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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SETD5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SETD5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.7
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
36.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
34.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
22.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
554
Normal
1.4
743
Tumor
1.1
426
Normal
1.0
427
Tumor
1.0
423
Tumor
1.0
422
Normal
0.9
414
Normal
0.8
222
Normal
0.8
428
Normal
0.8
737
Tumor
0.8
528
Normal
0.7
421
Tumor
0.7
196
Normal
0.6
424
Normal
0.6
413
Tumor
0.5
131
Tumor
0.5
574
Normal
0.5
214
Normal
0.3
546
Normal
0.3
218
Normal
0.3
568
Normal
0.1
534
Normal
0.1
192
Normal
0.1
217
Tumor
0.1
132
Normal
0.1
727
Tumor
0.1
558
Normal
0.1
135
Tumor
0.1
741
Tumor
0.0
195
Tumor
0.0
553
Tumor
0.0
724
Normal
0.0
141
Tumor
0.0
425
Tumor
0.0
191
Tumor
-0.1
538
Normal
-0.1
744
Normal
-0.1
146
Normal
-0.1
137
Tumor
-0.1
138
Normal
-0.1
545
Tumor
-0.2
571
Tumor
-0.2
142
Normal
-0.2
136
Normal
-0.2
145
Tumor
-0.2
738
Normal
-0.3
728
Normal
-0.3
527
Tumor
-0.3
572
Normal
-0.3
564
Normal
-0.3
533
Tumor
-0.3
742
Normal
-0.4
573
Tumor
-0.4
563
Tumor
-0.4
221
Tumor
-0.4
213
Tumor
-0.5
537
Tumor
-0.6
723
Tumor
-0.7
557
Tumor
-1.1
567
Tumor
-1.3
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
862
Normal
N/A
983
Tumor
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
864
Normal
N/A
1045
Tumor
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
785
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
451
Tumor
N/A
331
Tumor
N/A
452
Normal
N/A
211
Tumor
N/A
332
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
455
Tumor
N/A
697
Tumor
N/A
456
Normal
N/A
698
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
