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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LMBRD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
33.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LMBRD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.2
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
105.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
98.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
86.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
65.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
62.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
61.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
60.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
58.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
57.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
53.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
52.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
51.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
50.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
49.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
47.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
47.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
47.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
46.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
45.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
45.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
45.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
44.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
43.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
43.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
42.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
42.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
41.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
41.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
41.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
40.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
39.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
39.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
38.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
37.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
37.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
37.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
36.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
36.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
36.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
36.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
36.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
36.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
35.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
35.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
35.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
33.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
33.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
33.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
32.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
31.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
29.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
28.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
617
Tumor
1.2
471
Tumor
1.2
343
Tumor
1.2
413
Tumor
1.2
663
Tumor
1.1
271
Tumor
1.1
425
Tumor
1.1
615
Tumor
1.1
697
Tumor
1.0
743
Tumor
1.0
473
Tumor
0.9
1025
Tumor
0.9
545
Tumor
0.8
943
Tumor
0.8
777
Tumor
0.8
527
Tumor
0.8
435
Tumor
0.8
313
Tumor
0.7
125
Tumor
0.7
353
Tumor
0.7
124
Normal
0.7
533
Tumor
0.7
477
Tumor
0.6
135
Tumor
0.6
755
Tumor
0.6
911
Tumor
0.6
131
Tumor
0.6
695
Tumor
0.6
737
Tumor
0.6
745
Tumor
0.5
883
Tumor
0.5
443
Tumor
0.5
878
Normal
0.5
952
Normal
0.5
746
Normal
0.5
421
Tumor
0.5
354
Normal
0.5
571
Tumor
0.5
882
Normal
0.5
647
Tumor
0.5
474
Normal
0.5
432
Normal
0.5
573
Tumor
0.5
881
Tumor
0.5
813
Tumor
0.5
461
Tumor
0.4
221
Tumor
0.4
147
Tumor
0.4
298
Normal
0.4
515
Tumor
0.4
874
Normal
0.4
824
Normal
0.4
858
Normal
0.4
713
Tumor
0.4
277
