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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
526.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
343.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
232.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
199.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
138.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
131.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
128.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
125.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
123.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
113.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
107.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
105.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
98.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
97.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
97.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
94.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
93.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
91.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
86.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
83.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
83.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
80.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
75.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
73.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
72.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
70.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
69.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
69.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
69.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
69.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
68.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
66.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
65.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
64.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
61.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
60.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
58.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
58.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
58.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
57.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
57.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
57.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
55.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
52.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
52.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
51.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
50.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
50.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
49.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
49.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
48.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
47.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
47.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
46.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
45.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
45.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
45.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
45.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
45.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
45.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
44.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
44.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
44.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
44.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
43.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
43.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
43.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
41.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
41.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
41.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
40.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
40.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
40.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
39.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
39.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
38.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
38.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
36.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
36.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
36.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
36.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
35.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
35.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
35.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
34.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
32.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
32.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
31.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
31.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
30.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
30.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
29.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
28.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
28.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.3
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
360.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
316.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
272.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
162.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
162.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
134.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
133.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
129.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
116.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
108.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
104.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
94.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
91.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
88.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
84.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
83.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
82.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
82.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
80.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
80.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
77.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
75.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
72.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
66.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
64.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
63.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
63.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
62.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
61.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
59.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
59.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
59.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
58.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
58.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
57.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
57.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
