MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.7 nTPM
HPA Brain:22.0 nTPM
GTEx:37.7 nTPM
FANTOM5:94.6 Scaled Tags Per Million
Pig:21.5 nTPM
Mouse:87.1 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.8
1870 Female, age 42, unknown 18.9
2219 Male, age 76, both hemispheres 18.7
2411 Female, age 72, unknown 18.7
2666 Male, age 74, left hemisphere 18.1
1827 Male, age 72, unknown 17.5
2019 Male, age 18, unknown 15.8
2586 Male, age 75, left hemisphere 15.4
2828 Female, age 72, unknown 15.1
1833 Male, age 53, unknown 14.8
1830 Male, age 51, unknown 14.5
Dorsal raphe nucleus
nTPM: 15.4
2016 Female, age 72, unknown 17.2
1828 Male, age 53, unknown 16.4
2750 Male, age 76, both hemispheres 16.2
2047 Male, age 72, unknown 14.7
2298 Female, age 72, unknown 12.4
Inferior colliculus
nTPM: 17.1
1890 Male, age 53, unknown 18.3
2849 Male, age 72, unknown 17.6
1848 Female, age 42, unknown 17.0
2097 Female, age 72, unknown 15.6
Median raphe nucleus
nTPM: 22.0
2220 Male, age 76, midline 22.0
Periaquaductal grey, anterior
nTPM: 17.6
2502 Female, age 75, unknown 19.3
1947 Male, age 18, unknown 18.7
1795 Male, age 51, unknown 14.8
Periaquaductal grey, dorsal
nTPM: 19.2
1840 Male, age 53, unknown 22.7
2850 Male, age 76, both hemispheres 20.1
2464 Female, age 72, unknown 18.4
1831 Male, age 72, unknown 15.6
Periaquaductal grey, lateral
nTPM: 16.6
2053 Male, age 18, unknown 18.3
2140 Male, age 76, both hemispheres 16.4
2272 Male, age 74, both hemispheres 15.1
Pretectal area
nTPM: 18.2
2007 Male, age 72, unknown 23.2
1816 Male, age 51, unknown 20.8
1944 Female, age 72, unknown 20.3
1817 Female, age 42, unknown 18.9
2407 Male, age 75, both hemispheres 18.2
2667 Female, age 75, unknown 17.4
2825 Male, age 18, unknown 17.4
1815 Male, age 53, unknown 17.3
2316 Male, age 76, right hemisphere 17.1
2224 Female, age 72, unknown 16.0
2273 Male, age 74, both hemispheres 14.2
Red nucleus
nTPM: 16.7
2725 Female, age 75, unknown 21.3
2588 Male, age 74, left hemisphere 19.8
2503 Female, age 72, unknown 18.4
1865 Male, age 51, unknown 17.1
2584 Male, age 75, left hemisphere 16.9
2823 Male, age 76, right hemisphere 16.9
1954 Female, age 42, unknown 16.1
2227 Male, age 72, unknown 16.0
1821 Female, age 72, unknown 15.7
2785 Male, age 18, unknown 14.7
1904 Male, age 53, unknown 14.5
2769 Male, age 72, unknown 13.4
Substantia nigra
nTPM: 19.2
2409 Female, age 72, unknown 23.8
1916 Female, age 42, unknown 22.8
2241 Male, age 72, unknown 22.6
1851 Male, age 51, unknown 21.7
1941 Male, age 53, unknown 18.0
2699 Male, age 18, unknown 18.0
1889 Female, age 72, unknown 16.5
2665 Male, age 74, both hemispheres 16.4
2583 Male, age 75, right hemisphere 16.3
2590 Female, age 75, unknown 16.3
Superior colliculus
nTPM: 17.8
1796 Male, age 53, unknown 21.7
1895 Male, age 76, right hemisphere 20.4
2261 Male, age 18, unknown 19.7
1913 Female, age 42, unknown 19.4
1995 Male, age 72, unknown 17.4
1839 Male, age 51, unknown 17.0
2664 Male, age 75, both hemispheres 16.1
2087 Female, age 72, unknown 15.7
2587 Male, age 74, left hemisphere 15.5
2668 Female, age 75, unknown 15.2
Ventral tegmental area
nTPM: 18.1
2218 Male, age 76, both hemispheres 19.5
1915 Female, age 42, unknown 19.3
1942 Male, age 51, unknown 18.8
2223 Female, age 72, unknown 18.7
2410 Female, age 72, unknown 16.9
2021 Male, age 53, unknown 15.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 37.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.7
Samples: 139

Max nTPM: 63.7
Min nTPM: 19.3
Std nTPM: 8.0
Median nTPM: 36.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 63.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 61.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 60.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 57.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 57.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 55.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 54.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 53.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 50.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 50.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.6
FF:10158-103A5 76 years, female 94.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.0
Samples: 4

Max nTPM: 20.5
Min nTPM: 16.8
Sample A Female 20.5
Sample B Female 16.8
Sample C Male 19.7
Sample D Male 19.1
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 23.0
Min nTPM: 20.1
Sample A Female 22.0
Sample B Female 20.9
Sample C Male 20.1
Sample D Male 23.0
Periaqueductal gray
nTPM: 19.8
Samples: 3

Max nTPM: 20.3
Min nTPM: 18.8
Sample B Female 20.3
Sample C Male 18.8
Sample D Male 20.2
Superior colliculi
nTPM: 18.0
Samples: 4

Max nTPM: 20.2
Min nTPM: 12.8
Sample A Female 18.6
Sample B Female 12.8
Sample C Male 20.2
Sample D Male 20.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 87.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.1
Samples: 4

Max nTPM: 90.0
Min nTPM: 85.5
Sample A Male 90.0
Sample B Male 85.5
Sample C Female 86.1
Sample D Female 86.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
70565252 Antisense, RP_050623_04_E12, Mouse strain C57BL/6J (56 days, male) 1.5

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