age 72, unknown 9.8
1954 Female, age 42, unknown 9.4
2227 Male, age 72, unknown 9.4
2785 Male, age 18, unknown 9.2
1904 Male, age 53, unknown 8.9
2584 Male, age 75, left hemisphere 8.3
2823 Male, age 76, right hemisphere 8.3
1821 Female, age 72, unknown 8.2
Substantia nigra
nTPM: 8.8
2699 Male, age 18, unknown 11.8
1916 Female, age 42, unknown 11.2
1941 Male, age 53, unknown 10.3
1889 Female, age 72, unknown 9.5
2665 Male, age 74, both hemispheres 9.1
2241 Male, age 72, unknown 8.8
1851 Male, age 51, unknown 8.7
2583 Male, age 75, right hemisphere 7.8
2590 Female, age 75, unknown 6.3
2409 Female, age 72, unknown 4.5
Superior colliculus
nTPM: 8.6
1895 Male, age 76, right hemisphere 10.4
2664 Male, age 75, both hemispheres 9.9
2587 Male, age 74, left hemisphere 9.2
1796 Male, age 53, unknown 9.0
1839 Male, age 51, unknown 9.0
2261 Male, age 18, unknown 8.9
2668 Female, age 75, unknown 8.1
1913 Female, age 42, unknown 7.6
2087 Female, age 72, unknown 7.2
1995 Male, age 72, unknown 7.1
Ventral tegmental area
nTPM: 9.7
2223 Female, age 72, unknown 11.1
2218 Male, age 76, both hemispheres 10.7
1942 Male, age 51, unknown 9.7
2021 Male, age 53, unknown 9.1
1915 Female, age 42, unknown 9.0
2410 Female, age 72, unknown 8.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.5
Samples: 139

Max nTPM: 28.6
Min nTPM: 5.4
Std nTPM: 3.4
Median nTPM: 11.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 28.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 21.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 21.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 18.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 18.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.6
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 18.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 18.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 17.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 17.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 17.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.5
FF:10158-103A5 76 years, female 12.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.8
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.7
Sample A Female 9.1
Sample B Female 7.7
Sample C Male 9.8
Sample D Male 8.5
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 10.2
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 9.5
Sample C Male 10.2
Sample D Male 10.0
Periaqueductal gray
nTPM: 11.2
Samples: 3

Max nTPM: 12.2
Min nTPM: 10.4
Sample B Female 10.4
Sample C Male 12.2
Sample D Male 10.9
Superior colliculi
nTPM: 10.1
Samples: 4

Max nTPM: 11.0
Min nTPM: 8.8
Sample A Female 11.0
Sample B Female 8.8
Sample C Male 10.2
Sample D Male 10.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.7
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.0
Sample A Male 4.5
Sample B Male 3.8
Sample C Female 3.0
Sample D Female 3.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69289201 Antisense, RP_050407_02_G03, Mouse strain C57BL/6J (56 days, male) 0.2

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