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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 29.6
2188
Female, age 91, both hemispheres
41.2
2301
Female, age 85, both hemispheres
28.3
2090
Male, age 80, both hemispheres
26.4
1984
Male, age 76, both hemispheres
22.5
Dorsal cochlear nucleus nTPM: 23.7
2187
Female, age 91, both hemispheres
26.9
2378
Male, age 80, both hemispheres
24.4
2058
Male, age 76, both hemispheres
22.4
2802
Male, age 74, right hemisphere
22.4
2370
Male, age 61, both hemispheres
22.3
Dorsal tegmental nucleus nTPM: 24.4
2358
Male, age 61, both hemispheres
27.7
2083
Male, age 80, both hemispheres
23.8
2326
Male, age 74, both hemispheres
23.2
1936
Male, age 76, left hemisphere
23.0
Dorsolateral tegmental area nTPM: 23.0
2751
Female, age 85, both hemispheres
26.6
2360
Male, age 74, both hemispheres
25.0
2654
Male, age 80, both hemispheres
23.2
2141
Male, age 76, both hemispheres
21.4
2337
Male, age 61, both hemispheres
18.8
Kolliker-Fuse nucleus nTPM: 27.0
2793
Female, age 91, left hemisphere
31.3
2315
Male, age 76, right hemisphere
25.7
2163
Male, age 80, both hemispheres
24.1
Lateral lemniscal nuclei nTPM: 24.8
2453
Male, age 74, right hemisphere
30.8
2320
Female, age 91, left hemisphere
26.1
2169
Male, age 76, both hemispheres
23.3
2746
Female, age 85, left hemisphere
23.3
2036
Male, age 80, both hemispheres
20.6
Lateral parabrachial nucleus nTPM: 22.9
2792
Male, age 76, both hemispheres
29.6
2013
Male, age 80, both hemispheres
23.1
2139
Female, age 85, right hemisphere
20.9
2790
Male, age 61, both hemispheres
17.8
Lateral vestibular nucleus nTPM: 24.5
2311
Male, age 80, both hemispheres
26.3
2184
Male, age 76, both hemispheres
22.6
Locus coeruleus nTPM: 19.4
2162
Male, age 80, both hemispheres
21.7
2317
Female, age 72, unknown
20.9
1980
Male, age 76, both hemispheres
20.3
2720
Male, age 74, both hemispheres
19.9
2788
Male, age 74, unknown
18.4
2014
Male, age 55, unknown
17.6
2123
Female, age 91, both hemispheres
17.4
Medial parabrachial nucleus nTPM: 23.8
2170
Female, age 91, both hemispheres
25.9
2463
Female, age 85, right hemisphere
25.5
2854
Male, age 80, both hemispheres
23.9
2156
Male, age 61, both hemispheres
22.9
2786
Male, age 76, both hemispheres
20.6
Medial periolivary nuclei nTPM: 24.9
2458
Female, age 91, both hemispheres
30.3
2081
Male, age 80, both hemispheres
26.1
2171
Female, age 85, both hemispheres
24.9
2063
Male, age 76, both hemispheres
21.7
2791
Male, age 74, right hemisphere
21.6
Motor facial nucleus nTPM: 25.6
2365
Male, age 74, right hemisphere
32.0
2697
Female, age 85, both hemispheres
28.9
2327
Male, age 80, both hemispheres
24.7
2062
Male, age 76, both hemispheres
23.1
2795
Female, age 91, both hemispheres
22.8
2126
Male, age 61, both hemispheres
22.3
Motor trigeminal nucleus nTPM: 23.6
2309
Male, age 76, both hemispheres
25.4
2079
Male, age 80, both hemispheres
24.9
2560
Male, age 74, both hemispheres
24.3
2321
Female, age 91, both hemispheres
22.8
2335
Male, age 61, both hemispheres
20.6
Nuclei of the trapezoid body nTPM: 23.3
2368
Female, age 91, both hemispheres
27.0
2166
Male, age 80, both hemispheres
26.7
1983
Male, age 76, both hemispheres
22.5
2735
Female, age 85, both hemispheres
21.1
2159
Male, age 61, both hemispheres
19.3
Nucleus raphe magnus nTPM: 24.3
2455
Male, age 74, both hemispheres
29.7
2328
