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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Medium
Inner plexiform layer:
Medium
Limiting membrane:
Not detected
Nerve fiber layer:
High
Outer plexiform layer:
Medium
Photoreceptor cells:
Not detected
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
527.4
nTPM
GTEx:
527.4
nTPM
FANTOM5:
277.9
Scaled Tags Per Million
Pig:
141.4
nTPM
Mouse:
26.1
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA017203
Pigment epithelial cells
Not detected
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
Medium
Inner nuclear layer
Medium
Inner plexiform layer
Medium
Ganglion cells
Not detected
Nerve fiber layer
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
527.4
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 527.4
Samples: 105
Max nTPM: 1112.0
Min nTPM: 88.5
Std nTPM: 203.5
Median nTPM:
452_1
88 years, female
1112.0
173_1
67 years, male
964.8
351_1
91 years, male
946.1
384_1
83 years, male
933.2
379_1
60 years, male
919.5
218_1
71 years, female
892.4
506_1
65 years, male
890.1
322_1
76 years, male
888.1
295_1
61 years, female
847.0
163_1
78 years, male
793.0
377_1
82 years, female
791.9
376_1
75 years, female
786.4
386_1
76 years, male
778.6
17_1
71 years, male
766.2
137_1
83 years, male
762.4
177_1
74 years, male
728.9
189_1
76 years, male
724.6
353_1
82 years, female
720.3
4_1
88 years, female
697.2
317_1
60 years, male
695.9
319_1
81 years, male
671.1
145_1
84 years, male
666.2
41_1
94 years, female
660.1
243_1
75 years, male
654.2
264_1
73 years, female
651.9
356_1
87 years, female
642.4
447_1
81 years, male
634.2
406_1
79 years, male
625.6
394_1
75 years, female
623.5
120_1
70 years, female
618.0
321_1
62 years, female
617.1
349_1
83 years, male
615.5
316_1
62 years, male
614.7
503_1
68 years, male
604.1
389_1
86 years, female
602.0
354_1
81 years, female
591.3
314_1
67 years, male
587.8
350_1
84 years, female
582.0
251_1
78 years, male
578.8
518_1
75 years, female
575.9
292_1
71 years, male
572.9
347_1
72 years, male
570.1
35_1
74 years, female
545.4
18_1
88 years, male
544.9
320_1
89 years, female
544.4
404_1
82 years, female
543.9
318_1
68 years, male
543.3
315_1
62 years, female
538.6
348_1
84 years, male
533.1
375_1
74 years, female
531.8
352_1
62 years, male
528.3
237_1
82 years, male
528.0
291_1
76 years, male
527.8
405_1
91 years, male
519.0
293_1
68 years, female
516.4
308_1
70 years, female
510.6
246_1
77 years, male
510.2
288_1
66 years, female
506.3
139_1
64 years, female
502.3
311_1
78 years, male
493.0
526_1
61 years, male
491.6
501_1
88 years, male
490.7
335_1
73 years, female
485.9
6_1
73 years, female
483.3
307_1
66 years, female
483.2
115_1
83 years, male
482.5
109_1
81 years, female
480.7
425_1
59 years, female
478.9
480_1
63 years, male
464.8
172_1
72 years, female
462.7
517_1
88 years, male
460.5
99_1
64 years, male
449.4
126_1
63 years, male
447.8
396_1
62 years, male
438.4
265_1
87 years, male
435.3
286_1
68 years, female
433.0
2_1
77 years, female
429.8
266_1
85 years, male
420.5
468_1
89 years, male
414.3
42_1
85 years, male
402.2
153_1
70 years, female
393.6
254_1
77 years, female
392.9
355_1
70 years, female
387.6
495_1
57 years, female
370.4
499_1
55 years, female
367.5
217_1
76 years, male
324.7
119_1
70 years, female
323.6
142_1
61 years, female
321.8
229_1
69 years, female
310.9
324_1
76 years, male
306.9
117_1
61 years, male
306.2
313_1
79 years, female
304.9
9_1
66 years, female
278.2
81_1
67 years, male
263.0
89_1
63 years, male
259.6
414_1
84 years, female
241.8
43_1
64 years, female
228.0
415_1
77 years, female
209.3
162_1
79 years, female
208.1
32_1
67 years, male
174.6
466_1
57 years, female
153.2
149_1
88 years, male
135.6
413_1
59 years, female
117.7
491_1
89 years, female
109.1
490_1
67 years, female
88.5
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.