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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SGPL1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
66.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
31.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SGPL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
32.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
981
Tumor
1.1
685
Tumor
1.0
915
Tumor
0.9
755
Tumor
0.9
911
Tumor
0.8
1027
Tumor
0.8
715
Tumor
0.7
815
Tumor
0.7
741
Tumor
0.7
1043
Tumor
0.6
861
Tumor
0.6
616
Normal
0.6
955
Tumor
0.5
648
Normal
0.5
314
Normal
0.5
636
Normal
0.5
128
Normal
0.5
1022
Normal
0.5
851
Tumor
0.4
944
Normal
0.4
278
Normal
0.4
1032
Normal
0.4
1028
Normal
0.4
312
Normal
0.4
448
Normal
0.4
1025
Tumor
0.4
862
Normal
0.4
414
Normal
0.4
435
Tumor
0.4
867
Tumor
0.4
958
Normal
0.4
494
Normal
0.4
952
Normal
0.4
866
Normal
0.4
452
Normal
0.4
742
Normal
0.4
968
Normal
0.4
628
Normal
0.4
864
Normal
0.4
714
Normal
0.4
422
Normal
0.4
332
Normal
0.4
954
Normal
0.4
978
Normal
0.4
356
Normal
0.4
147
Tumor
0.3
618
Normal
0.3
466
Normal
0.3
745
Tumor
0.3
615
Tumor
0.3
416
Normal
0.3
912
Normal
0.3
746
Normal
0.3
1014
Normal
0.3
481
Tumor
0.3
868
Normal
0.3
1046
Normal
0.3
696
Normal
0.3
451
Tumor
0.3
918
Normal
0.3
938
Normal
0.3
528
Normal
0.3
127
Tumor
0.3
572
Normal
0.3
462
Normal
0.3
172
Normal
0.3
484
Normal
0.3
728
Normal
0.3
231
Tumor
0.3
882
Normal
0.3
554
Normal
0.3
1044
Normal
0.3
778
Normal
0.3
132
Normal
0.3
916
Normal
0.3
534
Normal
0.3
662
Normal
0.3
431
Tumor
0.3
514
Normal
0.3
136
Normal
0.3
1021
Tumor
0.3
424
Normal
0.3
286
Normal
0.3
922
Normal
0.3
412
Normal
0.3
558
Normal
0.3
123
Tumor
0.3
661
Tumor
0.3
984
Normal
0.3
878
Normal
0.3
926
Normal
0.3
114
Normal
0.3
222
Normal
0.3
284
Normal
0.3
426
Normal
0.3
385
Tumor
0.3
686
Normal
0.3
553
Tumor
0.3
956
Normal
0.3
354
Normal
0.3
982
Normal
0.2
148
Normal
0.2
214
Normal
0.2
966
Normal
0.2
195
Tumor
0.2
213
Tumor
0.2
358
Normal
0.2
212
Normal
0.2
171
Tumor
0.2
228
Normal
0.2
518
Normal
0.2
257
Tumor
0.2
142
Normal
0.2
428
Normal
0.2
852
Normal
0.2
271
Tumor
0.2
488
Normal
0.2
568
Normal
0.2
964
Normal
0.2
111
Normal
0.2
744
Normal
0.2
723
Tumor
0.2
464
Normal
0.2
738
Normal
0.2
698
Normal
0.2
786
Normal
0.2
388
Normal
0.2
298
Normal
0.2
362
Normal
0.2
564
Normal
0.2
474
Normal
0.2
722
Normal
0.2
145
Tumor
0.2
272
Normal
0.2
874
Normal
0.2
196
Normal
0.2
824
Normal
0.2
482
Normal
0.2
884
Normal
0.2
716
Normal
0.2
258
Normal
0.2
188
Normal
0.2
526
Normal
0.2
261
Tumor
0.2
642
Normal
0.2
538
Normal
0.2
524
Normal
0.2
785
Tumor
0.2
342
Normal
0.2
262
Normal
0.2
924
Normal
0.2
976
Normal
0.2
126
Normal
0.2
468
Normal
