MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.5 nTPM
HPA Brain:79.1 nTPM
GTEx:20.5 nTPM
FANTOM5:26.5 Scaled Tags Per Million
Pig:25.9 nTPM
Mouse:18.8 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 79.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.0
2828 Female, age 72, unknown 99.5
2666 Male, age 74, left hemisphere 78.8
2586 Male, age 75, left hemisphere 75.4
1827 Male, age 72, unknown 75.3
2019 Male, age 18, unknown 60.3
2219 Male, age 76, both hemispheres 51.2
1870 Female, age 42, unknown 44.3
2411 Female, age 72, unknown 39.8
1833 Male, age 53, unknown 39.7
1830 Male, age 51, unknown 35.5
Dorsal raphe nucleus
nTPM: 42.1
2298 Female, age 72, unknown 47.7
2750 Male, age 76, both hemispheres 46.2
2047 Male, age 72, unknown 42.3
1828 Male, age 53, unknown 42.1
2016 Female, age 72, unknown 32.4
Inferior colliculus
nTPM: 50.1
2097 Female, age 72, unknown 60.5
1848 Female, age 42, unknown 49.6
1890 Male, age 53, unknown 49.3
2849 Male, age 72, unknown 41.1
Median raphe nucleus
nTPM: 46.9
2220 Male, age 76, midline 46.9
Periaquaductal grey, anterior
nTPM: 69.1
1795 Male, age 51, unknown 91.0
2502 Female, age 75, unknown 61.3
1947 Male, age 18, unknown 55.1
Periaquaductal grey, dorsal
nTPM: 45.8
1831 Male, age 72, unknown 54.8
1840 Male, age 53, unknown 51.0
2464 Female, age 72, unknown 44.7
2850 Male, age 76, both hemispheres 32.8
Periaquaductal grey, lateral
nTPM: 40.4
2053 Male, age 18, unknown 50.0
2140 Male, age 76, both hemispheres 38.6
2272 Male, age 74, both hemispheres 32.6
Pretectal area
nTPM: 79.1
1816 Male, age 51, unknown 148.0
1944 Female, age 72, unknown 126.4
2007 Male, age 72, unknown 111.0
1817 Female, age 42, unknown 109.6
1815 Male, age 53, unknown 94.5
2667 Female, age 75, unknown 63.9
2825 Male, age 18, unknown 46.9
2316 Male, age 76, right hemisphere 46.4
2224 Female, age 72, unknown 46.2
2407 Male, age 75, both hemispheres 45.6
2273 Male, age 74, both hemispheres 31.4
Red nucleus
nTPM: 40.1
2584 Male, age 75, left hemisphere 67.8
2785 Male, age 18, unknown 62.6
2588 Male, age 74, left hemisphere 47.1
2725 Female, age 75, unknown 44.4
2823 Male, age 76, right hemisphere 43.4
2503 Female, age 72, unknown 33.5
2769 Male, age 72, unknown 33.2
1954 Female, age 42, unknown 31.9
2227 Male, age 72, unknown 31.3
1904 Male, age 53, unknown 31.2
1821 Female, age 72, unknown 29.5
1865 Male, age 51, unknown 25.4
Substantia nigra
nTPM: 53.5
2665 Male, age 74, both hemispheres 91.4
1889 Female, age 72, unknown 84.2
1916 Female, age 42, unknown 67.0
1851 Male, age 51, unknown 54.1
1941 Male, age 53, unknown 53.2
2583 Male, age 75, right hemisphere 48.5
2590 Female, age 75, unknown 39.7
2241 Male, age 72, unknown 36.8
2699 Male, age 18, unknown 33.7
2409 Female, age 72, unknown 26.4
Superior colliculus
nTPM: 71.4
2087 Female, age 72, unknown 110.9
2668 Female, age 75, unknown 90.1
1796 Male, age 53, unknown 85.7
2261 Male, age 18, unknown 85.4
2664 Male, age 75, both hemispheres 68.0
1913 Female, age 42, unknown 65.0
1995 Male, age 72, unknown 60.9
1895 Male, age 76, right hemisphere 53.6
1839 Male, age 51, unknown 50.3
2587 Male, age 74, left hemisphere 44.3
Ventral tegmental area
nTPM: 48.1
2218 Male, age 76, both hemispheres 55.9
1915 Female, age 42, unknown 53.3
1942 Male, age 51, unknown 50.4
2410 Female, age 72, unknown 46.4
2223 Female, age 72, unknown 41.6
2021 Male, age 53, unknown 41.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.5
Samples: 139

Max nTPM: 58.5
Min nTPM: 3.9
Std nTPM: 10.0
Median nTPM: 18.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 58.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 46.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 46.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 44.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 41.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 38.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 38.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 38.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 36.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 35.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 35.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.5
FF:10158-103A5 76 years, female 26.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.7
Samples: 4

Max nTPM: 21.7
Min nTPM: 5.1
Sample A Female 21.3
Sample B Female 10.6
Sample C Male 21.7
Sample D Male 5.1
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 57.8
Min nTPM: 5.1
Sample A Female 5.1
Sample B Female 12.2
Sample C Male 57.8
Sample D Male 28.6
Periaqueductal gray
nTPM: 13.9
Samples: 3

Max nTPM: 19.2
Min nTPM: 11.0
Sample B Female 11.0
Sample C Male 19.2
Sample D Male 11.6
Superior colliculi
nTPM: 21.8
Samples: 4

Max nTPM: 32.3
Min nTPM: 11.6
Sample A Female 19.7
Sample B Female 11.6
Sample C Male 32.3
Sample D Male 23.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 19.4
Min nTPM: 17.7
Sample A Male 19.4
Sample B Male 17.7
Sample C Female 19.0
Sample D Female 18.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
72001866 Antisense, RP_050915_02_D08, Mouse strain C57BL/6J (56 days, male) 1.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org