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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRAD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
65.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRAD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.1
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
109.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
101.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
97.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
73.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
50.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
0.8
427
Tumor
0.8
741
Tumor
0.7
186
Normal
0.7
414
Normal
0.7
951
Tumor
0.6
428
Normal
0.6
422
Normal
0.5
188
Normal
0.5
635
Tumor
0.5
112
Tumor
0.4
424
Normal
0.4
911
Tumor
0.4
124
Normal
0.4
914
Normal
0.4
162
Normal
0.3
342
Normal
0.3
135
Tumor
0.3
746
Normal
0.3
816
Normal
0.3
172
Normal
0.3
148
Normal
0.3
426
Normal
0.3
393
Tumor
0.3
878
Normal
0.2
883
Tumor
0.2
464
Normal
0.2
738
Normal
0.2
956
Normal
0.2
777
Tumor
0.2
258
Normal
0.2
627
Tumor
0.2
387
Tumor
0.2
786
Normal
0.2
913
Tumor
0.2
421
Tumor
0.2
737
Tumor
0.2
272
Normal
0.2
344
Normal
0.2
123
Tumor
0.2
425
Tumor
0.2
952
Normal
0.1
814
Normal
0.1
778
Normal
0.1
813
Tumor
0.1
615
Tumor
0.1
137
Tumor
0.1
873
Tumor
0.1
434
Normal
0.1
114
Normal
0.1
1028
Normal
0.1
128
Normal
0.1
448
Normal
0.1
223
Tumor
0.1
881
Tumor
0.1
111
Normal
0.1
867
Tumor
0.1
785
Tumor
0.1
257
Tumor
0.1
185
Tumor
0.1
341
Tumor
0.1
563
Tumor
0.1
411
Tumor
0.1
1026
Normal
0.1
392
Normal
0.1
1045
Tumor
0.1
277
Tumor
0.1
567
Tumor
0.1
171
Tumor
0.1
977
Tumor
0.1
865
Tumor
0.1
433
Tumor
0.0
366
Normal
0.0
742
Normal
0.0
147
Tumor
0.0
574
Normal
0.0
391
Tumor
0.0
944
Normal
0.0
271
Tumor
0.0
362
Normal
0.0
882
Normal
0.0
1022
Normal
0.0
386
Normal
0.0
466
Normal
0.0
376
Normal
0.0
756
Normal
0.0
716
Normal
0.0
721
Tumor
0.0
138
Normal
0.0
132
Normal
0.0
141
Tumor
0.0
436
Normal
0.0
423
Tumor
0.0
462
Normal
0.0
343
Tumor
0.0
461
Tumor
0.0
743
Tumor
0.0
456
Normal
0.0
671
Tumor
0.0
361
Tumor
0.0
396
Normal
0.0
145
Tumor
0.0
161
Tumor
-0.1
1015
Tumor
-0.1
368
Normal
-0.1
365
Tumor
-0.1
452
Normal
-0.1
278
Normal
-0.1
884
Normal
-0.1
231
Tumor
-0.1
435
Tumor
-0.1
938
Normal
-0.1
465
Tumor
-0.1
312
Normal
-0.1
367
Tumor
-0.1
327
Tumor
-0.1
468
Normal
-0.1
823
Tumor
-0.1
298
Normal
-0.1
146
Normal
-0.1
557
Tumor
-0.1
724
Normal
-0.1
818
Normal
-0.1
874
Normal
-0.1
727
Tumor
-0.1
213
Tumor
-0.1
745
Tumor
-0.1
861
Tumor
-0.1
715
Tumor
-0.1
358
Normal
-0.1
755
Tumor
-0.1
573
Tumor
-0.1
1027
Tumor
-0.1
383
Tumor
-0.1
232
Normal
-0.1
127
Tumor
-0.1
126
Normal
-0.1
954
Normal
-0.1
663
Tumor
-0.1
857
Tumor
-0.1
517
Tumor
-0.1
698
Normal
-0.1
463
Tumor
-0.1
976
Normal
-0.1
446
Normal
-0.1
451
Tumor
-0.1
877
Tumor
-0.1
1044
Normal
-0.1
311
Tumor
-0.1
662
Normal
-0.1
1032
