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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
API5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
57.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
45.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
45.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
43.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
43.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
33.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
29.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
27.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
API5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.5
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
41.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
38.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
37.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
36.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
36.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
35.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
33.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
32.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
31.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
30.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
28.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
0.7
411
Tumor
0.6
313
Tumor
0.5
413
Tumor
0.5
883
Tumor
0.5
977
Tumor
0.5
965
Tumor
0.5
865
Tumor
0.5
427
Tumor
0.4
724
Normal
0.4
533
Tumor
0.4
1013
Tumor
0.4
112
Tumor
0.4
727
Tumor
0.4
937
Tumor
0.4
545
Tumor
0.4
123
Tumor
0.4
695
Tumor
0.4
527
Tumor
0.4
211
Tumor
0.4
497
Tumor
0.4
661
Tumor
0.3
953
Tumor
0.3
227
Tumor
0.3
647
Tumor
0.3
487
Tumor
0.3
443
Tumor
0.3
131
Tumor
0.3
983
Tumor
0.3
431
Tumor
0.3
357
Tumor
0.3
957
Tumor
0.3
161
Tumor
0.3
921
Tumor
0.3
923
Tumor
0.3
113
Tumor
0.3
467
Tumor
0.3
355
Tumor
0.3
1021
Tumor
0.3
367
Tumor
0.3
777
Tumor
0.2
951
Tumor
0.2
141
Tumor
0.2
571
Tumor
0.2
493
Tumor
0.2
955
Tumor
0.2
815
Tumor
0.2
461
Tumor
0.2
537
Tumor
0.2
391
Tumor
0.2
135
Tumor
0.2
881
Tumor
0.2
1031
Tumor
0.2
465
Tumor
0.2
685
Tumor
0.2
665
Tumor
0.2
635
Tumor
0.2
383
Tumor
0.2
785
Tumor
0.2
943
Tumor
0.2
513
Tumor
0.2
217
Tumor
0.2
873
Tumor
0.2
185
Tumor
0.1
1045
Tumor
0.1
563
Tumor
0.1
423
Tumor
0.1
1041
Tumor
0.1
433
Tumor
0.1
557
Tumor
0.1
477
Tumor
0.1
127
Tumor
0.1
221
Tumor
0.1
663
Tumor
0.1
817
Tumor
0.1
721
Tumor
0.1
851
Tumor
0.1
1015
Tumor
0.1
297
Tumor
0.1
573
Tumor
0.1
331
Tumor
0.1
445
Tumor
0.1
536
Normal
0.1
213
Tumor
0.1
515
Tumor
0.1
448
Normal
0.1
944
Normal
0.1
861
Tumor
0.1
1027
Tumor
0.1
867
Tumor
0.1
975
Tumor
0.1
447
Tumor
0.1
567
Tumor
0.1
491
Tumor
0.1
737
Tumor
0.1
878
Normal
0.1
525
Tumor
0.1
171
Tumor
0.1
137
Tumor
0.1
444
Normal
0.1
455
Tumor
0.1
713
Tumor
0.0
857
Tumor
0.0
415
Tumor
0.0
125
Tumor
0.0
341
Tumor
0.0
298
Normal
0.0
963
Tumor
0.0
277
Tumor
0.0
967
Tumor
0.0
451
Tumor
0.0
858
Normal
0.0
715
Tumor
0.0
535
Tumor
0.0
492
Normal
0.0
434
Normal
0.0
922
Normal
0.0
823
Tumor
0.0
114
Normal
0.0
196
Normal
0.0
432
Normal
0.0
755
Tumor
0.0
375
Tumor
0.0
271
Tumor
0.0
984
Normal
0.0
363
Tumor
0.0
257
Tumor
0.0
641
Tumor
0.0
