We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YWHAB is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
55.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
189.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
177.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
176.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
153.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
142.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
142.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
137.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
136.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
135.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
134.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
131.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
126.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
125.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
122.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
121.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
108.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
105.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
105.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
103.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
99.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
99.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
99.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
97.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
95.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
93.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
93.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
92.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
88.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
88.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
88.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
87.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
87.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
87.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
86.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
86.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
85.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
84.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
84.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
82.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
81.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
81.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
81.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
81.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
79.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
79.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
79.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
79.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
78.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
78.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
77.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
77.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
77.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
77.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
77.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
76.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
76.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
76.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
76.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
75.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
75.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
75.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
74.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
74.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
74.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
74.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
74.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
74.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
73.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
73.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
72.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
71.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
71.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
71.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
70.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
69.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
69.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
69.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
68.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
68.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
68.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
68.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
68.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
67.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
67.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
67.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
67.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
67.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
67.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
67.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
66.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
66.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
66.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
66.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
66.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
66.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
65.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
65.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
65.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
65.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
65.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
65.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
64.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
64.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
64.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
63.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
63.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
63.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
62.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
62.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
62.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
62.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
62.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
61.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
61.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
61.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
61.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
60.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
60.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
60.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
60.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
59.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
59.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
59.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
59.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
58.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
57.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
57.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
57.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
57.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
57.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
57.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
57.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
57.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
57.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
57.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
57.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
56.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
56.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
56.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
56.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
56.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
56.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
55.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
55.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
55.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
55.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
55.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
54.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
54.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
54.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
54.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
54.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
54.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
53.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
52.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
52.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
52.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
52.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
52.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
52.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
52.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
51.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
51.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
51.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
51.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
51.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
50.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
50.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
50.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
50.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
50.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
50.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
50.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
50.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
50.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
50.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
50.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
50.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
50.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
49.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
49.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
49.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
49.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
49.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
