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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMED3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
159.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
137.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
113.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
103.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
96.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
95.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
94.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
91.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
90.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
87.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
84.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
82.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
82.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
81.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
79.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
77.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
76.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
76.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
75.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
73.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
73.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
73.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
68.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
67.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
67.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
66.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
64.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
63.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
62.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
61.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
61.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
59.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
55.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
55.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
53.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
53.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
52.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
52.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
50.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
49.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
49.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
48.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
47.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
47.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
46.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
46.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
44.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
43.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
42.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
40.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
40.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
40.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
40.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
39.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
39.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
37.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
36.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
36.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
36.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
34.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
32.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
31.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
29.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
29.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
28.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
26.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMED3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.1
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
269.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
211.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
137.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
133.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
130.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
125.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
119.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
112.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
111.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
110.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
109.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
107.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
97.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
89.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
84.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
82.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
81.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
80.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
78.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
73.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
72.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
72.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
70.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
68.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
68.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
67.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
58.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
57.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
55.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
54.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
53.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
52.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
52.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
52.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
50.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
49.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
47.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
46.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
45.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
43.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
43.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
43.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
42.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
41.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
40.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
38.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
37.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
36.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.9
817
Tumor
1.5
447
Tumor
1.4
975
Tumor
1.4
363
Tumor
1.3
385
Tumor
1.2
697
Tumor
1.2
881
Tumor
1.1
877
Tumor
1.1
471
Tumor
1.1
1021
Tumor
1.1
661
Tumor
1.0
815
Tumor
1.0
713
Tumor
1.0
445
Tumor
1.0
671
Tumor
0.8
1025
Tumor
0.8
917
Tumor
0.7
283
Tumor
0.7
221
Tumor
0.6
967
Tumor
0.6
1043
Tumor
0.6
525
Tumor
0.6
497
Tumor
0.5
227
Tumor
0.5
911
Tumor
0.5
983
Tumor
0.5
823
Tumor
0.5
331
Tumor
0.5
545
Tumor
0.5
527
Tumor
0.4
211
Tumor
0.4
951
Tumor
0.4
443
Tumor
0.4
535
Tumor
0.4
963
Tumor
0.4
553
Tumor
0.4
965
Tumor
0.4
813
Tumor
0.3
1027
Tumor
0.3
536
Normal
0.3
231
Tumor
0.2
271
Tumor
0.2
223
Tumor
0.2
966
Normal
0.2
883
Tumor
0.2
135
Tumor
0.2
455
Tumor
0.2
478
Normal
0.2
351
Tumor
0.2
924
Normal
0.2
411
Tumor
0.1
943
Tumor
0.1
257
Tumor
0.1
685
Tumor
0.1
286
Normal
0.1
185
Tumor
0.1
863
Tumor
0.1
367
Tumor
0.1
956
Normal
0.1
916
Normal
0.1
737
Tumor
0.1
228
Normal
0.1
957
Tumor
0.1
355
Tumor
0.1
852
Normal
0.1
698
Normal
0.1
982
Normal
0.1
923
Tumor
0.1
524
Normal
0.1
925
Tumor
0.1
918
Normal
0.1
938
Normal
0.1
953
Tumor
0.1
976
Normal
0.1
188
Normal
0.0
516
Normal
0.0
851
Tumor
0.0
285
Tumor
0.0
387
Tumor
0.0
427
Tumor
0.0
284
Normal
0.0
778
Normal
0.0
186
Normal
0.0
214
Normal
0.0
195
Tumor
0.0
958
Normal
0.0
461
Tumor
0.0
415
Tumor
0.0
498
Normal
0.0
1031
Tumor
0.0
922
Normal
0.0
492
Normal
0.0
413
Tumor
0.0
515
Tumor
0.0
395
Tumor
0.0
526
Normal
0.0
393
Tumor
0.0
814
Normal
0.0
952
Normal
0.0
721
Tumor
-0.1
474
Normal
-0.1
937
Tumor
-0.1
444
Normal
-0.1
874
Normal
-0.1
217
Tumor
-0.1
1045
Tumor
-0.1
328
Normal
-0.1
212
Normal
-0.1
857
Tumor
-0.1
777
Tumor
-0.1
868
Normal
-0.1
554
Normal
-0.1
523
Tumor
-0.1
145
Tumor
-0.1
386
Normal
-0.1
412
Normal
-0.1
224
Normal
-0.1
635
Tumor
-0.1
162
Normal
-0.1
161
Tumor
-0.1
978
Normal
-0.1
433
Tumor
-0.1
517
Tumor
-0.1
473
Tumor
-0.1
472
Normal
-0.1
873
Tumor
-0.1
434
Normal
-0.1
662
Normal
-0.1
546
Normal
-0.1
1028
Normal
-0.1
172
Normal
-0.2
416
Normal
-0.2
494
Normal
-0.2
213
Tumor
-0.2
538
Normal
-0.2
488
Normal
-0.2
724
Normal
-0.2
258
Normal
-0.2
482
Normal
-0.2
696
Normal
-0.2
1044
Normal
-0.2
146
Normal
-0.2
926
Normal
-0.2
785
Tumor
-0.2
364
Normal
-0.2
528
Normal
-0.2
534
Normal
-0.2
297
Tumor
-0.2
421
Tumor
-0.2
456
Normal
-0.2
816
Normal
-0.2
327
Tumor
-0.2
114
Normal
-0.2
858
Normal
-0.2
968
Normal
-0.2
137
Tumor
-0.2
218
Normal
-0.2
356
Normal
-0.2
467
Tumor
-0.2
396
Normal
-0.2
141
Tumor
-0.2
964
Normal
-0.2
112
Tumor
-0.3
884
Normal
-0.3
746
Normal
-0.3
136
Normal
-0.3
448
Normal
-0.3
824
Normal
-0.3
432
Normal
-0.3
944
Normal
-0.3
222
Normal
-0.3
426
Normal
-0.3
727
Tumor
-0.3
981
Tumor
-0.3
984
Normal
-0.3
483
Tumor
-0.3
1042
Normal
-0.3
388
Normal
-0.3
272
Normal
-0.3
1026
Normal
-0.3
344
Normal
-0.3
878
Normal
-0.3
672
Normal
-0.3
862
Normal
-0.3
298
Normal
-0.3
142
Normal
-0.3
446
Normal
-0.3
138
Normal
-0.3
312
Normal
-0.3
394
Normal
-0.3
111
Normal
-0.3
124
Normal
-0.3
864
Normal
-0.4
262
Normal
-0.4
954
Normal
-0.4
342
Normal
-0.4
383
Tumor
-0.4
468
Normal
-0.4
268
Normal
-0.4
1014
Normal
-0.4
196
Normal
-0.4
187
Tumor
-0.4
436
Normal
-0.4
477
Tumor
-0.4
126
Normal
-0.4
921
Tumor
-0.4
955
Tumor
-0.4
663
Tumor
-0.4
487
Tumor
-0.4
277
Tumor
-0.4
514
Normal
-0.4
361
Tumor
-0.4
866
Normal
-0.4
818
Normal
-0.4
125
Tumor
-0.4
493
Tumor
-0.4
192
Normal
-0.4
314
Normal
-0.4
343
Tumor
-0.4
1022
Normal
-0.4
491
Tumor
-0.4
392
Normal
-0.4
362
Normal
-0.4
882
Normal
-0.4
1046
Normal
-0.4
484
Normal
-0.4
311
Tumor
-0.4
573
Tumor
-0.4
915
Tumor
-0.4
914
Normal
-0.4
913
Tumor
-0.4
647
Tumor
-0.4
1016
Normal
-0.4
715
Tumor
-0.4
745
Tumor
-0.4
428
Normal
-0.4
744
Normal
-0.4
148
Normal
-0.5
666
Normal
-0.5
451
Tumor
-0.5
728
Normal
-0.5
756
Normal
-0.5
368
Normal
-0.5
518
Normal
-0.5
462
Normal
-0.5
481
Tumor
-0.5
723
Tumor
-0.5
232
Normal
-0.5
533
Tumor
-0.5
1041
Tumor
-0.5
313
Tumor
-0.5
537
Tumor
-0.5
513
Tumor
-0.5
867
Tumor
-0.5
278
Normal
-0.5
354
Normal
-0.5
912
Normal
-0.5
755
Tumor
-0.5
341
Tumor
-0.5
557
Tumor
-0.5
664
Normal
-0.5
716
Normal
-0.5
738
Normal
-0.5
786
Normal
-0.5
384
Normal
-0.6
742
Normal
-0.6
132
Normal
-0.6
424
Normal
-0.6
686
Normal
-0.6
414
Normal
-0.6
423
Tumor
-0.6
1015
Tumor
-0.6
571
Tumor
-0.6
431
Tumor
-0.6
722
Normal
-0.6
648
Normal
-0.6
435
Tumor
-0.6
422
Normal
-0.6
466
Normal
-0.6
452
Normal
-0.6
261
Tumor
-0.6
366
Normal
-0.6
358
Normal
-0.7
123
Tumor
-0.7
391
Tumor
-0.7
563
Tumor
-0.7
463
Tumor
-0.7
425
Tumor
-0.7
464
Normal
-0.7
617
Tumor
-0.7
861
Tumor
-0.7
147
Tumor
-0.7
267
Tumor
-0.7
567
Tumor
-0.7
113
Tumor
-0.7
375
Tumor
-0.7
171
Tumor
-0.7
365
Tumor
-0.7
191
Tumor
-0.7
131
Tumor
-0.7
352
Normal
-0.8
127
Tumor
-0.8
128
Normal
-0.8
376
Normal
-0.8
615
Tumor
-0.8
642
Normal
-0.8
865
Tumor
-0.8
332
Normal
-0.8
714
Normal
-0.8
1013
Tumor
-0.8
353
Tumor
-0.8
357
Tumor
-0.9
618
Normal
-0.9
1032
Normal
-0.9
572
Normal
-0.9
977
Tumor
-0.9
574
Normal
-0.9
636
Normal
-1.0
695
Tumor
-1.0
568
Normal
-1.1
558
Normal
-1.1
627
Tumor
-1.1
564
Normal
-1.1
665
Tumor
-1.2
465
Tumor
-1.3
741
Tumor
-1.4
641
Tumor
-1.5
628
Normal
-1.6
616
Normal
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
