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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VKORC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
178.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
552.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
531.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
460.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
421.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
386.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
384.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
381.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
381.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
379.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
375.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
372.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
371.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
367.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
367.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
359.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
358.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
352.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
351.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
342.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
336.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
328.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
326.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
325.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
321.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
320.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
319.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
317.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
317.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
316.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
315.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
313.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
312.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
312.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
310.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
309.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
308.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
303.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
303.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
297.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
294.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
293.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
292.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
292.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
292.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
290.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
288.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
284.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
280.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
280.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
279.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
276.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
274.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
268.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
267.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
266.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
264.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
264.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
261.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
259.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
252.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
252.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
251.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
250.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
248.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
241.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
240.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
237.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
237.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
237.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
234.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
233.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
233.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
232.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
232.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
232.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
231.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
231.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
231.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
230.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
229.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
228.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
227.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
227.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
227.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
227.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
226.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
225.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
225.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
223.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
222.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
221.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
220.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
220.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
218.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
216.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
216.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
215.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
215.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
214.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
214.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
214.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
213.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
212.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
211.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
211.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
210.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
209.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
208.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
208.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
208.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
208.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
208.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
206.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
206.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
205.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
205.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
205.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
204.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
203.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
203.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
202.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
199.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
198.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
196.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
196.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
195.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
195.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
194.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
193.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
193.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
192.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
192.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
192.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
191.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
190.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
189.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
188.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
188.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
188.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
188.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
187.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
187.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
187.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
187.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
187.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
186.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
184.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
183.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
183.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
182.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
181.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
181.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
181.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
180.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
179.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
179.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
177.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
176.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
176.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
176.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
175.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
175.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
173.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
170.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
169.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
169.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
169.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
168.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
167.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
165.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
164.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
164.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
163.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
163.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
163.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
163.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
162.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
161.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
161.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
161.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
160.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
160.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
160.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
159.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
159.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
159.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
159.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
159.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
159.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
158.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
158.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
157.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
156.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
156.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
156.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
155.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
155.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
154.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
153.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
153.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
153.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
153.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
152.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
150.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
150.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
150.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
149.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
149.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
148.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
147.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
146.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
146.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
146.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
146.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
144.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
144.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
