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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NAB2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
40.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
33.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
23.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NAB2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
231
Samples
Sample
Description
TPM
DO23546
0 years, male, NA, stage:2, alive, 1050 days
43.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
35.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
391
Tumor
1.4
965
Tumor
1.0
956
Normal
0.9
388
Normal
0.9
944
Normal
0.8
957
Tumor
0.8
813
Tumor
0.7
574
Normal
0.7
661
Tumor
0.7
386
Normal
0.7
938
Normal
0.7
434
Normal
0.7
283
Tumor
0.6
258
Normal
0.5
671
Tumor
0.5
954
Normal
0.5
224
Normal
0.5
396
Normal
0.5
394
Normal
0.5
463
Tumor
0.5
432
Normal
0.5
721
Tumor
0.5
672
Normal
0.5
431
Tumor
0.5
145
Tumor
0.5
955
Tumor
0.5
967
Tumor
0.4
462
Normal
0.4
124
Normal
0.4
737
Tumor
0.4
963
Tumor
0.4
958
Normal
0.4
1016
Normal
0.4
921
Tumor
0.4
284
Normal
0.4
953
Tumor
0.4
257
Tumor
0.4
114
Normal
0.4
331
Tumor
0.4
146
Normal
0.4
262
Normal
0.4
261
Tumor
0.4
744
Normal
0.4
123
Tumor
0.3
482
Normal
0.3
951
Tumor
0.3
564
Normal
0.3
228
Normal
0.3
665
Tumor
0.3
572
Normal
0.3
1014
Normal
0.3
534
Normal
0.3
376
Normal
0.3
212
Normal
0.3
392
Normal
0.3
131
Tumor
0.3
814
Normal
0.3
444
Normal
0.3
286
Normal
0.3
332
Normal
0.3
446
Normal
0.3
125
Tumor
0.3
1042
Normal
0.3
568
Normal
0.3
362
Normal
0.3
472
Normal
0.3
135
Tumor
0.3
964
Normal
0.3
465
Tumor
0.3
366
Normal
0.3
723
Tumor
0.2
1022
Normal
0.2
662
Normal
0.2
524
Normal
0.2
384
Normal
0.2
436
Normal
0.2
976
Normal
0.2
743
Tumor
0.2
494
Normal
0.2
666
Normal
0.2
785
Tumor
0.2
445
Tumor
0.2
977
Tumor
0.2
554
Normal
0.2
387
Tumor
0.2
558
Normal
0.2
142
Normal
0.2
132
Normal
0.2
138
Normal
0.2
975
Tumor
0.2
492
Normal
0.2
742
Normal
0.2
914
Normal
0.2
428
Normal
0.2
535
Tumor
0.2
126
Normal
0.2
497
Tumor
0.2
686
Normal
0.2
563
Tumor
0.2
966
Normal
0.2
452
Normal
0.2
514
Normal
0.2
1032
Normal
0.2
516
Normal
0.2
231
Tumor
0.1
517
Tumor
0.1
271
Tumor
0.1
573
Tumor
0.1
393
Tumor
0.1
232
Normal
0.1
1026
Normal
0.1
456
Normal
0.1
881
Tumor
0.1
268
Normal
0.1
368
Normal
0.1
466
Normal
0.1
878
Normal
0.1
746
Normal
0.1
553
Tumor
0.1
128
Normal
0.1
698
Normal
0.1
716
Normal
0.1
188
Normal
0.1
474
Normal
0.1
968
Normal
0.1
546
Normal
0.1
112
Tumor
0.1
518
Normal
0.1
