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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPINT2 is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
541.8
Number of samples
349
Samples
Sample
Description
TPM
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
5941.3
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
4403.7
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
2963.0
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
2732.0
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
2471.7
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
2217.2
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
1978.9
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
1935.2
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
1678.3
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
1677.6
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
1560.7
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
1471.7
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
1383.3
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
1375.5
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
1330.9
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
1280.1
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
1254.3
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
1240.2
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
1234.3
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
1220.8
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
1203.0
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
1190.6
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
1182.3
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
1126.2
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
1117.8
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
1115.9
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
1115.9
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
1083.2
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
1080.7
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
1052.8
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
1050.1
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
1050.0
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
1033.5
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
1005.4
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
986.6
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
976.4
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
973.8
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
972.1
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
968.7
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
959.1
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
919.1
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
915.2
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
881.2
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
869.7
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
846.6
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
838.1
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
818.7
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
817.3
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
815.0
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
804.0
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
802.1
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
790.8
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
780.5
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
773.3
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
771.5
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
767.9
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
766.8
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
764.5
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
750.9
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
745.6
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
742.8
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
729.9
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
729.1
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
725.5
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
714.1
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
712.8
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
706.5
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
699.0
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
691.7
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
684.6
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
675.2
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
671.5
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
668.9
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
667.9
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
666.1
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
664.2
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
662.7
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
660.9
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
659.4
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
656.2
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
653.2
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
645.8
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
640.7
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
637.1
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
629.2
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
628.7
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
626.5
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
624.5
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
617.5
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
617.0
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
615.2
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
608.5
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
600.9
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
600.1
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
597.8
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
593.3
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
586.7
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
582.7
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
580.5
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
571.2
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
565.8
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
564.3
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
563.0
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
561.5
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
554.9
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
554.3
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
553.7
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
545.8
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
543.8
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
541.9
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
538.7
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
534.8
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
531.3
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
527.1
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
526.5
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
526.0
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
524.3
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
523.6
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
521.3
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
521.3
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
520.6
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
518.9
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
518.7
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
518.3
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
516.8
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
516.1
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
509.3
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
509.0
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
508.3
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
503.4
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
502.4
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
502.1
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
501.8
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
501.7
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
501.0
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
500.3
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
496.1
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
495.9
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
495.3
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
494.6
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
490.3
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
488.2
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
484.7
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
484.1
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
479.1
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
475.6
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
475.3
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
473.9
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
471.8
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
471.5
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
470.8
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
469.7
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
468.6
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
468.0
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
465.3
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
465.1
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
464.4
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
460.7
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
457.3
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
454.1
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
445.6
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
444.4
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
444.1
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
443.3
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
441.1
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
440.3
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
439.0
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
435.8
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
431.4
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
428.6
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
427.9
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
425.2
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
424.8
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
423.5
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
419.4
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
418.8