143.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
143.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
142.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
142.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
141.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
140.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
140.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
140.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
140.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
139.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
139.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
138.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
137.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
136.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
136.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
136.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
136.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
136.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
136.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
135.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
134.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
134.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
132.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
132.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
132.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
131.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
131.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
130.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
130.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
129.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
129.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
128.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
127.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
127.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
125.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
124.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
124.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
124.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
123.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
122.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
122.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
122.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
122.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
121.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
121.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
120.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
120.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
119.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
119.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
119.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
115.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
114.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
114.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
113.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
113.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
112.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
112.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
111.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
111.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
111.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
111.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
110.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
110.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
108.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
108.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
108.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
107.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
107.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
106.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
106.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
106.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
106.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
105.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
104.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
104.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
103.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
102.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
101.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
100.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
99.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
98.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
98.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
98.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
98.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
98.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
97.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
97.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
97.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
96.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
96.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
96.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
96.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
96.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
95.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
94.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
94.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
93.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
93.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
91.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
91.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
91.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
91.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
91.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
90.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
88.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
88.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
88.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
87.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
87.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
86.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
80.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
80.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
79.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
78.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
78.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
78.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
77.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
77.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
77.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
77.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
76.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
75.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
75.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
73.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
73.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
72.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
72.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
71.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
70.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
69.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
69.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
67.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
67.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
67.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
65.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
64.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
64.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
62.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
60.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
58.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
58.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
56.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
53.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
50.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
41.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VKORC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
83.4
Number of samples
231
Samples
Sample
Description
TPM
DO48701
0 years, male, NA, stage:2, alive, 780 days
409.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
391.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
278.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
199.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
195.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
188.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
177.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
170.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
169.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
164.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
159.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
158.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
156.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
153.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
147.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
145.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
145.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
139.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
137.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
134.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
134.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
133.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
133.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
131.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
130.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
128.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
128.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
128.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
126.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
125.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
124.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
124.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
123.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
121.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
120.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
118.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
117.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
114.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
113.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
113.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
112.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
112.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
111.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
109.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
109.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
107.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
105.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
104.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
102.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
102.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
101.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
101.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
99.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
99.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
99.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
99.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
98.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
98.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
98.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
98.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
97.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
96.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
96.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
96.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
95.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
95.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
94.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
92.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
92.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
92.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
92.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
91.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
91.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
91.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
