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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NT5DC2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
299.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
259.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
238.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
213.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
152.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
127.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
102.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
102.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
98.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
97.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
85.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
82.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
80.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
75.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
73.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
73.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
69.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
63.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
59.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
59.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
57.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
51.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
50.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
49.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
47.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
45.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
42.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
42.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
41.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
39.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
39.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
39.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
39.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
38.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
38.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
36.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
32.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
30.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NT5DC2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
279.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
231.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
75.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
66.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
65.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
64.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
62.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
61.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
57.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
53.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
45.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
45.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
43.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
33.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
2.3
743
Tumor
2.2
385
Tumor
2.1
517
Tumor
1.9
671
Tumor
1.8
877
Tumor
1.8
661
Tumor
1.7
331
Tumor
1.6
815
Tumor
1.5
463
Tumor
1.4
983
Tumor
1.4
737
Tumor
1.4
923
Tumor
1.3
283
Tumor
1.3
957
Tumor
1.3
413
Tumor
1.3
523
Tumor
1.2
351
Tumor
1.2
951
Tumor
1.1
535
Tumor
1.1
943
Tumor
1.1
161
Tumor
1.1
131
Tumor
1.0
387
Tumor
1.0
367
Tumor
1.0
135
Tumor
0.9
421
Tumor
0.9
125
Tumor
0.9
447
Tumor
0.9
393
Tumor
0.8
297
Tumor
0.8
311
Tumor
0.8
127
Tumor
0.8
355
Tumor
0.8
363
Tumor
0.8
953
Tumor
0.8
112
Tumor
0.8
192
Normal
0.7
881
Tumor
0.7
227
Tumor
0.7
817
Tumor
0.7
917
Tumor
0.7
921
Tumor
0.6
713
Tumor
0.6
313
Tumor
0.6
545
Tumor
0.6
1043
Tumor
0.5
491
Tumor
0.5
567
Tumor
0.5
814
Normal
0.5
865
Tumor
0.5
641
Tumor
0.5
975
Tumor
0.5
813
Tumor
0.5
277
Tumor
0.4
187
Tumor
0.4
444
Normal
0.4
343
Tumor
0.4
455
Tumor
0.4
213
Tumor
0.4
211
Tumor
0.3
357
Tumor
0.3
483
Tumor
0.3
221
Tumor
0.3
537
Tumor
0.3
391
Tumor
0.3
715
Tumor
