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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DDB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
113.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
111.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
103.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
101.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
89.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
88.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
87.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
85.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
82.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
81.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
80.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
79.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
78.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
76.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
76.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
75.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
74.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
70.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
68.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
67.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
66.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
66.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
65.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
65.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
64.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
62.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
61.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
60.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
58.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
58.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
58.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
58.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
57.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
56.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
55.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
55.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
55.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
54.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
54.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
54.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
52.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
52.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
52.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
51.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
51.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
51.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
50.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
50.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
49.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
49.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
49.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
49.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
49.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
48.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
48.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
47.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
47.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
47.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
47.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
47.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
47.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
47.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
46.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
46.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
46.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
46.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
46.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
46.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
46.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
45.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
45.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
45.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
45.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
45.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
45.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
43.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
43.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
43.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
43.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
42.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
42.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
42.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
41.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
41.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
41.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
41.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
41.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
41.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
41.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
41.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
40.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
40.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
39.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
39.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
37.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
37.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
36.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
34.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
33.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
33.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
33.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
32.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
32.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
28.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
28.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
27.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DDB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.2
Number of samples
231
Samples
Sample
Description
TPM
DO48757
0 years, female, NA, stage:3, alive, 480 days
90.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
88.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
82.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
80.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
79.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
77.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
73.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
73.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
72.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
72.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
66.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
64.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
63.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
63.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
62.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
62.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
61.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
60.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
60.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
59.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
58.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
58.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
58.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
58.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
58.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
58.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
57.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
57.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
56.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
56.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
56.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
56.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
55.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
55.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
55.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
54.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
54.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
54.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
53.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
53.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
52.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
52.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
52.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
52.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
51.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
51.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
51.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
50.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
50.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
50.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
50.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
49.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
49.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
49.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
49.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
49.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
48.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
48.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
48.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
48.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
46.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
46.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
46.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
46.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
46.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
46.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
45.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
45.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
45.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
45.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
45.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
45.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
45.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
45.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
45.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
44.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
44.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
44.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
44.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
44.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
43.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
43.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
43.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
42.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
42.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
42.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
42.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
42.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
42.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
42.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
41.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
41.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
41.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
41.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
41.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
41.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
40.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
40.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
40.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
40.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
39.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
39.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
39.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
39.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
38.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
38.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
38.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
38.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
37.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
37.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
