We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.9
Sample id
Sample description
nTPM
Amygdala nTPM: 20.4
2514
Male, age 75, right hemisphere
22.7
2517
Female, age 94, left hemisphere
22.2
2814
Male, age 76, right hemisphere
20.1
1987
Female, age 91, left hemisphere
19.3
2695
Female, age 67, right hemisphere
17.6
Basal amygdala nTPM: 19.7
2243
Female, age 91, right hemisphere
20.7
2609
Male, age 75, right hemisphere
20.7
2827
Female, age 67, right hemisphere
19.6
2685
Female, age 94, left hemisphere
19.4
1955
Male, age 76, both hemispheres
19.2
2110
Male, age 80, left hemisphere
18.5
Central amygdala nTPM: 21.2
2239
Male, age 80, left hemisphere
22.6
2701
Female, age 91, right hemisphere
22.2
2515
Male, age 75, right hemisphere
21.9
1905
Male, age 76, both hemispheres
20.4
2826
Female, age 94, left hemisphere
18.9
Corticomedial amygdala nTPM: 21.2
2535
Female, age 67, right hemisphere
25.2
2429
Female, age 94, left hemisphere
24.2
2428
Male, age 75, right hemisphere
21.1
2240
Male, age 76, both hemispheres
19.7
2242
Female, age 91, right hemisphere
19.7
2829
Male, age 80, left hemisphere
17.3
Lateral amygdala nTPM: 21.9
2534
Female, age 94, left hemisphere
26.2
2830
Female, age 67, right hemisphere
23.6
2255
Female, age 91, right hemisphere
21.1
2516
Male, age 75, right hemisphere
20.5
1883
Male, age 76, both hemispheres
20.3
2256
Male, age 80, left hemisphere
19.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 9.3
Samples: 152
Max nTPM: 16.0
Min nTPM: 5.0
Std nTPM: 2.0
Median nTPM: 8.9
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
16.0
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
15.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
14.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
14.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
14.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
13.7
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
13.4
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
13.3
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
12.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
12.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
12.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
12.5
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
12.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
12.1
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
12.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
11.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
11.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
11.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
11.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
11.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
11.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
11.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
11.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
11.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
11.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
11.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
11.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
11.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
10.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
10.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
10.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
10.8
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
10.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
10.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
10.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
10.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
10.6
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
10.5
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
10.4
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
10.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
10.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
10.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
10.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
10.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
10.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
10.1
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
10.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
10.1
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
10.0
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
10.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
9.9
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
9.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
9.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
9.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
9.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
9.7
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
9.7
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
9.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
9.7
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
9.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
9.6
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
9.5
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
9.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
9.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
9.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
9.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
9.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
9.4
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
9.4
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
9.4
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
9.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
9.4
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
9.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
9.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
9.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
8.9
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
8.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
8.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
8.8
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
8.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
8.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
8.7
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
8.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
8.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
8.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
8.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
8.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
8.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
8.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
8.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
8.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
8.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
8.4
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
8.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
8.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
8.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
8.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
8.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
8.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
8.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
8.1
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
8.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
8.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
8.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
8.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
8.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
8.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
8.0
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
8.0
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
8.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
8.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
7.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
7.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
7.9
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
7.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
7.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
7.8
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
7.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
7.7
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
7.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
7.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
7.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
7.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
7.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
7.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
7.4
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
7.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
7.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
7.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
7.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
7.2
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
7.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
7.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
7.1
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
7.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
7.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
7.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
6.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
6.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
6.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
6.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
6.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
6.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
6.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
6.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
6.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
6.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
6.0
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
5.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
5.4
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
5.1
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
5.0
Show allShow less
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