49.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
48.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
48.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
48.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
48.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
48.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
48.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
47.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
47.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
47.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
47.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
47.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
46.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
46.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
46.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
46.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
46.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
46.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
46.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
45.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
45.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
45.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
45.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
45.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
45.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
45.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
44.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
44.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
44.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
44.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
44.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
44.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
43.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
43.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
43.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
42.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
42.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
42.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
42.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
41.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
41.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
41.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
41.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
40.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
40.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
40.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
40.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
40.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
39.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
39.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
39.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
39.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
39.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
39.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
38.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
38.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
38.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
38.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
38.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
38.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
38.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
37.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
37.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
37.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
37.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
37.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
37.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
37.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
37.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
37.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
36.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
36.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
36.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
36.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
36.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
36.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
35.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
35.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
35.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
35.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
35.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
35.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
35.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
35.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
34.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
34.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
34.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
34.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
34.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
34.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
33.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
32.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
32.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
32.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
32.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
31.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
31.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
30.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
30.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
28.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
26.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
26.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
20.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YWHAB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.6
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
148.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
146.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
140.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
135.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
131.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
126.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
117.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
116.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
113.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
112.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
109.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
106.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
102.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
101.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
101.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
100.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
99.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
99.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
98.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
97.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
97.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
97.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
95.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
93.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
93.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
92.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
92.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
90.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
89.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
82.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
81.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
81.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
80.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
79.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
79.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
79.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
78.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
78.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
78.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
76.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
76.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
75.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
74.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
73.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
73.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
73.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
72.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
71.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
71.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
71.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
70.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
70.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
70.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
70.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
69.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
69.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
68.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
68.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
67.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
67.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
66.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
66.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
65.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
64.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
64.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
64.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
64.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
64.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
64.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
64.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
64.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
63.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
63.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
63.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
63.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
62.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
62.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
62.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
62.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
61.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
61.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
61.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
61.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
