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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPINT2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
735.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
618.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
580.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
573.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
511.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
478.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
444.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
436.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
409.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
407.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
366.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
316.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
316.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
275.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
251.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
241.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
238.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
237.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
234.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
232.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
230.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
209.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
204.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
188.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
183.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
178.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
174.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
166.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
166.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
154.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
143.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
129.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
128.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
121.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
103.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
94.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
88.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
80.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
77.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
77.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
72.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
69.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
65.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
63.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
62.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
56.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
53.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
52.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
49.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
47.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
45.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
45.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
43.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
40.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
40.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
38.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
38.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
32.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPINT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.5
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
2248.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
962.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
453.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
449.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
416.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
401.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
370.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
250.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
239.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
227.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
203.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
180.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
174.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
168.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
151.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
129.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
127.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
115.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
114.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
105.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
103.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
93.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
81.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
71.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
68.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
60.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
49.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
36.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
671
Tumor
3.8
331
Tumor
3.0
921
Tumor
2.9
881
Tumor
2.5
471
Tumor
2.5
817
Tumor
2.4
545
Tumor
2.4
1021
Tumor
2.1
211
Tumor
2.1
297
Tumor
2.1
271
Tumor
2.0
527
Tumor
1.9
553
Tumor
1.8
883
Tumor
1.8
487
Tumor
1.7
951
Tumor
1.6
1031
Tumor
1.6
697
Tumor
1.6
1025
Tumor
1.5
427
Tumor
1.4
461
Tumor
1.2
525
Tumor
1.0
455
Tumor
0.8
574
Normal
0.5
456
Normal
0.3
214
Normal
0.3
222
Normal
0.3
267
Tumor
0.3
557
Tumor
0.2
647
Tumor
0.2
924
Normal
0.2
422
Normal
0.2
221
Tumor
0.2
312
Normal
0.2
195
Tumor
0.2
196
Normal
0.2
916
Normal
0.2
573
Tumor
0.1
332
Normal
0.1
192
Normal
0.1
447
Tumor
0.1
823
Tumor
0.1
524
Normal
0.1
922
Normal
0.1
918
Normal
0.0
852
Normal
0.0
311
Tumor
0.0
914
Normal
0.0
426
Normal
-0.1
268
Normal
-0.1
231
Tumor
-0.1
917
Tumor
-0.1
478
Normal
-0.1
218
Normal
-0.1
663
Tumor
-0.1
217
Tumor
-0.1
533
Tumor
-0.1
926
Normal
-0.1
538
Normal
-0.2
1042
Normal
-0.2
224
Normal
-0.2
314
Normal
-0.2
228
Normal
-0.2
492
Normal
-0.2
816
Normal
-0.2
277
Tumor
-0.2
563
Tumor
-0.2
664
Normal
-0.2
452
Normal
-0.2
1022
Normal
-0.2
428
Normal
-0.2
662
Normal
-0.3
536
Normal
-0.3
516
Normal
-0.3
212
Normal
-0.3
464
Normal
-0.3
424
Normal
-0.3
558
Normal
-0.3
1027
Tumor
-0.3
284
Normal
-0.3
518
Normal
-0.4
262
Normal
-0.4
913
Tumor
-0.4
698
Normal
-0.4
815
Tumor
-0.4
568
Normal
-0.4
498
Normal
-0.4
912
Normal
-0.4
1028
Normal
-0.4
857
Tumor
-0.4
546
Normal
-0.4
882
Normal
-0.4
666
Normal
-0.4
474
Normal
-0.4
232
Normal
-0.4
278
Normal
-0.4
466
Normal
-0.4
191
Tumor
-0.4
956
Normal
-0.4
414
Normal
-0.4
554
Normal
-0.4
1032
Normal
-0.4
283
Tumor
-0.4
537
Tumor
-0.4
534
Normal
-0.5
467
Tumor
-0.5
572
Normal
-0.5
257
Tumor
-0.5
567
Tumor
-0.5
213
Tumor
-0.5
944
Normal
-0.5
1026
Normal
-0.5
877
Tumor
-0.5
884
Normal
-0.6
1045
Tumor
-0.6
484
Normal
-0.6
298
Normal
-0.6
514
Normal
-0.6
925
Tumor
-0.6
472
Normal
-0.6
462
Normal
-0.6
468
Normal
-0.6
858
Normal
-0.6
564
Normal
-0.7
528
Normal
-0.7
258
Normal
-0.7
448
Normal
-0.7
482
Normal
-0.7
648
Normal
-0.7
1046
Normal
-0.7
878
Normal
-0.7
223
Tumor
-0.7
851
Tumor
-0.7
286
Normal
-0.7
488
Normal
-0.7
421
Tumor
-0.8
272
Normal
-0.8
494
Normal
-0.8
818
Normal
-0.8
952
Normal
-0.8
1044
Normal
-0.9
491
Tumor
-0.9
661
Tumor
-0.9
937
Tumor
-0.9
423
Tumor
-0.9
535
Tumor
-0.9
513
Tumor
-0.9
451
Tumor
-0.9
497
Tumor
-0.9
477
Tumor
-0.9
313
Tumor
-0.9
526
Normal
-1.0
1043
Tumor
-1.0
465
Tumor
-1.0
915
Tumor
-1.1
943
Tumor
-1.1
227
Tumor
-1.1
515
Tumor
-1.1
923
Tumor
-1.1
911
Tumor
-1.1
665
Tumor
-1.2
1041
Tumor
-1.2
481
Tumor
-1.2
413
Tumor
-1.2
824
Normal
-1.2
483
Tumor
-1.2
463
Tumor
-1.2
493
Tumor
-1.2
285
Tumor
-1.2
523
Tumor
-1.2
938
Normal
-1.3
954
Normal
-1.3
517
Tumor
-1.3
261
Tumor
-1.4
571
Tumor
-1.6
955
Tumor
-1.7
425
Tumor
-2.0
953
Tumor
-2.9
473
Tumor
-3.0
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
672
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
