MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.3 nTPM
HPA Brain:37.8 nTPM
GTEx:14.3 nTPM
FANTOM5:63.2 Scaled Tags Per Million
Pig:67.2 nTPM
Mouse:22.8 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.0
2666 Male, age 74, left hemisphere 41.6
2219 Male, age 76, both hemispheres 39.7
2586 Male, age 75, left hemisphere 39.0
1827 Male, age 72, unknown 38.5
2828 Female, age 72, unknown 37.3
2019 Male, age 18, unknown 36.9
1833 Male, age 53, unknown 36.1
2411 Female, age 72, unknown 36.1
1830 Male, age 51, unknown 36.0
1870 Female, age 42, unknown 29.2
Dorsal raphe nucleus
nTPM: 33.2
2016 Female, age 72, unknown 34.9
2047 Male, age 72, unknown 33.9
1828 Male, age 53, unknown 33.4
2750 Male, age 76, both hemispheres 32.6
2298 Female, age 72, unknown 31.4
Inferior colliculus
nTPM: 37.6
2849 Male, age 72, unknown 40.8
1848 Female, age 42, unknown 39.0
1890 Male, age 53, unknown 36.8
2097 Female, age 72, unknown 33.7
Median raphe nucleus
nTPM: 37.8
2220 Male, age 76, midline 37.8
Periaquaductal grey, anterior
nTPM: 35.9
1947 Male, age 18, unknown 38.9
1795 Male, age 51, unknown 34.8
2502 Female, age 75, unknown 34.0
Periaquaductal grey, dorsal
nTPM: 37.7
2850 Male, age 76, both hemispheres 40.3
1831 Male, age 72, unknown 36.9
1840 Male, age 53, unknown 36.7
2464 Female, age 72, unknown 36.7
Periaquaductal grey, lateral
nTPM: 36.7
2140 Male, age 76, both hemispheres 41.8
2272 Male, age 74, both hemispheres 34.6
2053 Male, age 18, unknown 33.9
Pretectal area
nTPM: 37.2
1816 Male, age 51, unknown 41.7
1944 Female, age 72, unknown 40.3
1815 Male, age 53, unknown 39.4
1817 Female, age 42, unknown 39.4
2316 Male, age 76, right hemisphere 38.5
2407 Male, age 75, both hemispheres 37.8
2007 Male, age 72, unknown 37.6
2667 Female, age 75, unknown 34.0
2825 Male, age 18, unknown 33.8
2273 Male, age 74, both hemispheres 33.6
2224 Female, age 72, unknown 33.5
Red nucleus
nTPM: 33.2
2725 Female, age 75, unknown 36.8
2823 Male, age 76, right hemisphere 36.2
2503 Female, age 72, unknown 34.9
2588 Male, age 74, left hemisphere 34.6
2584 Male, age 75, left hemisphere 34.1
1865 Male, age 51, unknown 33.9
1954 Female, age 42, unknown 33.6
2785 Male, age 18, unknown 32.7
2227 Male, age 72, unknown 32.0
2769 Male, age 72, unknown 30.2
1821 Female, age 72, unknown 29.7
1904 Male, age 53, unknown 29.4
Substantia nigra
nTPM: 34.4
2665 Male, age 74, both hemispheres 43.6
1941 Male, age 53, unknown 37.6
2699 Male, age 18, unknown 35.7
2241 Male, age 72, unknown 34.4
2590 Female, age 75, unknown 34.1
2409 Female, age 72, unknown 32.9
1889 Female, age 72, unknown 32.6
2583 Male, age 75, right hemisphere 31.6
1916 Female, age 42, unknown 31.1
1851 Male, age 51, unknown 30.9
Superior colliculus
nTPM: 36.7
2087 Female, age 72, unknown 40.7
2261 Male, age 18, unknown 39.0
2668 Female, age 75, unknown 38.1
1839 Male, age 51, unknown 37.5
1796 Male, age 53, unknown 36.8
1995 Male, age 72, unknown 36.0
1895 Male, age 76, right hemisphere 35.8
2664 Male, age 75, both hemispheres 35.7
1913 Female, age 42, unknown 34.9
2587 Male, age 74, left hemisphere 33.1
Ventral tegmental area
nTPM: 32.7
2218 Male, age 76, both hemispheres 34.4
2021 Male, age 53, unknown 33.4
2223 Female, age 72, unknown 33.1
1942 Male, age 51, unknown 32.6
1915 Female, age 42, unknown 31.7
2410 Female, age 72, unknown 30.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.3
Samples: 139

Max nTPM: 26.2
Min nTPM: 7.5
Std nTPM: 3.0
Median nTPM: 14.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 26.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 22.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 22.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 21.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 21.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 20.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 19.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 19.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 19.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 18.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 18.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 63.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.2
FF:10158-103A5 76 years, female 63.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 67.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.2
Samples: 4

Max nTPM: 84.7
Min nTPM: 49.9
Sample A Female 49.9
Sample B Female 68.8
Sample C Male 65.5
Sample D Male 84.7
Midbrain
nTPM: 66.8
Samples: 4

Max nTPM: 75.4
Min nTPM: 56.6
Sample A Female 56.6
Sample B Female 65.4
Sample C Male 69.7
Sample D Male 75.4
Periaqueductal gray
nTPM: 66.9
Samples: 3

Max nTPM: 70.3
Min nTPM: 63.7
Sample B Female 70.3
Sample C Male 63.7
Sample D Male 66.7
Superior colliculi
nTPM: 64.2
Samples: 4

Max nTPM: 74.1
Min nTPM: 53.5
Sample A Female 53.5
Sample B Female 59.8
Sample C Male 69.5
Sample D Male 74.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 24.1
Min nTPM: 21.2
Sample A Male 21.2
Sample B Male 24.1
Sample C Female 23.4
Sample D Female 22.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
37 Antisense, RP_Baylor_103285, Mouse strain C57BL/6J (56 days, male) 1.9
38 Antisense, RP_Baylor_103285, Mouse strain C57BL/6J (56 days, male) 1.1

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