56.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
55.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
53.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
53.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
52.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
52.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
51.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
50.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
49.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
49.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
48.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
48.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
48.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
47.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
47.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
47.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
47.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
46.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
45.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
44.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
43.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
42.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
42.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
41.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
41.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
41.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
40.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
40.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
40.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
40.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
39.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
38.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
38.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
37.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
37.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
36.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
35.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
34.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
34.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
31.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
31.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
29.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
28.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
27.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
724
Normal
1.9
917
Tumor
1.6
1031
Tumor
1.5
213
Tumor
1.5
661
Tumor
1.5
1015
Tumor
1.4
557
Tumor
1.3
467
Tumor
1.3
861
Tumor
1.2
311
Tumor
1.1
434
Normal
1.1
113
Tumor
1.1
1043
Tumor
1.1
211
Tumor
1.0
217
Tumor
1.0
383
Tumor
1.0
188
Normal
0.9
262
Normal
0.9
385
Tumor
0.9
685
Tumor
0.8
966
Normal
0.7
977
Tumor
0.7
978
Normal
0.7
823
Tumor
0.7
451
Tumor
0.7
663
Tumor
0.7
343
Tumor
0.7
375
Tumor
0.6
491
Tumor
0.6
755
Tumor
0.6
814
Normal
0.6
277
Tumor
0.6
327
Tumor
0.6
915
Tumor
0.5
914
Normal
0.5
362
Normal
0.5
125
Tumor
0.5
126
Normal
0.5
721
Tumor
0.5
135
Tumor
0.5
535
Tumor
0.4
387
Tumor
0.4
191
Tumor
0.4
384
Normal
0.4
524
Normal
0.4
395
Tumor
0.4
455
Tumor
0.4
366
Normal
0.4
261
Tumor
0.4
468
Normal
0.4
573
Tumor
0.4
857
Tumor
0.3
195
Tumor
0.3
127
Tumor
0.3
147
Tumor
0.3
883
Tumor
0.3
536
Normal
0.3
355
Tumor
0.3
937
Tumor
0.3
1027
Tumor
0.3
386
Normal
0.3
161
Tumor
0.2
686
Normal
0.2
916
Normal
0.2
913
Tumor
0.2
283
Tumor
0.2
493
Tumor
0.2
185
Tumor
0.2
867
Tumor
0.2
368
Normal
0.2
492
Normal
0.2
192
Normal
0.2
456
Normal
0.2
267
Tumor
0.2
427
Tumor
0.2
212
Normal
0.2
141
Tumor
0.2
313
Tumor
0.2
268
Normal
0.2
432
Normal
0.2
963
Tumor
0.2
187
Tumor
0.1
662
Normal
0.1
514
Normal
0.1
231
Tumor
0.1
953
Tumor
0.1
553
Tumor
0.1
224
Normal
0.1
396
Normal
0.1
284
Normal
0.1
353
Tumor
0.1
227
Tumor
0.1
258
Normal
0.1
533
Tumor
0.1
523
Tumor
0.1
365
Tumor
0.1
146
Normal
0.1
391
Tumor
0.1
172
Normal
0.1
272
Normal
0.1
218
Normal
0.1
114
Normal
0.1
425
Tumor
0.1
221
Tumor
0.1
497
Tumor
0.0
745
Tumor
0.0
358
Normal
0.0
957
Tumor
0.0
516
Normal
0.0
413
Tumor
0.0
452
Normal
0.0
138
Normal
0.0
865
Tumor
0.0
124
Normal
0.0
361
Tumor
0.0
367
Tumor
0.0
123
Tumor
0.0
785
Tumor
0.0
433
Tumor
0.0
478
Normal
0.0
628
Normal
0.0
943
Tumor
0.0
388
Normal
0.0
975
Tumor
0.0
136
Normal
0.0
487
Tumor
0.0
1044
Normal
0.0
444
Normal
0.0
421
Tumor
0.0
332
Normal
0.0
666
Normal
0.0
851
Tumor
0.0
498
Normal
0.0
352
Normal
0.0
357
Tumor
-0.1
1013
Tumor
-0.1
955
Tumor
-0.1
922
Normal
-0.1
145
Tumor
-0.1
852
Normal
-0.1
426
Normal
-0.1
1041
Tumor
-0.1
956
Normal
-0.1
574
Normal
-0.1
525
Tumor
-0.1
558
Normal
-0.1
228
Normal
-0.1
513
Tumor
-0.1
954
Normal
-0.1
447
Tumor
-0.1
394
Normal
-0.1
232
Normal
-0.1
214
Normal
-0.1
162
Normal
-0.1
926
Normal
-0.1
111
Normal
-0.1
137
Tumor
-0.1
951
Tumor
-0.1
526
Normal
-0.1
494
Normal
-0.1
132
Normal
-0.1
422
Normal
-0.1
142
Normal
-0.1
312
Normal
-0.1
1042
Normal
-0.1
641
Tumor
-0.1
376
Normal
-0.1
716
Normal
-0.1
664
Normal
-0.1
918
Normal
-0.1
471
Tumor
-0.1
128
Normal
-0.1
741
Tumor
-0.1
881
Tumor
-0.1
564
Normal
-0.1
443
Tumor
-0.1
286
Normal
-0.1
567
Tumor
-0.1
518
Normal
-0.2
392
Normal
-0.2
464
Normal
-0.2
538
Normal
-0.2
925
Tumor
-0.2
424
Normal
-0.2
257
Tumor
-0.2
148
Normal
-0.2
777
Tumor
-0.2
527
Tumor
-0.2
414
Normal
-0.2
672
Normal
-0.2
528
Normal
-0.2
446
Normal
-0.2
186
Normal
-0.2
278
Normal
-0.2
416
Normal
-0.2
423
Tumor
-0.2
415
Tumor
-0.2
466
Normal
-0.2
671
Tumor
-0.2
862
Normal
-0.2
697
Tumor
-0.2
461
Tumor
-0.2
393
Tumor
-0.2
572
Normal
-0.2
858
Normal
-0.2
463
Tumor
-0.2
1028
Normal
-0.2
554
Normal
-0.2
863
Tumor
-0.2
351
Tumor
-0.2
864
Normal
-0.2
223
Tumor
-0.2
344
Normal
-0.2
923
Tumor
-0.3
1016
Normal
-0.3
271
Tumor
-0.3
778
Normal
-0.3
448
Normal
-0.3
445
Tumor
-0.3
696
Normal
-0.3
813
Tumor
-0.3
571
Tumor
-0.3
884
Normal
-0.3
695
Tumor
-0.3
627
Tumor
-0.3
952
Normal
-0.3
546
Normal
-0.3
534
Normal
-0.3
722
Normal
-0.3
1046
Normal
-0.3
868
Normal
-0.3
976
Normal
-0.3
196
Normal
-0.3
877
Tumor
-0.3
874
Normal
-0.3
756
Normal
-0.3
341
Tumor
-0.3
786
Normal
-0.3
488
Normal
-0.3
815
Tumor
-0.3
648
Normal
-0.3
816
Normal
-0.3
222
Normal
-0.3
563
Tumor
-0.3
354
Normal
-0.3
938
Normal
-0.3
817
Tumor
-0.3
984
Normal
-0.3
713
Tumor
-0.3
314
Normal
-0.3
968
Normal
-0.4
1014
Normal
-0.4
647
Tumor
-0.4
298
Normal
-0.4
477
Tumor
-0.4
635
Tumor
-0.4
364
Normal
-0.4
698
Normal
-0.4
742
Normal
-0.4
171
Tumor
-0.4
1032
Normal
-0.4
665
Tumor
-0.4
328
Normal
-0.4
738
Normal
-0.4
436
Normal
-0.4
428
Normal
-0.4
873
Tumor
-0.4
356
Normal
-0.4
411
Tumor
-0.4
297
Tumor
-0.4
728
Normal
-0.4
342
Normal
-0.4
866
Normal
-0.4
982
Normal
-0.4
112
Tumor
-0.4
481
Tumor
-0.4
568
Normal
-0.4
824
Normal
-0.4
715
Tumor
-0.5
1021
Tumor
-0.5
958
Normal
-0.5
944
Normal
-0.5
465
Tumor
-0.5
431
Tumor
-0.5
1022
Normal
-0.5
924
Normal
-0.5
435
Tumor
-0.5
462
Normal
-0.5
983
Tumor
-0.5
615
Tumor
-0.5
545
Tumor
-0.5
412
Normal
-0.5
714
Normal
-0.5
818
Normal
-0.5
474
Normal
-0.5
537
Tumor
-0.5
616
Normal
-0.5
1026
Normal
-0.5
1025
Tumor
-0.5
882
Normal
-0.5
964
Normal
-0.5
727
Tumor
-0.5
483
Tumor
-0.5
1045
Tumor
-0.6
482
Normal
-0.6
642
Normal
-0.6
636
Normal
-0.6
967
Tumor
-0.6
515
Tumor
-0.6
723
Tumor
-0.6
744
Normal
-0.6
878
Normal
-0.6
981
Tumor
-0.6
912
Normal
-0.6
484
Normal
-0.6
617
Tumor
-0.7
472
Normal
-0.7
746
Normal
-0.7
921
Tumor
-0.7
618
Normal
-0.7
473
Tumor
-0.8
285
Tumor
-0.8
331
Tumor
-0.8
517
Tumor
-0.8
131
Tumor
-0.9
363
Tumor
-0.9
737
Tumor
-0.9
911
Tumor
-0.9
965
Tumor
-1.0
743
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