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
416.2
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
414.2
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
412.1
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
411.7
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
411.0
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
410.4
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
410.3
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
408.8
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
408.7
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
400.9
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
398.1
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
397.6
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
397.1
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
396.8
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
393.7
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
393.2
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
391.9
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
391.5
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
388.4
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
387.7
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
385.2
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
383.7
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
383.5
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
380.3
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
375.7
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
375.4
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
374.1
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
373.9
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
371.2
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
370.4
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
368.0
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
367.6
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
367.5
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
361.3
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
359.5
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
359.2
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
359.1
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
357.5
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
357.0
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
355.6
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
355.4
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
354.0
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
348.6
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
347.1
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
346.9
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
346.5
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
344.3
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
343.0
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
342.6
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
341.2
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
341.2
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
337.8
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
336.6
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
333.0
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
331.1
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
329.1
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
329.1
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
327.6
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
325.9
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
324.1
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
321.4
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
319.3
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
318.5
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
316.0
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
314.3
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
309.9
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
308.2
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
307.6
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
306.9
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
305.6
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
305.3
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
304.4
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
304.2
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
303.6
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
300.6
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
295.5
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
295.5
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
294.3
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
288.3
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
283.8
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
282.2
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
281.9
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
280.8
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
277.5
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
275.5
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
273.2
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
271.9
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
269.3
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
269.0
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
268.1
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
266.7
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
266.2
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
264.9
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
261.4
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
260.7
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
257.6
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
255.7
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
254.4
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
254.3
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
253.1
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
251.9
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
251.3
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
250.1
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
249.1
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
243.2
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
242.5
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
241.4
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
238.9
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
238.8
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
235.8
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
235.6
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
234.9
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
232.3
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
226.1
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
225.4
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
222.5
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
217.8
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
216.8
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
213.6
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
213.5
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
210.0
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
209.9
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
209.6
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
209.3
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
209.2
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
209.0
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
209.0
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
208.1
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
204.8
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
203.9
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
198.9
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
194.4
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
193.6
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
189.6
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
185.0
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
184.2
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
181.1
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
180.9
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
180.1
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
179.3
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
179.1
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
177.7
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
175.4
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
172.8
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
172.1
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
171.6
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
169.7
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
169.4
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
168.6
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
168.0
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
167.3
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
166.0
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
162.4
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
161.2
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
157.4
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
156.7
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
155.4
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
153.7
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
152.3
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
147.9
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
144.5
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
138.9
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
137.5
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
134.6
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
133.7
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
130.0
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
125.5
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
116.0
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
88.1
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
49.4
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
45.1
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
41.3
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPINT2 is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
840.7
Number of samples
81
Samples
Sample
Description
TPM
DO46330
0 years, female, NA, stage:III, dead, 684 days
4997.9
DO46336
0 years, female, NA, stage:IV, dead, 664 days
4876.8
DO46358
0 years, female, NA, stage:III, dead, 423 days
2811.1
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
2637.5
DO46350
0 years, female, NA, stage:III, dead, 886 days
2302.9
DO46396
0 years, female, NA, stage:III, dead, 583 days
1920.9
