MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.2 nTPM
HPA Brain:116.7 nTPM
GTEx:65.2 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:275.3 nTPM
Mouse:0.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 116.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.7
2586 Male, age 75, left hemisphere 101.2
2411 Female, age 72, unknown 63.0
1827 Male, age 72, unknown 62.1
1833 Male, age 53, unknown 49.6
2666 Male, age 74, left hemisphere 42.7
1830 Male, age 51, unknown 36.7
2828 Female, age 72, unknown 33.9
1870 Female, age 42, unknown 27.4
2019 Male, age 18, unknown 26.2
2219 Male, age 76, both hemispheres 24.2
Dorsal raphe nucleus
nTPM: 71.7
2298 Female, age 72, unknown 120.0
2047 Male, age 72, unknown 94.3
1828 Male, age 53, unknown 60.8
2016 Female, age 72, unknown 48.2
2750 Male, age 76, both hemispheres 35.4
Inferior colliculus
nTPM: 116.7
2849 Male, age 72, unknown 149.1
1848 Female, age 42, unknown 142.4
2097 Female, age 72, unknown 111.7
1890 Male, age 53, unknown 63.7
Median raphe nucleus
nTPM: 26.6
2220 Male, age 76, midline 26.6
Periaquaductal grey, anterior
nTPM: 54.2
2502 Female, age 75, unknown 102.5
1947 Male, age 18, unknown 30.3
1795 Male, age 51, unknown 29.8
Periaquaductal grey, dorsal
nTPM: 72.1
2464 Female, age 72, unknown 109.9
1840 Male, age 53, unknown 81.7
2850 Male, age 76, both hemispheres 59.9
1831 Male, age 72, unknown 36.8
Periaquaductal grey, lateral
nTPM: 44.6
2053 Male, age 18, unknown 61.3
2140 Male, age 76, both hemispheres 44.3
2272 Male, age 74, both hemispheres 28.3
Pretectal area
nTPM: 34.9
2825 Male, age 18, unknown 69.4
2316 Male, age 76, right hemisphere 54.2
1817 Female, age 42, unknown 41.0
1816 Male, age 51, unknown 39.2
2007 Male, age 72, unknown 36.6
2667 Female, age 75, unknown 32.7
1944 Female, age 72, unknown 30.6
2273 Male, age 74, both hemispheres 24.8
2224 Female, age 72, unknown 22.2
1815 Male, age 53, unknown 19.1
2407 Male, age 75, both hemispheres 14.6
Red nucleus
nTPM: 65.3
2725 Female, age 75, unknown 112.0
2769 Male, age 72, unknown 84.4
2588 Male, age 74, left hemisphere 83.5
2823 Male, age 76, right hemisphere 81.6
2227 Male, age 72, unknown 79.9
1954 Female, age 42, unknown 79.3
1821 Female, age 72, unknown 66.5
2503 Female, age 72, unknown 63.5
1865 Male, age 51, unknown 51.7
1904 Male, age 53, unknown 38.6
2785 Male, age 18, unknown 33.3
2584 Male, age 75, left hemisphere 9.9
Substantia nigra
nTPM: 17.9
1889 Female, age 72, unknown 44.2
1941 Male, age 53, unknown 40.0
1916 Female, age 42, unknown 27.0
2665 Male, age 74, both hemispheres 21.4
2699 Male, age 18, unknown 17.7
1851 Male, age 51, unknown 8.4
2241 Male, age 72, unknown 7.2
2590 Female, age 75, unknown 5.7
2583 Male, age 75, right hemisphere 4.8
2409 Female, age 72, unknown 2.9
Superior colliculus
nTPM: 45.9
1895 Male, age 76, right hemisphere 132.8
2587 Male, age 74, left hemisphere 106.4
1839 Male, age 51, unknown 56.9
1796 Male, age 53, unknown 37.4
2261 Male, age 18, unknown 32.5
2087 Female, age 72, unknown 31.3
2664 Male, age 75, both hemispheres 21.0
2668 Female, age 75, unknown 15.0
1995 Male, age 72, unknown 14.7
1913 Female, age 42, unknown 11.3
Ventral tegmental area
nTPM: 27.5
2410 Female, age 72, unknown 39.6
1942 Male, age 51, unknown 35.8
2218 Male, age 76, both hemispheres 31.9
2021 Male, age 53, unknown 24.6
1915 Female, age 42, unknown 17.2
2223 Female, age 72, unknown 15.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.2
Samples: 139

Max nTPM: 342.5
Min nTPM: 1.1
Std nTPM: 63.2
Median nTPM: 42.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 342.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 292.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 247.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 241.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 219.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 202.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 192.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 180.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 174.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 170.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 168.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 275.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.5
Samples: 4

Max nTPM: 81.4
Min nTPM: 8.8
Sample A Female 13.8
Sample B Female 81.4
Sample C Male 8.8
Sample D Male 10.1
Midbrain
nTPM: 10.6
Samples: 4

Max nTPM: 19.7
Min nTPM: 4.3
Sample A Female 19.7
Sample B Female 13.5
Sample C Male 4.8
Sample D Male 4.3
Periaqueductal gray
nTPM: 11.2
Samples: 3

Max nTPM: 13.1
Min nTPM: 9.7
Sample B Female 9.7
Sample C Male 10.7
Sample D Male 13.1
Superior colliculi
nTPM: 275.3
Samples: 4

Max nTPM: 1030.9
Min nTPM: 6.1
Sample A Female 51.2
Sample B Female 1030.9
Sample C Male 6.1
Sample D Male 12.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.4
Sample A Male 0.6
Sample B Male 0.7
Sample C Female 1.3
Sample D Female 0.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
1179 Antisense, RP_Baylor_102702, Mouse strain C57BL/6J (56 days, male) 0.0
1180 Antisense, RP_Baylor_102702, Mouse strain C57BL/6J (56 days, male) 0.0

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