61.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
61.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
61.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
60.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
60.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
60.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
60.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
60.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
59.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
59.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
59.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
59.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
59.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
58.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
58.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
58.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
58.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
58.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
57.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
57.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
57.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
57.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
56.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
56.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
56.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
55.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
55.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
55.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
55.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
54.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
54.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
54.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
54.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
54.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
54.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
53.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
53.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
52.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
52.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
51.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
50.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
50.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
50.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
50.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
49.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
49.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
49.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
49.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
48.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
48.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
48.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
47.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
47.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
47.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
47.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
46.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
45.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
45.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
45.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
45.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
45.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
45.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
45.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
45.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
45.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
45.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
45.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
44.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
44.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
44.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
43.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
43.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
43.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
43.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
43.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
42.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
42.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
41.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
41.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
40.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
40.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
40.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
40.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
39.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
39.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
39.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
39.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
39.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
38.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
38.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
37.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
37.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
37.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
36.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
35.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
34.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
34.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
33.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
31.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
31.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
917
Tumor
0.5
685
Tumor
0.5
1013
Tumor
0.4
813
Tumor
0.3
478
Normal
0.3
881
Tumor
0.3
385
Tumor
0.3
743
Tumor
0.3
814
Normal
0.3
724
Normal
0.3
925
Tumor
0.3
713
Tumor
0.3
745
Tumor
0.3
135
Tumor
0.2
873
Tumor
0.2
817
Tumor
0.2
283
Tumor
0.2
978
Normal
0.2
311
Tumor
0.2
545
Tumor
0.2
131
Tumor
0.2
1015
Tumor
0.2
447
Tumor
0.2
641
Tumor
0.2
983
Tumor
0.2
211
Tumor
0.2
524
Normal
0.2
1031
Tumor
0.2
395
Tumor
0.2
916
Normal
0.2
192
Normal
0.2
444
Normal
0.2
527
Tumor
0.2
663
Tumor
0.2
975
Tumor
0.2
285
Tumor
0.2
557
Tumor
0.2
1025
Tumor
0.1
883
Tumor
0.1
921
Tumor
0.1
191
Tumor
0.1
715
Tumor
0.1
514
Normal
0.1
563
Tumor
0.1
943
Tumor
0.1
471
Tumor
0.1
984
Normal
0.1
224
Normal
0.1
498
Normal
0.1
884
Normal
0.1
536
Normal
0.1
617
Tumor
0.1
517
Tumor
0.1
852
Normal
0.1
1044
Normal
0.1
185
Tumor
0.1
877
Tumor
0.1
516
Normal
0.1
777
Tumor
0.1
913
Tumor
0.1
786
Normal
0.1
147
Tumor
0.1
1027
Tumor
0.1
497
Tumor
0.1
1043
Tumor
0.1
343
Tumor
0.1
912
Normal
0.1
1021
Tumor
0.1
425
Tumor
0.1
535
Tumor
0.1
868
Normal
0.1
528
Normal
0.1
671
Tumor
0.1
1042
Normal
0.1
416
Normal
0.1
492
Normal
0.1
963
Tumor
0.1
421
Tumor
0.1
212
Normal
0.1
515
Tumor
0.1
284
Normal
0.1
1045
Tumor
0.1
351
Tumor
0.1
737
Tumor
0.1
221
Tumor
0.1
467
Tumor
0.1
415
Tumor
0.1
427
Tumor
0.1
721
Tumor
0.1
411
Tumor
0.1
223
Tumor
0.1
866
Normal
0.1
815
Tumor
0.1
195
Tumor
0.1
823
Tumor
0.1
513
Tumor
0.1
363
Tumor
0.1
982
Normal
0.1
567
Tumor
0.1
1032
Normal
0.1
778
Normal
0.1
951
Tumor
0.1
375
Tumor
0.1
864
Normal
0.1
537
Tumor
0.1
188
Normal
0.1
538
Normal
0.1
851
Tumor
0.1
874
Normal
0.1
926
Normal
0.1
525
Tumor
0.1
126
Normal
0.1
331
Tumor
0.0
1022
Normal
0.0
268
Normal
0.0
523
Tumor
0.0
227
Tumor
0.0
686
Normal
0.0
445
Tumor
0.0
112
Tumor
0.0
857
Tumor
0.0
661
Tumor
0.0
573
Tumor
0.0
493
Tumor
0.0
716
Normal
0.0
1028
Normal
0.0
413
Tumor
0.0
1026
Normal
0.0
911
Tumor
0.0
1014
Normal
0.0
384
Normal
0.0
1016
Normal
0.0
976
Normal
0.0
386
Normal
0.0
882
Normal
0.0
785
Tumor
0.0
297
Tumor
0.0
483
Tumor
0.0
665
Tumor
0.0
217
Tumor
0.0
824
Normal
0.0
742
Normal
0.0
738
Normal
0.0
914
Normal
0.0
878
Normal
0.0
698
Normal
0.0
816
Normal
0.0
435
Tumor
0.0
966
Normal
0.0
145
Tumor
0.0
954
Normal
0.0
482
Normal
0.0
924
Normal
0.0
952
Normal
0.0
714
Normal
0.0
473
Tumor
0.0
171
Tumor
0.0
146
Normal
0.0
728
Normal
0.0
213
Tumor
0.0
727
Tumor
0.0
756
Normal
0.0
862
Normal
0.0
448
Normal
0.0
818
Normal
0.0
968
Normal
0.0
187
Tumor
0.0
286
Normal
0.0
723
Tumor
0.0
1041
Tumor
0.0
494
Normal
0.0
364
Normal
0.0
362
Normal
0.0
472
Normal
0.0
865
Tumor
0.0
491
Tumor
0.0
228
Normal
0.0
127
Tumor
0.0
918
Normal
0.0
956
Normal
0.0
434
Normal
0.0
461
Tumor
0.0
746
Normal
0.0
161
Tumor
0.0
977
Tumor
0.0
412
Normal
0.0
635
Tumor
0.0
863
Tumor
0.0
695
Tumor
0.0
474
Normal
0.0
366
Normal
0.0
1046
Normal
0.0
744
Normal
0.0
462
Normal
0.0
696
Normal
0.0
964
Normal
0.0
125
Tumor
0.0
484
Normal
-0.1
755
Tumor
-0.1
518
Normal
-0.1
368
Normal
-0.1
958
Normal
-0.1
257
Tumor
-0.1
861
Tumor
-0.1
328
Normal
-0.1
697
Tumor
-0.1
355
Tumor
-0.1
858
Normal
-0.1
481
Tumor
-0.1
455
Tumor
-0.1
332
Normal
-0.1
923
Tumor
-0.1
431
Tumor
-0.1
922
Normal
-0.1
722
Normal
-0.1
526
Normal
-0.1
271
Tumor
-0.1
214
Normal
-0.1
231
Tumor
-0.1
647
Tumor
-0.1
456
Normal
-0.1
394
Normal
-0.1
534
Normal
-0.1
553
Tumor
-0.1
628
Normal
-0.1
367
Tumor
-0.1
981
Tumor
-0.1
123
Tumor
-0.1
136
Normal
-0.1
488
Normal
-0.1
327
Tumor
-0.1
383
Tumor
-0.1
955
Tumor
-0.1
672
Normal
-0.1
262
Normal
-0.1
463
Tumor
-0.1
141
Tumor
-0.1
392
Normal
-0.1
666
Normal
-0.1
433
Tumor
-0.1
387
Tumor
-0.1
423
Tumor
-0.1
314
Normal
-0.1
533
Tumor
-0.1
365
Tumor
-0.1
344
Normal
-0.1
138
Normal
-0.1
312
Normal
-0.1
396
Normal
-0.1
957
Tumor
-0.1
356
Normal
-0.1
443
Tumor
-0.1
218
Normal
-0.1
558
Normal
-0.1
662
Normal
-0.1
124
Normal
-0.1
424
Normal
-0.1
867
Tumor
-0.1
354
Normal
-0.1
938
Normal
-0.1
357
Tumor
-0.1
616
Normal
-0.1
277
Tumor
-0.1
137
Tumor
-0.1
111
Normal
-0.1
352
Normal
-0.1
937
Tumor
-0.1
432
Normal
-0.1
664
Normal
-0.1
142
Normal
-0.1
278
Normal
-0.1
546
Normal
-0.1
915
Tumor
-0.1
618
Normal
-0.1
422
Normal
-0.1
944
Normal
-0.1
953
Tumor
-0.2
376
Normal
-0.2
571
Tumor
-0.2
627
Tumor
-0.2
113
Tumor
-0.2
642
Normal
-0.2
172
Normal
-0.2
196
Normal
-0.2
388
Normal
-0.2
487
Tumor
-0.2
272
Normal
-0.2
267
Tumor
-0.2
414
Normal
-0.2
313
Tumor
-0.2
358
Normal
-0.2
342
Normal
-0.2
114
Normal
-0.2
446
Normal
-0.2
162
Normal
-0.2
741
Tumor
-0.2
554
Normal
-0.2
361
Tumor
-0.2
574
Normal
-0.2
353
Tumor
-0.2
436
Normal
-0.2
341
Tumor
-0.2
451
Tumor
-0.2
393
Tumor
-0.2
648
Normal
-0.2
572
Normal
-0.2
148
Normal
-0.2
298
Normal
-0.2
428
Normal
-0.2
965
Tumor
-0.2
261
Tumor
-0.2
128
Normal
-0.2
186
Normal
-0.2
258
Normal
-0.2
132
Normal
-0.2
426
Normal
-0.2
452
Normal
-0.2
636
Normal
-0.2
222
Normal
-0.2
466
Normal
-0.2
468
Normal
-0.2
391
Tumor
-0.2
464
Normal
-0.3
967
Tumor
-0.3
564
Normal
-0.3
568
Normal
-0.3
615
Tumor
-0.3
477
Tumor
-0.3
465
Tumor
-0.3
232
Normal
-0.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