37.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
37.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
37.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
37.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
37.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
36.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
36.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
36.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
36.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
35.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
34.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
34.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
34.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
34.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
34.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
33.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
33.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
33.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
32.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
30.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
28.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
28.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
27.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
26.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
813
Tumor
0.4
1027
Tumor
0.4
867
Tumor
0.3
431
Tumor
0.3
925
Tumor
0.3
777
Tumor
0.3
477
Tumor
0.3
865
Tumor
0.3
915
Tumor
0.3
147
Tumor
0.3
161
Tumor
0.3
327
Tumor
0.3
445
Tumor
0.2
128
Normal
0.2
755
Tumor
0.2
981
Tumor
0.2
227
Tumor
0.2
1043
Tumor
0.2
746
Normal
0.2
911
Tumor
0.2
412
Normal
0.2
861
Tumor
0.2
743
Tumor
0.2
285
Tumor
0.2
636
Normal
0.2
435
Tumor
0.2
481
Tumor
0.2
484
Normal
0.2
162
Normal
0.2
924
Normal
0.2
741
Tumor
0.2
127
Tumor
0.2
912
Normal
0.2
727
Tumor
0.2
466
Normal
0.2
914
Normal
0.1
358
Normal
0.1
737
Tumor
0.1
515
Tumor
0.1
742
Normal
0.1
862
Normal
0.1
196
Normal
0.1
482
Normal
0.1
628
Normal
0.1
462
Normal
0.1
416
Normal
0.1
278
Normal
0.1
967
Tumor
0.1
342
Normal
0.1
436
Normal
0.1
816
Normal
0.1
824
Normal
0.1
123
Tumor
0.1
648
Normal
0.1
738
Normal
0.1
523
Tumor
0.1
221
Tumor
0.1
448
Normal
0.1
918
Normal
0.1
172
Normal
0.1
665
Tumor
0.1
864
Normal
0.1
866
Normal
0.1
698
Normal
0.1
1031
Tumor
0.1
1046
Normal
0.1
422
Normal
0.1
938
Normal
0.1
191
Tumor
0.1
868
Normal
0.1
618
Normal
0.1
353
Tumor
0.1
328
Normal
0.1
186
Normal
0.1
1013
Tumor
0.1
1026
Normal
0.1
111
Normal
0.1
432
Normal
0.1
356
Normal
0.1
314
Normal
0.1
415
Tumor
0.1
228
Normal
0.1
922
Normal
0.1
873
Tumor
0.1
272
Normal
0.1
1041
Tumor
0.1
723
Tumor
0.1
1022
Normal
0.1
148
Normal
0.1
298
Normal
0.1
513
Tumor
0.1
494
Normal
0.1
414
Normal
0.1
261
Tumor
0.1
141
Tumor
0.1
528
Normal
0.1
926
Normal
0.1
858
Normal
0.1
662
Normal
0.1
818
Normal
0.1
977
Tumor
0.1
428
Normal
0.1
471
Tumor
0.1
271
Tumor
0.1
142
Normal
0.1
132
Normal
0.1
982
Normal
0.1
878
Normal
0.1
472
Normal
0.1
526
Normal
0.1
452
Normal
0.1
313
Tumor
0.1
944
Normal
0.1
728
Normal
0.1
756
Normal
0.1
214
Normal
0.1
786
Normal
0.1
222
Normal
0.1
546
Normal
0.1
354
Normal
0.1
744
Normal
0.1
527
Tumor
0.0
534
Normal
0.0
957
Tumor
0.0
874
Normal
0.0
136
Normal
0.0
745
Tumor
0.0
778
Normal
0.0
332
Normal
0.0
1016
Normal
0.0
114
Normal
0.0
572
Normal
0.0
568
Normal
0.0
984
Normal
0.0
956
Normal
0.0
474
Normal
0.0
664
Normal
0.0
232
Normal
0.0
964
Normal
0.0
965
Tumor
0.0
955
Tumor
0.0
357
Tumor
0.0
616
Normal
0.0
426
Normal
0.0
258
Normal
0.0
785
Tumor
0.0
953
Tumor
0.0
863
Tumor
0.0
257
Tumor
0.0
138
Normal
0.0
666
Normal
0.0
516
Normal
0.0
355
Tumor
0.0
126
Normal
0.0
267
Tumor
0.0
364
Normal
0.0
446
Normal
0.0
554
Normal
0.0
1042
Normal
0.0
558
Normal
0.0
376
Normal
0.0
958
Normal
0.0
188
Normal
0.0
686
Normal
0.0
427
Tumor
0.0
1028
Normal
0.0
284
Normal
0.0
518
Normal
0.0
1014
Normal
0.0
112
Tumor
0.0
714
Normal
0.0
388
Normal
0.0
146
Normal
0.0
1032
Normal
0.0
1044
Normal
0.0
392
Normal
0.0
286
Normal
0.0
514
Normal
0.0
461
Tumor
0.0
814
Normal
0.0
312
Normal
0.0
641
Tumor
0.0
952
Normal
0.0
564
Normal
0.0
456
Normal
0.0
966
Normal
0.0
615
Tumor
0.0
976
Normal
0.0
224
Normal
0.0
411
Tumor
0.0
716
Normal
0.0
218
Normal
0.0
954
Normal
0.0
212
Normal
0.0
884
Normal
0.0
464
Normal
0.0
715
Tumor
0.0
882
Normal
0.0
642
Normal
0.0
386
Normal
0.0
574
Normal
0.0
478
Normal
0.0
696
Normal
0.0
916
Normal
0.0
366
Normal
0.0
468
Normal
0.0
394
Normal
0.0
487
Tumor
0.0
1025
Tumor
0.0
465
Tumor
0.0
968
Normal
0.0
433
Tumor
0.0
352
Normal
0.0
1015
Tumor
0.0
192
Normal
0.0
647
Tumor
0.0
881
Tumor
0.0
852
Normal
0.0
663
Tumor
-0.1
424
Normal
-0.1
268
Normal
-0.1
413
Tumor
-0.1
423
Tumor
-0.1
344
Normal
-0.1
124
Normal
-0.1
277
Tumor
-0.1
365
Tumor
-0.1
488
Normal
-0.1
362
Normal
-0.1
444
Normal
-0.1
137
Tumor
-0.1
341
Tumor
-0.1
483
Tumor
-0.1
187
Tumor
-0.1
434
Normal
-0.1
262
Normal
-0.1
635
Tumor
-0.1
1045
Tumor
-0.1
563
Tumor
-0.1
421
Tumor
-0.1
463
Tumor
-0.1
443
Tumor
-0.1
113
Tumor
-0.1
685
Tumor
-0.1
553
Tumor
-0.1
978
Normal
-0.1
671
Tumor
-0.1
135
Tumor
-0.1
145
Tumor
-0.1
722
Normal
-0.1
923
Tumor
-0.1
538
Normal
-0.1
724
Normal
-0.1
857
Tumor
-0.1
361
Tumor
-0.1
533
Tumor
-0.1
368
Normal
-0.1
672
Normal
-0.1
883
Tumor
-0.1
131
Tumor
-0.1
492
Normal
-0.1
185
Tumor
-0.1
195
Tumor
-0.1
815
Tumor
-0.1
393
Tumor
-0.1
695
Tumor
-0.1
975
Tumor
-0.1
384
Normal
-0.1
171
Tumor
-0.2
627
Tumor
-0.2
396
Normal
-0.2
517
Tumor
-0.2
963
Tumor
-0.2
455
Tumor
-0.2
213
Tumor
-0.2
567
Tumor
-0.2
937
Tumor
-0.2
211
Tumor
-0.2
524
Normal
-0.2
387
Tumor
-0.2
536
Normal
-0.2
951
Tumor
-0.2
943
Tumor
-0.2
917
Tumor
-0.2
447
Tumor
-0.2
217
Tumor
-0.2
223
Tumor
-0.2
493
Tumor
-0.2
823
Tumor
-0.2
125
Tumor
-0.2
1021
Tumor
-0.2
535
Tumor
-0.2
363
Tumor
-0.3
617
Tumor
-0.3
498
Normal
-0.3
721
Tumor
-0.3
395
Tumor
-0.3
571
Tumor
-0.3
351
Tumor
-0.3
525
Tumor
-0.3
921
Tumor
-0.3
383
Tumor
-0.3
545
Tumor
-0.3
331
Tumor
-0.3
467
Tumor
-0.3
913
Tumor
-0.3
557
Tumor
-0.3
297
Tumor
-0.3
877
Tumor
-0.3
491
Tumor
-0.3
231
Tumor
-0.3
983
Tumor
-0.3
573
Tumor
-0.3
375
Tumor
-0.4
391
Tumor
-0.4
425
Tumor
-0.4
497
Tumor
-0.4
537
Tumor
-0.4
473
Tumor
-0.4
367
Tumor
-0.4
451
Tumor
-0.4
385
Tumor
-0.4
283
Tumor
-0.4
851
Tumor
-0.4
713
Tumor
-0.5
661
Tumor
-0.5
311
Tumor
-0.5
697
Tumor
-0.6
817
Tumor
-0.7
343
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
