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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS37C is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS37C is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.9
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
331
Tumor
1.1
271
Tumor
1.1
131
Tumor
1.0
257
Tumor
0.9
258
Normal
0.9
267
Tumor
0.8
285
Tumor
0.8
147
Tumor
0.8
471
Tumor
0.8
311
Tumor
0.8
813
Tumor
0.7
741
Tumor
0.7
473
Tumor
0.7
743
Tumor
0.7
261
Tumor
0.6
461
Tumor
0.6
185
Tumor
0.6
171
Tumor
0.6
863
Tumor
0.6
815
Tumor
0.6
444
Normal
0.6
943
Tumor
0.6
671
Tumor
0.6
161
Tumor
0.5
533
Tumor
0.5
297
Tumor
0.5
478
Normal
0.5
435
Tumor
0.5
641
Tumor
0.5
268
Normal
0.5
526
Normal
0.5
232
Normal
0.5
375
Tumor
0.4
953
Tumor
0.4
411
Tumor
0.4
413
Tumor
0.4
666
Normal
0.4
221
Tumor
0.4
192
Normal
0.4
391
Tumor
0.4
361
Tumor
0.4
883
Tumor
0.4
524
Normal
0.3
881
Tumor
0.3
393
Tumor
0.3
573
Tumor
0.3
913
Tumor
0.3
123
Tumor
0.3
187
Tumor
0.3
343
Tumor
0.3
363
Tumor
0.3
672
Normal
0.3
434
Normal
0.3
357
Tumor
0.3
518
Normal
0.3
563
Tumor
0.3
272
Normal
0.3
327
Tumor
0.3
127
Tumor
0.3
516
Normal
0.3
427
Tumor
0.3
217
Tumor
0.3
463
Tumor
0.3
477
Tumor
0.3
455
Tumor
0.3
814
Normal
0.3
211
Tumor
0.2
314
Normal
0.2
517
Tumor
0.2
145
Tumor
0.2
421
Tumor
0.2
515
Tumor
0.2
332
Normal
0.2
351
Tumor
0.2
537
Tumor
0.2
124
Normal
0.2
662
Normal
0.2
715
Tumor
0.2
188
Normal
0.2
443
Tumor
0.2
227
Tumor
0.2
661
Tumor
0.2
877
Tumor
0.2
367
Tumor
0.2
195
Tumor
0.2
395
Tumor
0.2
937
Tumor
0.2
126
Normal
0.2
141
Tumor
0.2
1027
Tumor
0.2
777
Tumor
0.2
664
Normal
0.2
262
Normal
0.2
312
Normal
0.2
817
Tumor
0.1
648
Normal
0.1
786
Normal
0.1
951
Tumor
0.1
384
Normal
0.1
617
Tumor
0.1
466
Normal
0.1
865
Tumor
0.1
432
Normal
0.1
498
Normal
0.1
278
Normal
0.1
465
Tumor
0.1
451
Tumor
0.1
467
Tumor
0.1
914
Normal
0.1
492
Normal
0.1
745
Tumor
0.1
112
Tumor
0.1
487
Tumor
0.1
923
Tumor
0.1
298
Normal
0.1
513
Tumor
0.1
231
Tumor
0.1
635
Tumor
0.1
433
Tumor
0.1
191
Tumor
0.1
925
Tumor
0.1
493
Tumor
0.1
365
Tumor
0.1
436
Normal
0.1
456
Normal
0.1
756
Normal
0.1
446
Normal
0.1
426
Normal
0.1
415
Tumor
0.1
483
Tumor
0.1
277
Tumor
0.1
423
Tumor
0.1
283
Tumor
0.1
414
Normal
0.1
222
Normal
0.1
447
Tumor
0.0
627
Tumor
0.0
867
Tumor
0.0
394
Normal
0.0
196
Normal
0.0
386
Normal
0.0
525
Tumor
0.0
172
Normal
0.0
553
Tumor
0.0
737
Tumor
0.0
861
Tumor
0.0
148
Normal
0.0
213
Tumor
0.0
921
Tumor
0.0
313
Tumor
0.0
146
Normal
0.0
385
Tumor
0.0
125
Tumor
0.0
425
Tumor
0.0
355
Tumor
0.0
137
Tumor
0.0
534
Normal
0.0
428
Normal
0.0
665
Tumor
0.0
727
Tumor
0.0
567
Tumor
0.0
873