Normal
-0.2
824
Normal
-0.2
356
Normal
-0.2
921
Tumor
-0.2
187
Tumor
-0.2
672
Normal
-0.2
968
Normal
-0.2
981
Tumor
-0.2
354
Normal
-0.2
136
Normal
-0.2
515
Tumor
-0.2
858
Normal
-0.2
385
Tumor
-0.2
1043
Tumor
-0.2
262
Normal
-0.2
332
Normal
-0.2
228
Normal
-0.2
852
Normal
-0.2
261
Tumor
-0.2
432
Normal
-0.2
1025
Tumor
-0.2
494
Normal
-0.2
283
Tumor
-0.2
983
Tumor
-0.2
388
Normal
-0.2
455
Tumor
-0.2
477
Tumor
-0.2
375
Tumor
-0.2
817
Tumor
-0.2
467
Tumor
-0.2
395
Tumor
-0.3
384
Normal
-0.3
964
Normal
-0.3
572
Normal
-0.3
851
Tumor
-0.3
412
Normal
-0.3
222
Normal
-0.3
313
Tumor
-0.3
227
Tumor
-0.3
642
Normal
-0.3
268
Normal
-0.3
413
Tumor
-0.3
1016
Normal
-0.3
815
Tumor
-0.3
917
Tumor
-0.3
695
Tumor
-0.3
363
Tumor
-0.3
444
Normal
-0.3
445
Tumor
-0.3
975
Tumor
-0.3
571
Tumor
-0.3
364
Normal
-0.3
447
Tumor
-0.3
352
Normal
-0.3
474
Normal
-0.3
416
Normal
-0.3
744
Normal
-0.3
214
Normal
-0.3
297
Tumor
-0.3
664
Normal
-0.3
697
Tumor
-0.3
394
Normal
-0.3
314
Normal
-0.3
498
Normal
-0.3
353
Tumor
-0.3
284
Normal
-0.4
328
Normal
-0.4
924
Normal
-0.4
513
Tumor
-0.4
648
Normal
-0.4
916
Normal
-0.4
536
Normal
-0.4
286
Normal
-0.4
866
Normal
-0.4
982
Normal
-0.4
285
Tumor
-0.4
1042
Normal
-0.4
686
Normal
-0.4
713
Tumor
-0.4
217
Tumor
-0.4
958
Normal
-0.4
142
Normal
-0.4
1021
Tumor
-0.4
923
Tumor
-0.4
1031
Tumor
-0.4
224
Normal
-0.4
918
Normal
-0.4
564
Normal
-0.4
538
Normal
-0.4
912
Normal
-0.4
488
Normal
-0.4
722
Normal
-0.4
1046
Normal
-0.4
431
Tumor
-0.4
267
Tumor
-0.4
666
Normal
-0.4
641
Tumor
-0.4
516
Normal
-0.4
443
Tumor
-0.5
647
Tumor
-0.5
714
Normal
-0.5
966
Normal
-0.5
482
Normal
-0.5
525
Tumor
-0.5
661
Tumor
-0.5
723
Tumor
-0.5
922
Normal
-0.5
221
Tumor
-0.5
685
Tumor
-0.5
546
Normal
-0.5
618
Normal
-0.5
492
Normal
-0.5
1013
Tumor
-0.5
943
Tumor
-0.5
113
Tumor
-0.5
484
Normal
-0.5
528
Normal
-0.5
534
Normal
-0.5
518
Normal
-0.5
568
Normal
-0.5
481
Tumor
-0.5
925
Tumor
-0.5
472
Normal
-0.5
617
Tumor
-0.5
558
Normal
-0.5
955
Tumor
-0.5
131
Tumor
-0.5
862
Normal
-0.6
696
Normal
-0.6
331
Tumor
-0.6
483
Tumor
-0.6
523
Tumor
-0.6
728
Normal
-0.6
195
Tumor
-0.6
864
Normal
-0.6
192
Normal
-0.6
967
Tumor
-0.6
665
Tumor
-0.6
218
Normal
-0.6
357
Tumor
-0.6
491
Tumor
-0.6
196
Normal
-0.6
527
Tumor
-0.6
526
Normal
-0.6
553
Tumor
-0.6
984
Normal
-0.6
1041
Tumor
-0.6
514
Normal
-0.6
212
Normal
-0.6
863
Tumor
-0.6
636
Normal
-0.6
953
Tumor
-0.7
471
Tumor
-0.7
1014
Normal
-0.7
211
Tumor
-0.7
915
Tumor
-0.7
535
Tumor
-0.7
868
Normal
-0.7
926
Normal
-0.7
963
Tumor
-0.7
628
Normal
-0.7
937
Tumor
-0.7
478
Normal
-0.7
355
Tumor
-0.8
545
Tumor
-0.8
493
Tumor
-0.8
473
Tumor
-0.8
616
Normal
-0.8
497
Tumor
-0.8
351
Tumor
-0.8
524
Normal
-0.9
554
Normal
-0.9
533
Tumor
-0.9
191
Tumor
-0.9
487
Tumor
-0.9
957
Tumor
-1.0
965
Tumor
-1.0
537
Tumor
-1.0
978
Normal
-1.1
415
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