91.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
91.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
90.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
90.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
90.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
89.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
89.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
89.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
88.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
87.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
86.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
86.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
85.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
84.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
84.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
84.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
83.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
83.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
82.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
82.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
81.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
81.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
80.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
80.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
79.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
79.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
79.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
79.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
78.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
77.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
77.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
77.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
76.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
76.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
75.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
75.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
75.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
75.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
74.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
74.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
72.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
72.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
72.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
72.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
72.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
72.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
71.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
71.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
71.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
71.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
70.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
70.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
70.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
70.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
69.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
69.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
69.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
69.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
68.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
67.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
67.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
67.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
67.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
66.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
65.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
65.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
65.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
65.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
65.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
64.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
64.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
64.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
64.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
63.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
63.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
63.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
63.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
63.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
63.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
62.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
62.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
62.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
61.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
61.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
61.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
61.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
60.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
60.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
60.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
60.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
59.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
58.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
58.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
58.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
58.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
57.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
57.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
57.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
56.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
56.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
55.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
55.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
55.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
55.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
54.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
54.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
53.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
53.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
53.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
53.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
52.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
52.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
52.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
52.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
51.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
51.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
50.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
49.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
49.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
47.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
47.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
47.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
46.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
46.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
45.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
44.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
43.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
42.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
41.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
40.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
37.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
37.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
37.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
32.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
32.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.5
1015
Tumor
1.1
1013
Tumor
1.0
878
Normal
0.9
516
Normal
0.7
514
Normal
0.7
357
Tumor
0.7
518
Normal
0.7
952
Normal
0.6
1016
Normal
0.6
915
Tumor
0.6
698
Normal
0.6
554
Normal
0.6
515
Tumor
0.6
465
Tumor
0.5
536
Normal
0.5
513
Tumor
0.5
874
Normal
0.5
918
Normal
0.5
863
Tumor
0.5
286
Normal
0.5
817
Tumor
0.5
365
Tumor
0.5
445
Tumor
0.5
1028
Normal
0.4
938
Normal
0.4
434
Normal
0.4
364
Normal
0.4
534
Normal
0.4
278
Normal
0.4
925
Tumor
0.4
492
Normal
0.4
461
Tumor
0.3
984
Normal
0.3
523
Tumor
0.3
473
Tumor
0.3
914
Normal
0.3
142
Normal
0.3
546
Normal
0.3
968
Normal
0.3
355
Tumor
0.3
528
Normal
0.3
1014
Normal
0.3
746
Normal
0.3
484
Normal
0.3
474
Normal
0.3
1026
Normal
0.2
697
Tumor
0.2
524
Normal
0.2
977
Tumor
0.2
231
Tumor
0.2
963
Tumor
0.2
867
Tumor
0.2
966
Normal
0.2
145
Tumor
0.2
428
Normal
0.2
714
Normal
0.2
497
Tumor
0.2
1027
Tumor
0.2
312
Normal
0.2
538
Normal
0.2
412
Normal
0.2
785
Tumor
0.2
755
Tumor
0.2
943
Tumor
0.2
111
Normal
0.2
327
Tumor
0.2
526
Normal
0.2
228
Normal
0.1
924
Normal
0.1
311
Tumor
0.1
146
Normal
0.1
297
Tumor
0.1
212
Normal
0.1
663
Tumor
0.1
913
Tumor
0.1
493
Tumor
0.1
978
Normal
0.1
477
Tumor
0.1
813
Tumor
0.1
917
Tumor
0.1
866
Normal
0.1
868
Normal
0.1
862
Normal
0.1
911
Tumor
0.1
696
Normal
0.1
527
Tumor
0.1
944
Normal
0.1
864
Normal
0.1
728
Normal
0.1
1022
Normal
0.1
965
Tumor
0.0
455
Tumor
0.0
214
Normal
0.0
128
Normal
0.0
916
Normal
0.0
982
Normal
0.0
741
Tumor
0.0
958
Normal
0.0
1021
Tumor
0.0
354
Normal
0.0
695
Tumor
0.0
452
Normal
0.0
816
Normal
0.0
171
Tumor
0.0
545
Tumor
0.0
857
Tumor
0.0
922
Normal
0.0
715
Tumor
0.0
448
Normal
0.0
951
Tumor
0.0
664
Normal
0.0
436
Normal
0.0
954
Normal
0.0
472
Normal
0.0
1045
Tumor
0.0
123
Tumor
0.0
433
Tumor
0.0
137
Tumor
0.0
981
Tumor
0.0
953
Tumor
0.0
462
Normal
0.0
873
Tumor
0.0
852
Normal
0.0
921
Tumor
0.0
956
Normal
0.0
738
Normal
0.0
861
Tumor
0.0
446
Normal
0.0
424
Normal
0.0
964
Normal
-0.1
778
Normal
-0.1
494
Normal
-0.1
1032
Normal
-0.1
351
Tumor
-0.1
937
Tumor
-0.1
563
Tumor
-0.1
756
Normal
-0.1
358
Normal
-0.1
284
Normal
-0.1
923
Tumor
-0.1
716
Normal
-0.1
224
Normal
-0.1
211
Tumor
-0.1
464
Normal
-0.1
912
Normal
-0.1
983
Tumor
-0.1
261
Tumor
-0.1
1046
Normal
-0.1
967
Tumor
-0.1
466
Normal
-0.1
124
Normal
-0.1
568
Normal
-0.1
478
Normal
-0.1
451
Tumor
-0.1
571
Tumor
-0.1
188
Normal
-0.1
553
Tumor
-0.2
232
Normal
-0.2
482
Normal
-0.2
955
Tumor
-0.2
456
Normal
-0.2
572
Normal
-0.2
422
Normal
-0.2
883
Tumor
-0.2
298
Normal
-0.2
268
Normal
-0.2
975
Tumor
-0.2
786
Normal
-0.2
564
Normal
-0.2
976
Normal
-0.2
483
Tumor
-0.2
328
Normal
-0.2
525
Tumor
-0.2
814
Normal
-0.2
491
Tumor
-0.2
882
Normal
-0.2
558
Normal
-0.2
647
Tumor
-0.2
533
Tumor
-0.2
162
Normal
-0.2
362
Normal
-0.3
435
Tumor
-0.3
343
Tumor
-0.3
421
Tumor
-0.3
823
Tumor
-0.3
926
Normal
-0.3
283
Tumor
-0.3
223
Tumor
-0.3
415
Tumor
-0.3
411
Tumor
-0.3
627
Tumor
-0.3
277
Tumor
-0.3
313
Tumor
-0.3
1041
Tumor
-0.3
686
Normal
-0.3
744
Normal
-0.3
858
Normal
-0.3
356
Normal
-0.3
567
Tumor
-0.3
368
Normal
-0.3
361
Tumor
-0.3
262
Normal
-0.3
722
Normal
-0.3
272
Normal
-0.3
416
Normal
-0.3
574
Normal
-0.3
1044
Normal
-0.3
488
Normal
-0.3
824
Normal
-0.3
342
Normal
-0.3
414
Normal
-0.3
432
Normal
-0.3
498
Normal
-0.3
487
Tumor
-0.4
1042
Normal
-0.4
742
Normal
-0.4
957
Tumor
-0.4
222
Normal
-0.4
426
Normal
-0.4
314
Normal
-0.4
635
Tumor
-0.4
884
Normal
-0.4
386
Normal
-0.4
344
Normal
-0.4
341
Tumor
-0.4
616
Normal
-0.4
447
Tumor
-0.4
881
Tumor
-0.4
818
Normal
-0.4
481
Tumor
-0.4
423
Tumor
-0.4
376
Normal
-0.4
258
Normal
-0.4
127
Tumor
-0.4
388
Normal
-0.5
387
Tumor
-0.5
573
Tumor
-0.5
648
Normal
-0.5
366
Normal
-0.5
727
Tumor
-0.5
721
Tumor
-0.5
187
Tumor
-0.5
148
Normal
-0.5
172
Normal
-0.5
535
Tumor
-0.5
114
Normal
-0.5
1043
Tumor
-0.5
352
Normal
-0.5
427
Tumor
-0.5
444
Normal
-0.5
636
Normal
-0.5
723
Tumor
-0.5
666
Normal
-0.5
628
Normal
-0.5
138
Normal
-0.5
131
Tumor
-0.6
161
Tumor
-0.6
332
Normal
-0.6
468
Normal
-0.6
815
Tumor
-0.6
141
Tumor
-0.6
267
Tumor
-0.6
1025
Tumor
-0.6
777
Tumor
-0.6
395
Tumor
-0.6
642
Normal
-0.6
186
Normal
-0.6
112
Tumor
-0.6
662
Normal
-0.6
713
Tumor
-0.6
392
Normal
-0.6
185
Tumor
-0.6
672
Normal
-0.6
375
Tumor
-0.6
737
Tumor
-0.6
213
Tumor
-0.6
877
Tumor
-0.6
192
Normal
-0.6
463
Tumor
-0.7
615
Tumor
-0.7
618
Normal
-0.7
557
Tumor
-0.7
132
Normal
-0.7
195
Tumor
-0.7
384
Normal
-0.7
724
Normal
-0.7
383
Tumor
-0.7
125
Tumor
-0.7
217
Tumor
-0.7
285
Tumor
-0.7
394
Normal
-0.7
353
Tumor
-0.7
517
Tumor
-0.7
467
Tumor
-0.7
196
Normal
-0.8
136
Normal
-0.8
271
Tumor
-0.8
257
Tumor
-0.8
393
Tumor
-0.8
367
Tumor
-0.8
218
Normal
-0.8
471
Tumor
-0.8
126
Normal
-0.8
147
Tumor
-0.8
1031
Tumor
-0.8
227
Tumor
-0.8
413
Tumor
-0.8
191
Tumor
-0.8
431
Tumor
-0.8
661
Tumor
-0.9
537
Tumor
-0.9
865
Tumor
-0.9
671
Tumor
-0.9
665
Tumor
-0.9
851
Tumor
-0.9
617
Tumor
-0.9
135
Tumor
-0.9
331
Tumor
-0.9
113
Tumor
-0.9
363
Tumor
-1.0
743
Tumor
-1.0
391
Tumor
-1.0
745
Tumor
-1.0
443
Tumor
-1.1
396
Normal
-1.1
385
Tumor
-1.1
425
Tumor
-1.3
641
Tumor
-1.3
221
Tumor
-1.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.