0.2
756
Normal
0.2
138
Normal
0.1
268
Normal
0.1
546
Normal
0.1
1042
Normal
0.1
224
Normal
0.1
376
Normal
0.1
341
Tumor
0.1
665
Tumor
0.1
921
Tumor
0.1
191
Tumor
0.1
477
Tumor
0.1
392
Normal
0.1
328
Normal
0.1
557
Tumor
0.1
232
Normal
0.1
211
Tumor
0.1
816
Normal
0.1
1016
Normal
0.1
478
Normal
0.1
574
Normal
0.1
1026
Normal
0.1
447
Tumor
0.1
364
Normal
0.1
858
Normal
0.1
436
Normal
0.1
421
Tumor
0.1
857
Tumor
0.1
455
Tumor
0.1
664
Normal
0.1
536
Normal
0.1
516
Normal
0.1
914
Normal
0.1
1031
Tumor
0.1
818
Normal
0.1
353
Tumor
0.1
368
Normal
0.1
456
Normal
0.1
492
Normal
0.1
873
Tumor
0.0
517
Tumor
0.0
124
Normal
0.0
881
Tumor
0.0
432
Normal
0.0
125
Tumor
0.0
666
Normal
0.0
472
Normal
0.0
445
Tumor
0.0
218
Normal
0.0
331
Tumor
0.0
535
Tumor
0.0
953
Tumor
0.0
186
Normal
0.0
1041
Tumor
0.0
387
Tumor
0.0
146
Normal
0.0
366
Normal
0.0
446
Normal
0.0
396
Normal
0.0
352
Normal
0.0
113
Tumor
0.0
413
Tumor
0.0
415
Tumor
0.0
311
Tumor
0.0
977
Tumor
0.0
394
Normal
0.0
533
Tumor
0.0
963
Tumor
0.0
361
Tumor
0.0
217
Tumor
0.0
721
Tumor
0.0
351
Tumor
0.0
386
Normal
0.0
344
Normal
0.0
444
Normal
0.0
672
Normal
0.0
187
Tumor
0.0
221
Tumor
-0.1
434
Normal
-0.1
567
Tumor
-0.1
975
Tumor
-0.1
327
Tumor
-0.1
537
Tumor
-0.1
724
Normal
-0.1
471
Tumor
-0.1
493
Tumor
-0.1
433
Tumor
-0.1
384
Normal
-0.1
617
Tumor
-0.1
917
Tumor
-0.1
491
Tumor
-0.1
135
Tumor
-0.1
297
Tumor
-0.1
727
Tumor
-0.1
713
Tumor
-0.1
283
Tumor
-0.2
697
Tumor
-0.2
467
Tumor
-0.2
192
Normal
-0.2
523
Tumor
-0.2
695
Tumor
-0.2
363
Tumor
-0.2
498
Normal
-0.2
277
Tumor
-0.2
343
Tumor
-0.2
641
Tumor
-0.2
365
Tumor
-0.2
823
Tumor
-0.2
813
Tumor
-0.2
185
Tumor
-0.2
983
Tumor
-0.2
814
Normal
-0.2
465
Tumor
-0.3
883
Tumor
-0.3
141
Tumor
-0.3
162
Normal
-0.3
965
Tumor
-0.3
635
Tumor
-0.3
423
Tumor
-0.3
817
Tumor
-0.3
395
Tumor
-0.3
483
Tumor
-0.3
877
Tumor
-0.3
223
Tumor
-0.3
285
Tumor
-0.3
923
Tumor
-0.3
563
Tumor
-0.3
1015
Tumor
-0.3
1045
Tumor
-0.3
925
Tumor
-0.3
112
Tumor
-0.3
937
Tumor
-0.3
355
Tumor
-0.3
391
Tumor
-0.3
443
Tumor
-0.3
737
Tumor
-0.3
367
Tumor
-0.3
525
Tumor
-0.4
137
Tumor
-0.4
463
Tumor
-0.4
267
Tumor
-0.4
951
Tumor
-0.4
671
Tumor
-0.4
227
Tumor
-0.4
573
Tumor
-0.4
473
Tumor
-0.5
461
Tumor
-0.5
943
Tumor
-0.5
357
Tumor
-0.5
313
Tumor
-0.5
427
Tumor
-0.5
131
Tumor
-0.5
967
Tumor
-0.5
777
Tumor
-0.5
571
Tumor
-0.6
527
Tumor
-0.6
497
Tumor
-0.6
913
Tumor
-0.6
375
Tumor
-0.6
863
Tumor
-0.6
383
Tumor
-0.6
647
Tumor
-0.6
513
Tumor
-0.7
411
Tumor
-0.7
161
Tumor
-0.8
515
Tumor
-0.8
627
Tumor
-0.8
957
Tumor
-0.8
545
Tumor
-0.8
487
Tumor
-0.8
663
Tumor
-0.9
425
Tumor
-0.9
393
Tumor
-0.9
865
Tumor
-1.0
1013
Tumor
-1.1
743
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