0.3
191
Tumor
0.3
231
Tumor
0.3
375
Tumor
0.2
332
Normal
0.2
195
Tumor
0.2
571
Tumor
0.2
697
Tumor
0.2
1031
Tumor
0.2
1025
Tumor
0.2
445
Tumor
0.2
217
Tumor
0.2
695
Tumor
0.2
647
Tumor
0.2
185
Tumor
0.2
471
Tumor
0.2
525
Tumor
0.2
411
Tumor
0.2
383
Tumor
0.1
744
Normal
0.1
467
Tumor
0.1
497
Tumor
0.1
823
Tumor
0.1
451
Tumor
0.1
435
Tumor
0.1
267
Tumor
0.1
268
Normal
0.0
354
Normal
0.0
171
Tumor
0.0
857
Tumor
0.0
222
Normal
0.0
536
Normal
0.0
443
Tumor
0.0
352
Normal
0.0
113
Tumor
0.0
312
Normal
0.0
478
Normal
0.0
663
Tumor
0.0
1041
Tumor
0.0
493
Tumor
0.0
358
Normal
0.0
563
Tumor
0.0
432
Normal
0.0
196
Normal
-0.1
672
Normal
-0.1
465
Tumor
-0.1
271
Tumor
-0.1
395
Tumor
-0.1
425
Tumor
-0.1
434
Normal
-0.1
188
Normal
-0.1
314
Normal
-0.1
386
Normal
-0.1
662
Normal
-0.1
388
Normal
-0.1
365
Tumor
-0.1
863
Tumor
-0.1
963
Tumor
-0.1
257
Tumor
-0.1
147
Tumor
-0.1
218
Normal
-0.1
724
Normal
-0.1
214
Normal
-0.1
394
Normal
-0.1
344
Normal
-0.1
272
Normal
-0.1
278
Normal
-0.1
433
Tumor
-0.2
396
Normal
-0.2
883
Tumor
-0.2
1027
Tumor
-0.2
145
Tumor
-0.2
456
Normal
-0.2
666
Normal
-0.2
785
Tumor
-0.2
286
Normal
-0.2
982
Normal
-0.2
1013
Tumor
-0.2
958
Normal
-0.2
284
Normal
-0.2
966
Normal
-0.2
223
Tumor
-0.2
262
Normal
-0.2
224
Normal
-0.2
431
Tumor
-0.2
342
Normal
-0.2
861
Tumor
-0.2
136
Normal
-0.2
468
Normal
-0.2
232
Normal
-0.2
146
Normal
-0.2
461
Tumor
-0.2
446
Normal
-0.2
464
Normal
-0.2
852
Normal
-0.2
384
Normal
-0.2
427
Tumor
-0.3
132
Normal
-0.3
978
Normal
-0.3
298
Normal
-0.3
977
Tumor
-0.3
423
Tumor
-0.3
851
Tumor
-0.3
745
Tumor
-0.3
664
Normal
-0.3
392
Normal
-0.3
984
Normal
-0.3
873
Tumor
-0.3
228
Normal
-0.3
477
Tumor
-0.3
261
Tumor
-0.3
341
Tumor
-0.3
648
Normal
-0.3
1014
Normal
-0.3
466
Normal
-0.3
516
Normal
-0.3
353
Tumor
-0.4
366
Normal
-0.4
524
Normal
-0.4
515
Tumor
-0.4
981
Tumor
-0.4
1016
Normal
-0.4
361
Tumor
-0.4
514
Normal
-0.4
436
Normal
-0.4
138
Normal
-0.4
258
Normal
-0.4
356
Normal
-0.4
141
Tumor
-0.4
528
Normal
-0.4
818
Normal
-0.4
142
Normal
-0.4
868
Normal
-0.4
538
Normal
-0.4
123
Tumor
-0.4
635
Tumor
-0.4
665
Tumor
-0.4
574
Normal
-0.4
376
Normal
-0.4
137
Tumor
-0.4
526
Normal
-0.5
723
Tumor
-0.5
126
Normal
-0.5
727
Tumor
-0.5
1046
Normal
-0.5
573
Tumor
-0.5
964
Normal
-0.5
162
Normal
-0.5
557
Tumor
-0.5
148
Normal
-0.5
212
Normal
-0.5
452
Normal
-0.5
976
Normal
-0.5
513
Tumor
-0.5
422
Normal
-0.5
186
Normal
-0.5
867
Tumor
-0.5
617
Tumor
-0.5
1044
Normal
-0.5
492
Normal
-0.5
915
Tumor
-0.5
424
Normal
-0.5
448
Normal
-0.5
172
Normal
-0.5
546
Normal
-0.5
473
Tumor
-0.5
858
Normal
-0.5
527
Tumor
-0.6
414
Normal
-0.6
494
Normal
-0.6
627
Tumor
-0.6
944
Normal
-0.6
564
Normal
-0.6
498
Normal
-0.6
1021
Tumor
-0.6
368
Normal
-0.6
111
Normal
-0.6
114
Normal
-0.6
698
Normal
-0.6
327
Tumor
-0.6
874
Normal
-0.6
428
Normal
-0.6
738
Normal
-0.6
518
Normal
-0.6
1015
Tumor
-0.6
426
Normal
-0.6
721
Tumor
-0.6
884
Normal
-0.6
864
Normal
-0.6
124
Normal
-0.6
362
Normal
-0.6
472
Normal
-0.6
1045
Tumor
-0.6
533
Tumor
-0.6
742
Normal
-0.7
553
Tumor
-0.7
924
Normal
-0.7
728
Normal
-0.7
474
Normal
-0.7
916
Normal
-0.7
534
Normal
-0.7
824
Normal
-0.7
968
Normal
-0.7
462
Normal
-0.7
912
Normal
-0.7
756
Normal
-0.7
937
Tumor
-0.7
364
Normal
-0.7
956
Normal
-0.7
777
Tumor
-0.8
482
Normal
-0.8
914
Normal
-0.8
1032
Normal
-0.8
866
Normal
-0.8
128
Normal
-0.8
816
Normal
-0.8
755
Tumor
-0.8
965
Tumor
-0.8
954
Normal
-0.8
628
Normal
-0.8
938
Normal
-0.8
878
Normal
-0.8
572
Normal
-0.8
554
Normal
-0.8
642
Normal
-0.8
882
Normal
-0.8
722
Normal
-0.8
615
Tumor
-0.8
741
Tumor
-0.8
1042
Normal
-0.8
967
Tumor
-0.8
913
Tumor
-0.8
618
Normal
-0.9
952
Normal
-0.9
481
Tumor
-0.9
636
Normal
-0.9
568
Normal
-0.9
862
Normal
-0.9
328
Normal
-0.9
487
Tumor
-0.9
415
Tumor
-0.9
786
Normal
-0.9
716
Normal
-0.9
778
Normal
-1.0
558
Normal
-1.0
616
Normal
-1.0
416
Normal
-1.0
488
Normal
-1.0
412
Normal
-1.0
746
Normal
-1.0
925
Tumor
-1.0
696
Normal
-1.1
714
Normal
-1.1
1026
Normal
-1.1
1022
Normal
-1.1
911
Tumor
-1.1
1028
Normal
-1.1
918
Normal
-1.2
484
Normal
-1.2
686
Normal
-1.2
922
Normal
-1.3
685
Tumor
-1.3
926
Normal
-1.3
955
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