Tumor
0.4
191
Tumor
0.4
331
Tumor
0.4
445
Tumor
0.4
563
Tumor
0.4
341
Tumor
0.4
1041
Tumor
0.4
344
Normal
0.4
272
Normal
0.4
363
Tumor
0.4
975
Tumor
0.4
355
Tumor
0.3
914
Normal
0.3
951
Tumor
0.3
431
Tumor
0.3
111
Normal
0.3
342
Normal
0.3
352
Normal
0.3
446
Normal
0.3
488
Normal
0.3
427
Tumor
0.3
744
Normal
0.3
412
Normal
0.3
142
Normal
0.3
1027
Tumor
0.3
867
Tumor
0.3
297
Tumor
0.3
866
Normal
0.3
148
Normal
0.3
785
Tumor
0.3
1021
Tumor
0.3
618
Normal
0.3
823
Tumor
0.3
222
Normal
0.3
724
Normal
0.2
367
Tumor
0.2
873
Tumor
0.2
814
Normal
0.2
862
Normal
0.2
864
Normal
0.2
185
Tumor
0.2
462
Normal
0.2
436
Normal
0.2
553
Tumor
0.2
494
Normal
0.2
664
Normal
0.2
123
Tumor
0.2
954
Normal
0.2
434
Normal
0.2
491
Tumor
0.2
728
Normal
0.2
136
Normal
0.2
187
Tumor
0.2
756
Normal
0.2
616
Normal
0.2
358
Normal
0.2
661
Tumor
0.2
128
Normal
0.2
192
Normal
0.1
977
Tumor
0.1
433
Tumor
0.1
218
Normal
0.1
387
Tumor
0.1
196
Normal
0.1
444
Normal
0.1
666
Normal
0.1
312
Normal
0.1
815
Tumor
0.1
863
Tumor
0.1
127
Tumor
0.1
641
Tumor
0.1
455
Tumor
0.1
137
Tumor
0.1
364
Normal
0.1
357
Tumor
0.1
484
Normal
0.1
278
Normal
0.1
162
Normal
0.1
145
Tumor
0.1
314
Normal
0.1
963
Tumor
0.1
267
Tumor
0.1
261
Tumor
0.1
913
Tumor
0.1
738
Normal
0.1
662
Normal
0.1
161
Tumor
0.1
672
Normal
0.1
786
Normal
0.1
114
Normal
0.1
1014
Normal
0.1
964
Normal
0.0
422
Normal
0.0
642
Normal
0.0
665
Tumor
0.0
968
Normal
0.0
648
Normal
0.0
214
Normal
0.0
976
Normal
0.0
537
Tumor
0.0
415
Tumor
0.0
983
Tumor
0.0
361
Tumor
0.0
262
Normal
0.0
395
Tumor
0.0
817
Tumor
0.0
723
Tumor
0.0
742
Normal
0.0
423
Tumor
0.0
523
Tumor
0.0
365
Tumor
0.0
497
Tumor
0.0
921
Tumor
0.0
376
Normal
0.0
1043
Tumor
0.0
172
Normal
0.0
217
Tumor
0.0
171
Tumor
0.0
818
Normal
0.0
126
Normal
0.0
132
Normal
0.0
912
Normal
0.0
195
Tumor
0.0
926
Normal
0.0
635
Tumor
0.0
534
Normal
0.0
1022
Normal
0.0
816
Normal
-0.1
727
Tumor
-0.1
146
Normal
-0.1
351
Tumor
-0.1
483
Tumor
-0.1
922
Normal
-0.1
366
Normal
-0.1
572
Normal
-0.1
1031
Tumor
-0.1
464
Normal
-0.1
258
Normal
-0.1
268
Normal
-0.1
186
Normal
-0.1
356
Normal
-0.1
482
Normal
-0.1
1013
Tumor
-0.1
428
Normal
-0.1
528
Normal
-0.1
698
Normal
-0.1
955
Tumor
-0.1
546
Normal
-0.1
868
Normal
-0.1
426
Normal
-0.1
564
Normal
-0.1
384
Normal
-0.1
141
Tumor
-0.1
741
Tumor
-0.1
938
Normal
-0.1
925
Tumor
-0.1
424
Normal
-0.1
722
Normal
-0.1
362
Normal
-0.1
487
Tumor
-0.1
778
Normal
-0.1
188
Normal
-0.1
383
Tumor
-0.1
554
Normal
-0.1
411
Tumor
-0.1
492
Normal
-0.1
328
Normal
-0.1
918
Normal
-0.1
332
Normal
-0.1
721
Tumor
-0.1
388
Normal
-0.2
232
Normal
-0.2
877
Tumor
-0.2
966
Normal
-0.2
686
Normal
-0.2
861
Tumor
-0.2
396
Normal
-0.2
112
Tumor
-0.2
1045
Tumor
-0.2
956
Normal
-0.2
967
Tumor
-0.2
685
Tumor
-0.2
472
Normal
-0.2
517
Tumor
-0.2
463
Tumor
-0.2
498
Normal
-0.2
852
Normal
-0.2
636
Normal
-0.2
1015
Tumor
-0.2
448
Normal
-0.2
451
Tumor
-0.2
386
Normal
-0.2
924
Normal
-0.2
1042
Normal
-0.2
696
Normal
-0.2
518
Normal
-0.2
392
Normal
-0.2
923
Tumor
-0.2
414
Normal
-0.2
884
Normal
-0.2
1016
Normal
-0.3
138
Normal
-0.3
1046
Normal
-0.3
538
Normal
-0.3
394
Normal
-0.3
851
Tumor
-0.3
1028
Normal
-0.3
937
Tumor
-0.3
456
Normal
-0.3
526
Normal
-0.3
516
Normal
-0.3
452
Normal
-0.3
558
Normal
-0.3
368
Normal
-0.3
478
Normal
-0.4
628
Normal
-0.4
671
Tumor
-0.4
574
Normal
-0.4
311
Tumor
-0.4
535
Tumor
-0.4
213
Tumor
-0.4
984
Normal
-0.4
257
Tumor
-0.4
385
Tumor
-0.4
865
Tumor
-0.4
391
Tumor
-0.4
524
Normal
-0.4
568
Normal
-0.4
958
Normal
-0.4
627
Tumor
-0.4
536
Normal
-0.4
715
Tumor
-0.4
916
Normal
-0.4
957
Tumor
-0.4
416
Normal
-0.4
1044
Normal
-0.4
857
Tumor
-0.4
525
Tumor
-0.4
447
Tumor
-0.5
716
Normal
-0.5
714
Normal
-0.5
567
Tumor
-0.5
1026
Normal
-0.5
978
Normal
-0.5
944
Normal
-0.5
468
Normal
-0.5
466
Normal
-0.5
375
Tumor
-0.5
1032
Normal
-0.6
514
Normal
-0.6
113
Tumor
-0.6
982
Normal
-0.6
953
Tumor
-0.6
915
Tumor
-0.6
965
Tumor
-0.7
231
Tumor
-0.7
493
Tumor
-0.7
917
Tumor
-0.7
467
Tumor
-0.7
465
Tumor
-0.8
327
Tumor
-0.9
481
Tumor
-1.0
513
Tumor
-1.0
981
Tumor
-1.0
393
Tumor
-1.0
557
Tumor
-1.2
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