938
Normal
0.0
824
Normal
0.0
421
Tumor
0.0
1014
Normal
0.0
818
Normal
0.0
146
Normal
0.0
966
Normal
0.0
393
Tumor
0.0
697
Tumor
0.0
925
Tumor
0.0
142
Normal
0.0
343
Tumor
0.0
698
Normal
0.0
534
Normal
0.0
686
Normal
0.0
353
Tumor
0.0
917
Tumor
0.0
741
Tumor
0.0
352
Normal
0.0
356
Normal
0.0
483
Tumor
0.0
981
Tumor
0.0
285
Tumor
0.0
636
Normal
0.0
628
Normal
0.0
1026
Normal
0.0
913
Tumor
0.0
126
Normal
0.0
261
Tumor
0.0
283
Tumor
0.0
395
Tumor
0.0
1032
Normal
0.0
954
Normal
0.0
387
Tumor
0.0
365
Tumor
0.0
916
Normal
0.0
426
Normal
0.0
267
Tumor
0.0
191
Tumor
0.0
627
Tumor
0.0
714
Normal
0.0
436
Normal
0.0
462
Normal
0.0
813
Tumor
0.0
124
Normal
0.0
351
Tumor
0.0
414
Normal
0.0
877
Tumor
0.0
232
Normal
0.0
1028
Normal
0.0
128
Normal
0.0
662
Normal
0.0
1022
Normal
0.0
327
Tumor
0.0
195
Tumor
0.0
111
Normal
0.0
384
Normal
0.0
554
Normal
0.0
778
Normal
0.0
523
Tumor
0.0
412
Normal
0.0
742
Normal
0.0
915
Tumor
0.0
615
Tumor
0.0
926
Normal
0.0
728
Normal
0.0
884
Normal
-0.1
192
Normal
-0.1
187
Tumor
-0.1
744
Normal
-0.1
911
Tumor
-0.1
1016
Normal
-0.1
528
Normal
-0.1
538
Normal
-0.1
314
Normal
-0.1
422
Normal
-0.1
284
Normal
-0.1
572
Normal
-0.1
924
Normal
-0.1
428
Normal
-0.1
743
Tumor
-0.1
616
Normal
-0.1
814
Normal
-0.1
864
Normal
-0.1
1046
Normal
-0.1
435
Tumor
-0.1
882
Normal
-0.1
618
Normal
-0.1
952
Normal
-0.1
311
Tumor
-0.1
132
Normal
-0.1
524
Normal
-0.1
376
Normal
-0.1
147
Tumor
-0.1
262
Normal
-0.1
328
Normal
-0.1
546
Normal
-0.1
648
Normal
-0.1
964
Normal
-0.1
912
Normal
-0.1
862
Normal
-0.1
385
Tumor
-0.1
671
Tumor
-0.1
756
Normal
-0.1
482
Normal
-0.1
526
Normal
-0.1
1025
Tumor
-0.1
517
Tumor
-0.1
416
Normal
-0.1
222
Normal
-0.1
212
Normal
-0.1
723
Tumor
-0.1
481
Tumor
-0.1
574
Normal
-0.1
664
Normal
-0.1
982
Normal
-0.1
866
Normal
-0.1
746
Normal
-0.1
368
Normal
-0.1
148
Normal
-0.1
218
Normal
-0.1
696
Normal
-0.1
471
Tumor
-0.1
358
Normal
-0.1
446
Normal
-0.1
874
Normal
-0.1
424
Normal
-0.1
468
Normal
-0.1
312
Normal
-0.1
978
Normal
-0.1
958
Normal
-0.1
456
Normal
-0.1
568
Normal
-0.1
716
Normal
-0.1
344
Normal
-0.1
738
Normal
-0.1
342
Normal
-0.1
162
Normal
-0.1
466
Normal
-0.1
868
Normal
-0.1
272
Normal
-0.1
488
Normal
-0.1
186
Normal
-0.1
332
Normal
-0.1
786
Normal
-0.1
558
Normal
-0.1
361
Tumor
-0.1
1044
Normal
-0.1
484
Normal
-0.1
516
Normal
-0.1
956
Normal
-0.1
268
Normal
-0.1
494
Normal
-0.1
564
Normal
-0.1
518
Normal
-0.1
138
Normal
-0.1
354
Normal
-0.1
918
Normal
-0.1
214
Normal
-0.1
968
Normal
-0.1
553
Tumor
-0.1
278
Normal
-0.1
642
Normal
-0.1
816
Normal
-0.1
364
Normal
-0.1
145
Tumor
-0.1
514
Normal
-0.1
228
Normal
-0.1
472
Normal
-0.1
1042
Normal
-0.1
672
Normal
-0.1
258
Normal
-0.2
914
Normal
-0.2
224
Normal
-0.2
392
Normal
-0.2
478
Normal
-0.2
722
Normal
-0.2
666
Normal
-0.2
464
Normal
-0.2
396
Normal
-0.2
366
Normal
-0.2
362
Normal
-0.2
286
Normal
-0.2
188
Normal
-0.2
386
Normal
-0.2
498
Normal
-0.2
852
Normal
-0.2
1043
Tumor
-0.2
463
Tumor
-0.2
474
Normal
-0.2
223
Tumor
-0.2
136
Normal
-0.2
976
Normal
-0.2
863
Tumor
-0.2
172
Normal
-0.2
394
Normal
-0.2
388
Normal
-0.2
617
Tumor
-0.2
452
Normal
-0.3
745
Tumor
-0.3
473
Tumor
-0.3
231
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