1028
Normal
0.1
981
Tumor
0.1
877
Tumor
0.1
468
Normal
0.1
285
Tumor
0.1
952
Normal
0.1
484
Normal
0.1
738
Normal
0.1
617
Tumor
0.1
943
Tumor
0.1
272
Normal
0.1
425
Tumor
0.1
267
Tumor
0.1
278
Normal
0.1
1044
Normal
0.1
1045
Tumor
0.1
185
Tumor
0.1
467
Tumor
0.1
536
Normal
0.1
696
Normal
0.1
298
Normal
0.1
478
Normal
0.1
148
Normal
0.1
493
Tumor
0.1
538
Normal
0.0
483
Tumor
0.0
984
Normal
0.0
277
Tumor
0.0
695
Tumor
0.0
727
Tumor
0.0
464
Normal
0.0
127
Tumor
0.0
172
Normal
0.0
447
Tumor
0.0
161
Tumor
0.0
722
Normal
0.0
488
Normal
0.0
413
Tumor
0.0
162
Normal
0.0
498
Normal
0.0
713
Tumor
0.0
528
Normal
0.0
443
Tumor
0.0
728
Normal
0.0
481
Tumor
0.0
433
Tumor
0.0
424
Normal
0.0
186
Normal
0.0
426
Normal
0.0
1046
Normal
0.0
647
Tumor
0.0
311
Tumor
0.0
1043
Tumor
0.0
884
Normal
0.0
664
Normal
0.0
136
Normal
0.0
978
Normal
0.0
365
Tumor
0.0
526
Normal
-0.1
435
Tumor
-0.1
187
Tumor
-0.1
385
Tumor
-0.1
395
Tumor
-0.1
1025
Tumor
-0.1
628
Normal
-0.1
414
Normal
-0.1
223
Tumor
-0.1
636
Normal
-0.1
982
Normal
-0.1
313
Tumor
-0.1
571
Tumor
-0.1
421
Tumor
-0.1
1041
Tumor
-0.1
111
Normal
-0.1
685
Tumor
-0.1
211
Tumor
-0.1
314
Normal
-0.1
227
Tumor
-0.1
312
Normal
-0.1
297
Tumor
-0.1
491
Tumor
-0.1
648
Normal
-0.1
715
Tumor
-0.1
883
Tumor
-0.1
448
Normal
-0.1
537
Tumor
-0.2
533
Tumor
-0.2
714
Normal
-0.2
567
Tumor
-0.2
1027
Tumor
-0.2
141
Tumor
-0.2
724
Normal
-0.2
924
Normal
-0.2
741
Tumor
-0.2
912
Normal
-0.2
455
Tumor
-0.2
451
Tumor
-0.2
778
Normal
-0.2
477
Tumor
-0.2
937
Tumor
-0.2
923
Tumor
-0.2
422
Normal
-0.2
461
Tumor
-0.2
925
Tumor
-0.3
361
Tumor
-0.3
383
Tumor
-0.3
113
Tumor
-0.3
697
Tumor
-0.3
147
Tumor
-0.3
525
Tumor
-0.3
557
Tumor
-0.3
487
Tumor
-0.3
1013
Tumor
-0.3
523
Tumor
-0.3
745
Tumor
-0.4
983
Tumor
-0.4
786
Normal
-0.4
756
Normal
-0.4
642
Normal
-0.4
618
Normal
-0.4
545
Tumor
-0.4
473
Tumor
-0.4
755
Tumor
-0.4
882
Normal
-0.4
527
Tumor
-0.4
911
Tumor
-0.4
423
Tumor
-0.4
663
Tumor
-0.4
1031
Tumor
-0.4
917
Tumor
-0.5
1021
Tumor
-0.5
777
Tumor
-0.5
427
Tumor
-0.5
137
Tumor
-0.5
367
Tumor
-0.5
375
Tumor
-0.5
171
Tumor
-0.5
641
Tumor
-0.6
513
Tumor
-0.6
616
Normal
-0.6
515
Tumor
-0.6
915
Tumor
-0.6
922
Normal
-0.6
916
Normal
-0.7
615
Tumor
-0.7
913
Tumor
-0.7
471
Tumor
-0.8
1015
Tumor
-0.8
918
Normal
-0.9
627
Tumor
-0.9
635
Tumor
-0.9
926
Normal
-1.4
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
857
Tumor
N/A
858
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
864
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
