MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:159.8 nTPM
HPA Brain:84.8 nTPM
GTEx:159.8 nTPM
FANTOM5:102.7 Scaled Tags Per Million
Pig:69.0 nTPM
Mouse:18.5 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 84.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.2
1870 Female, age 42, unknown 82.6
2019 Male, age 18, unknown 80.3
2411 Female, age 72, unknown 80.1
1830 Male, age 51, unknown 75.4
2828 Female, age 72, unknown 74.7
1833 Male, age 53, unknown 73.6
2586 Male, age 75, left hemisphere 70.6
2219 Male, age 76, both hemispheres 67.2
1827 Male, age 72, unknown 64.7
2666 Male, age 74, left hemisphere 62.8
Dorsal raphe nucleus
nTPM: 84.1
2298 Female, age 72, unknown 91.4
1828 Male, age 53, unknown 85.8
2750 Male, age 76, both hemispheres 85.4
2016 Female, age 72, unknown 79.0
2047 Male, age 72, unknown 78.8
Inferior colliculus
nTPM: 70.4
2097 Female, age 72, unknown 78.5
1848 Female, age 42, unknown 69.2
2849 Male, age 72, unknown 67.0
1890 Male, age 53, unknown 66.9
Median raphe nucleus
nTPM: 79.9
2220 Male, age 76, midline 79.9
Periaquaductal grey, anterior
nTPM: 75.4
2502 Female, age 75, unknown 82.6
1947 Male, age 18, unknown 75.6
1795 Male, age 51, unknown 68.0
Periaquaductal grey, dorsal
nTPM: 66.5
2850 Male, age 76, both hemispheres 76.0
1840 Male, age 53, unknown 69.0
2464 Female, age 72, unknown 64.9
1831 Male, age 72, unknown 56.0
Periaquaductal grey, lateral
nTPM: 71.9
2272 Male, age 74, both hemispheres 76.1
2140 Male, age 76, both hemispheres 73.6
2053 Male, age 18, unknown 65.9
Pretectal area
nTPM: 71.9
2273 Male, age 74, both hemispheres 84.2
2224 Female, age 72, unknown 82.7
2007 Male, age 72, unknown 79.8
1817 Female, age 42, unknown 77.8
2667 Female, age 75, unknown 75.6
2316 Male, age 76, right hemisphere 68.8
2825 Male, age 18, unknown 67.5
1815 Male, age 53, unknown 66.4
1944 Female, age 72, unknown 65.0
1816 Male, age 51, unknown 64.0
2407 Male, age 75, both hemispheres 59.3
Red nucleus
nTPM: 84.8
2227 Male, age 72, unknown 98.3
2503 Female, age 72, unknown 94.7
1821 Female, age 72, unknown 93.2
2769 Male, age 72, unknown 92.5
1865 Male, age 51, unknown 92.0
2785 Male, age 18, unknown 90.6
1904 Male, age 53, unknown 90.3
1954 Female, age 42, unknown 87.7
2823 Male, age 76, right hemisphere 79.8
2725 Female, age 75, unknown 76.1
2588 Male, age 74, left hemisphere 64.4
2584 Male, age 75, left hemisphere 58.5
Substantia nigra
nTPM: 71.5
1916 Female, age 42, unknown 90.7
1851 Male, age 51, unknown 86.6
2699 Male, age 18, unknown 74.7
1941 Male, age 53, unknown 71.3
1889 Female, age 72, unknown 70.2
2409 Female, age 72, unknown 67.5
2665 Male, age 74, both hemispheres 66.4
2241 Male, age 72, unknown 66.0
2590 Female, age 75, unknown 63.5
2583 Male, age 75, right hemisphere 57.9
Superior colliculus
nTPM: 71.2
1913 Female, age 42, unknown 84.9
1796 Male, age 53, unknown 78.4
2587 Male, age 74, left hemisphere 78.3
1995 Male, age 72, unknown 78.1
2668 Female, age 75, unknown 74.8
1839 Male, age 51, unknown 68.9
1895 Male, age 76, right hemisphere 65.2
2261 Male, age 18, unknown 64.6
2087 Female, age 72, unknown 64.3
2664 Male, age 75, both hemispheres 54.9
Ventral tegmental area
nTPM: 84.3
2410 Female, age 72, unknown 95.2
2223 Female, age 72, unknown 94.4
2218 Male, age 76, both hemispheres 83.4
1915 Female, age 42, unknown 82.9
1942 Male, age 51, unknown 76.7
2021 Male, age 53, unknown 73.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 159.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 159.8
Samples: 139

Max nTPM: 333.6
Min nTPM: 76.4
Std nTPM: 39.0
Median nTPM: 153.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 333.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 289.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 275.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 258.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 245.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 240.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 234.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 225.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 223.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 221.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 220.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 102.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.7
FF:10158-103A5 76 years, female 102.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 69.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 64.6
Samples: 4

Max nTPM: 75.9
Min nTPM: 56.5
Sample A Female 75.9
Sample B Female 56.5
Sample C Male 62.9
Sample D Male 62.9
Midbrain
nTPM: 69.0
Samples: 4

Max nTPM: 97.5
Min nTPM: 52.9
Sample A Female 97.5
Sample B Female 65.7
Sample C Male 52.9
Sample D Male 59.7
Periaqueductal gray
nTPM: 55.1
Samples: 3

Max nTPM: 60.4
Min nTPM: 51.2
Sample B Female 51.2
Sample C Male 60.4
Sample D Male 53.6
Superior colliculi
nTPM: 60.8
Samples: 4

Max nTPM: 77.5
Min nTPM: 48.1
Sample A Female 77.5
Sample B Female 48.1
Sample C Male 58.3
Sample D Male 59.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 21.6
Min nTPM: 16.5
Sample A Male 21.6
Sample B Male 16.5
Sample C Female 17.2
Sample D Female 18.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
69838600 Antisense, RP_050310_02_B08, Mouse strain C57BL/6J (56 days, male) 2.8
74819685 Antisense, RP_060315_02_H01, Mouse strain C57BL/6J (56 days, male) 0.1

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