Male, age 80, both hemispheres
24.4
2160
Male, age 61, both hemispheres
23.4
2172
Female, age 85, both hemispheres
23.1
2459
Female, age 91, both hemispheres
22.9
2051
Male, age 76, both hemispheres
22.1
Paramedian reticular nucleus nTPM: 22.9
2057
Male, age 80, both hemispheres
25.7
2052
Male, age 76, both hemispheres
24.8
2050
Female, age 85, both hemispheres
22.4
2313
Male, age 61, both hemispheres
18.6
Pedunculopontine tegmental nucleus nTPM: 21.7
1921
Female, age 85, both hemispheres
22.7
2334
Male, age 80, both hemispheres
22.6
2338
Male, age 61, both hemispheres
20.0
Pontine nuclei nTPM: 23.9
2319
Female, age 91, both hemispheres
31.3
2454
Male, age 74, left hemisphere
28.7
2115
Male, age 80, left hemisphere
24.8
2109
Female, age 72, unknown
23.9
1968
Male, age 76, left hemisphere
23.0
1863
Male, age 55, unknown
21.7
2787
Female, age 85, both hemispheres
19.7
2727
Male, age 61, right hemisphere
17.7
Pontine raphe nucleus nTPM: 23.4
2853
Male, age 76, midline
23.8
2122
Female, age 85, midline
23.1
Posteroventral cochlear nucleus nTPM: 27.0
2135
Female, age 91, both hemispheres
35.4
2341
Male, age 80, both hemispheres
29.7
2371
Male, age 61, both hemispheres
26.1
2070
Male, age 76, both hemispheres
22.4
2752
Female, age 85, both hemispheres
21.5
Principal sensory trigeminal nucleus nTPM: 24.6
2367
Female, age 91, left hemisphere
28.4
2158
Male, age 61, both hemispheres
25.4
2324
Male, age 76, both hemispheres
22.7
2008
Male, age 80, left hemisphere
21.9
Reticular pontine nucleus, caudal nTPM: 26.3
2457
Female, age 91, both hemispheres
30.4
2092
Male, age 76, both hemispheres
25.4
2559
Male, age 74, both hemispheres
25.1
2332
Male, age 80, right hemisphere
24.6
Reticular pontine nucleus, oral nTPM: 27.2
2366
Female, age 91, both hemispheres
42.0
2167
Male, age 76, both hemispheres
25.5
2012
Female, age 85, both hemispheres
23.2
1939
Male, age 80, both hemispheres
23.0
2361
Male, age 74, both hemispheres
22.5
Reticulotegmental nucleus nTPM: 22.8
2452
Male, age 74, both hemispheres
24.3
2322
Female, age 91, both hemispheres
22.9
2325
Male, age 76, both hemispheres
22.3
2333
Male, age 80, both hemispheres
21.6
Spinal trigeminal nucleus, oral nTPM: 21.8
2164
Male, age 80, both hemispheres
23.7
1978
Male, age 76, both hemispheres
22.0
2737
Female, age 85, both hemispheres
19.8
Subcoeruleus area nTPM: 25.2
2369
Female, age 85, left hemisphere
29.3
2089
Male, age 76, left hemisphere
26.3
2451
Male, age 74, both hemispheres
24.8
1958
Male, age 80, both hemispheres
24.4
2323
Female, age 91, left hemisphere
21.4
Superior olive nTPM: 25.9
2364
Male, age 74, right hemisphere
30.3
2020
Male, age 76, both hemispheres
26.2
2561
Female, age 91, both hemispheres
25.5
2329
Male, age 80, right hemisphere
24.9
1875
Female, age 85, both hemispheres
22.8
Ventral periolivary nuclei nTPM: 24.8
2023
Male, age 76, both hemispheres
26.1
2165
Male, age 80, both hemispheres
25.9
2794
Female, age 91, left hemisphere
25.6
2130
Female, age 85, both hemispheres
21.7
Ventrolateral tegmental area, A5 NE cell group nTPM: 24.7
2456
Female, age 91, both hemispheres
26.8
1959
Male, age 76, both hemispheres
26.7
2449
Male, age 74, both hemispheres
26.3
2161
Male, age 80, both hemispheres
23.1
2840
Female, age 85, both hemispheres
23.1
2359
Male, age 61, both hemispheres
22.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