Tumor
0.0
636
Normal
0.0
392
Normal
0.0
328
Normal
0.0
186
Normal
0.0
284
Normal
0.0
114
Normal
-0.1
574
Normal
-0.1
956
Normal
-0.1
128
Normal
-0.1
755
Tumor
-0.1
716
Normal
-0.1
223
Tumor
-0.1
982
Normal
-0.1
224
Normal
-0.1
412
Normal
-0.1
685
Tumor
-0.1
977
Tumor
-0.1
342
Normal
-0.1
162
Normal
-0.1
663
Tumor
-0.1
214
Normal
-0.1
422
Normal
-0.1
491
Tumor
-0.1
111
Normal
-0.1
713
Tumor
-0.1
698
Normal
-0.1
468
Normal
-0.1
851
Tumor
-0.1
722
Normal
-0.1
616
Normal
-0.1
218
Normal
-0.1
462
Normal
-0.1
341
Tumor
-0.1
396
Normal
-0.1
424
Normal
-0.1
618
Normal
-0.1
696
Normal
-0.1
354
Normal
-0.1
746
Normal
-0.1
366
Normal
-0.1
464
Normal
-0.1
142
Normal
-0.1
368
Normal
-0.1
545
Tumor
-0.1
514
Normal
-0.1
642
Normal
-0.1
474
Normal
-0.1
135
Tumor
-0.1
884
Normal
-0.2
212
Normal
-0.2
228
Normal
-0.2
416
Normal
-0.2
356
Normal
-0.2
358
Normal
-0.2
778
Normal
-0.2
387
Tumor
-0.2
362
Normal
-0.2
546
Normal
-0.2
938
Normal
-0.2
353
Tumor
-0.2
527
Tumor
-0.2
564
Normal
-0.2
1014
Normal
-0.2
615
Tumor
-0.2
482
Normal
-0.2
628
Normal
-0.2
383
Tumor
-0.2
536
Normal
-0.2
497
Tumor
-0.2
364
Normal
-0.2
431
Tumor
-0.2
113
Tumor
-0.2
954
Normal
-0.2
488
Normal
-0.2
286
Normal
-0.2
785
Tumor
-0.2
472
Normal
-0.2
388
Normal
-0.2
1046
Normal
-0.2
697
Tumor
-0.2
686
Normal
-0.2
136
Normal
-0.2
132
Normal
-0.2
952
Normal
-0.2
138
Normal
-0.2
724
Normal
-0.2
981
Tumor
-0.2
445
Tumor
-0.3
864
Normal
-0.3
882
Normal
-0.3
484
Normal
-0.3
344
Normal
-0.3
983
Tumor
-0.3
1044
Normal
-0.3
742
Normal
-0.3
647
Tumor
-0.3
452
Normal
-0.3
352
Normal
-0.3
695
Tumor
-0.3
862
Normal
-0.3
568
Normal
-0.3
917
Tumor
-0.3
494
Normal
-0.3
912
Normal
-0.3
535
Tumor
-0.3
523
Tumor
-0.3
868
Normal
-0.3
481
Tumor
-0.3
721
Tumor
-0.3
857
Tumor
-0.3
376
Normal
-0.3
538
Normal
-0.3
714
Normal
-0.4
944
Normal
-0.4
1021
Tumor
-0.4
818
Normal
-0.4
858
Normal
-0.4
924
Normal
-0.4
744
Normal
-0.4
916
Normal
-0.4
852
Normal
-0.4
978
Normal
-0.4
824
Normal
-0.4
557
Tumor
-0.4
878
Normal
-0.4
571
Tumor
-0.4
738
Normal
-0.4
874
Normal
-0.5
558
Normal
-0.5
926
Normal
-0.5
572
Normal
-0.5
448
Normal
-0.5
1015
Tumor
-0.5
816
Normal
-0.5
922
Normal
-0.6
528
Normal
-0.6
911
Tumor
-0.6
728
Normal
-0.6
1026
Normal
-0.6
723
Tumor
-0.6
1043
Tumor
-0.6
866
Normal
-0.6
918
Normal
-0.6
1013
Tumor
-0.6
823
Tumor
-0.6
1025
Tumor
-0.7
955
Tumor
-0.7
554
Normal
-0.8
915
Tumor
-0.8
984
Normal
-0.8
1016
Normal
-0.8
1042
Normal
-1.0
1022
Normal
-1.0
1028
Normal
-1.0
1031
Tumor
-1.2
1032
Normal
-1.4
1041
Tumor
-2.2
1045
Tumor
-2.7
957
Tumor
N/A
958
Normal
N/A
963
Tumor
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