DO46348
0 years, female, NA, stage:IV, dead, 287 days
1867.2
DO46468
0 years, female, NA, stage:III, alive, 2776 days
1777.8
DO46356
0 years, female, NA, stage:III, dead, 911 days
1560.4
DO46338
0 years, female, NA, stage:III, dead, 596 days
1493.3
DO46551
0 years, female, NA, stage:III, dead, 1055 days
1492.7
DO46463
0 years, female, NA, stage:III, dead, 2451 days
1480.1
DO46602
0 years, female, NA, stage:III, dead, 205 days
1230.5
DO46408
0 years, female, NA, stage:III, dead, 489 days
1228.2
DO46329
0 years, female, NA, stage:III, dead, 1699 days
1105.6
DO46364
0 years, female, NA, stage:III, dead, 806 days
1046.6
DO46380
0 years, female, NA, stage:III, dead, 1423 days
995.6
DO46376
0 years, female, NA, stage:III, dead, 1430 days
988.1
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
987.6
DO46448
0 years, female, NA, stage:III, dead, 654 days
954.5
DO46362
0 years, female, NA, stage:III, dead, 1639 days
935.3
DO46581
0 years, female, NA, stage:III, dead, 408 days
912.8
DO46390
0 years, female, NA, stage:III, dead, 374 days
909.9
DO46443
0 years, female, NA, stage:III, dead, 2464 days
887.4
DO46538
0 years, female, NA, stage:III, dead, 1527 days
887.1
DO46453
0 years, female, NA, stage:III, dead, 3294 days
849.1
DO46340
0 years, female, NA, stage:III, dead, 616 days
773.1
DO46368
0 years, female, NA, stage:III, dead, 2879 days
757.3
DO46378
0 years, female, NA, stage:III, alive, 843 days
722.1
DO46374
0 years, female, NA, stage:III, dead, 1409 days
711.1
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
710.0
DO46382
0 years, female, NA, stage:IV, dead, 311 days
675.0
DO46370
0 years, female, NA, stage:III, dead, 1727 days
653.4
DO46372
0 years, female, NA, stage:III, dead, 1326 days
628.7
DO46334
0 years, female, NA, stage:III, dead, 496 days
626.2
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
623.4
DO46606
0 years, female, NA, stage:III, alive, 804 days
621.3
DO46493
0 years, female, NA, stage:IV, alive, 839 days
599.2
DO46354
0 years, female, NA, stage:III, dead, 843 days
570.7
DO46533
0 years, female, NA, stage:III, alive, 3667 days
558.2
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
550.9
DO46566
0 years, female, NA, stage:III, dead, 673 days
543.0
DO46392
0 years, female, NA, stage:III, dead, 628 days
523.5
DO46436
0 years, female, NA, stage:III, alive, 3193 days
518.2
DO46400
0 years, female, NA, stage:III, dead, 719 days
505.9
DO46568
0 years, female, NA, stage:III, dead, 320 days
505.7
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
503.8
DO46388
0 years, female, NA, stage:III, dead, 413 days
501.4
DO46591
0 years, female, NA, stage:III, dead, 195 days
501.0
DO46342
0 years, female, NA, stage:III, dead, 1398 days
499.5
DO46576
0 years, female, NA, stage:III, alive, 133 days
470.7
DO46352
0 years, female, NA, stage:III, dead, 677 days
468.6
DO46561
0 years, female, NA, stage:III, dead, 195 days
466.5
DO46560
0 years, female, NA, stage:IV, dead, 286 days
465.9
DO46528
0 years, female, NA, stage:III, alive, 6139 days
442.6
DO46571
0 years, female, NA, stage:III, dead, 243 days
426.4
DO46346
0 years, female, NA, stage:III, dead, 1187 days
425.8
DO46325
0 years, female, NA, stage:III, dead, 477 days
410.8
DO46328
0 years, female, NA, stage:III, dead, 972 days
400.6
DO46332
0 years, female, NA, stage:III, dead, 689 days
398.7
DO46588
0 years, female, NA, stage:III, dead, 438 days
397.8
DO46518
0 years, female, NA, stage:III, alive, 2960 days
395.6
DO46384
0 years, female, NA, stage:III, dead, 614 days
393.6
DO46333
0 years, female, NA, stage:III, dead, 359 days
393.1
DO46386
0 years, female, NA, stage:III, dead, 1162 days
390.9
DO46546
0 years, female, NA, stage:III, dead, 1889 days
385.4
DO46508
0 years, female, NA, stage:III, dead, 2101 days
346.8
DO46597
0 years, female, NA, stage:III, dead, 393 days
320.8
DO46327
0 years, female, NA, stage:III, dead, 184 days
316.1
DO46586
0 years, female, NA, stage:III, dead, 1019 days
311.8
DO46344
0 years, female, NA, stage:III, dead, 642 days
291.9
DO46326
0 years, female, NA, stage:III, dead, 701 days
285.8
DO46366
0 years, female, NA, stage:III, dead, 2054 days
270.7
DO46398
0 years, female, NA, stage:III, alive, 437 days
254.5
DO46404
0 years, female, NA, stage:III, dead, 690 days
242.6
DO46412
0 years, female, NA, stage:III, dead, 597 days
241.4
DO46331
0 years, female, NA, stage:III, dead, 612 days
236.9
DO46432
0 years, female, NA, stage:III, alive, 2218 days
228.5
DO46402
0 years, female, NA, stage:III, dead, 511 days
188.7
DO46611
0 years, female, NA, stage:III, dead, 734 days
156.8
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
155.5
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
1.2
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
0.9
1772e913-f62e-446a-8cf3-720348_D2
Tumor
0.8
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
0.6
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
0.6
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
0.5
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
0.4
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
0.4
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
0.4
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
0.3
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
0.3
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
0.3
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
0.2
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
0.2
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
0.1
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
0.1
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
0.0
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
0.0
285fed94-1495-448e-879b-b55de9_D2
Tumor
0.0
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
0.0
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
0.0
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
-0.1
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
-0.1
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
-0.1
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
-0.2
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
-0.2
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
-0.2
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
-0.3
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
-0.3
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
-0.3
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
-0.3
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
-0.3
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
-0.4
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
-0.4
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
-0.4
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
-0.4
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
-0.4
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
-0.4
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
-0.5
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
-0.5
1a10c200-3895-4648-b951-94f99f_D2
Tumor
-0.5
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
-0.5
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
-0.6
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
-0.6
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
-0.6
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
-0.6
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
-0.6
161317f3-1a39-438e-af45-cd2502_D2
Tumor
-0.6
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
-0.6
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
-0.6
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
-0.7
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
-0.7
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
-0.7
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
-0.7
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
-0.7
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
-0.7
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
-0.7
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
-0.8
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
-0.8
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
-0.8
e9d416e7-f661-400a-896e-388545_D2
Tumor
-0.8
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-0.9
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
-0.9
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
-0.9
15524912-685a-47ce-a824-567848_D2
Tumor
-0.9
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
-1.0
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
-1.0
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
-1.0
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
-1.0
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
-1.0
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
-1.0
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
-1.0
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
-1.0
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
-1.0
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
-1.1
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
-1.1
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
-1.1
10c2d629-0287-4511-ac25-f29031_D2
Tumor
-1.1
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
-1.2
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
-1.2
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
-1.2
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
-1.2
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
-1.2
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
-1.2
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
-1.3
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
-1.3
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
-1.3
2f901c90-617e-46da-9fac-d68369_D2
Tumor
-1.3
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
-1.3
a65d8e76-640f-4341-a561-afbb57_D2
Normal
-1.4
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
-1.4
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
-1.5
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
-1.5
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
-1.5
340a3769-3031-41ae-bb08-a2f696_D2
Normal
-1.5
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-1.6
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
-1.6
1db5574d-aca7-403c-8100-6e705f_D2
Normal
-1.6
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
-1.7
a3a26070-fb84-406a-8280-d555e6_D2
Normal
-1.7
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
-1.7
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
-1.7
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
-1.8
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
-1.8
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
-1.9
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
-2.2
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
-2.4
21efd60f-6a31-4b98-9477-16a905_D2
Normal
-2.9
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.