We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPINT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
478.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
409.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
333.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
316.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
288.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
254.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
252.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
185.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
176.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
163.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
150.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
145.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
133.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
126.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
125.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
122.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
121.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
118.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
106.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
104.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
102.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
96.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
94.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
79.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
73.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
66.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
65.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
60.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
60.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
60.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
58.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
55.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
53.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
52.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
51.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
45.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
41.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
33.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
30.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPINT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.5
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
247.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
240.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
181.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
177.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
174.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
170.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
150.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
143.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
139.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
131.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
113.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
112.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
102.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
95.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
90.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
87.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
78.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
73.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
70.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
67.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
60.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
57.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
54.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
52.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
47.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
47.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
44.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
43.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
39.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
3.4
921
Tumor
3.2
553
Tumor
3.1
975
Tumor
2.9
951
Tumor
2.8
641
Tumor
2.7
271
Tumor
2.6
817
Tumor
2.5
331
Tumor
2.4
671
Tumor
2.3
1031
Tumor
2.3
385
Tumor
2.3
881
Tumor
2.2
395
Tumor
2.0
545
Tumor
1.7
883
Tumor
1.7
285
Tumor
1.6
455
Tumor
1.4
1025
Tumor
1.4
527
Tumor
1.4
1021
Tumor
1.3
416
Normal
1.3
221
Tumor
1.3
367
Tumor
1.2
697
Tumor
1.2
443
Tumor
0.9
311
Tumor
0.9
925
Tumor
0.8
211
Tumor
0.8
135
Tumor
0.7
425
Tumor
0.7
375
Tumor
0.7
393
Tumor
0.6
557
Tumor
0.6
257
Tumor
0.6
877
Tumor
0.6
917
Tumor
0.5
268
Normal
0.5
823
Tumor
0.5
976
Normal
0.5
343
Tumor
0.5
498
Normal
0.5
492
Normal
0.4
192
Normal
0.4
533
Tumor
0.4
743
Tumor
0.4
387
Tumor
0.3
272
Normal
0.3
538
Normal
0.3
535
Tumor
0.3
262
Normal
0.2
283
Tumor
0.2
874
Normal
0.2
744
Normal
0.2
277
Tumor
0.2
916
Normal
0.2
312
Normal
0.2
452
Normal
0.2
444
Normal
0.2
741
Tumor
0.1
664
Normal
0.1
672
Normal
0.1
355
Tumor
0.1
525
Tumor
0.1
384
Normal
0.1
415
Tumor
0.0
386
Normal
0.0
491
Tumor
0.0
478
Normal
0.0
483
Tumor
0.0
332
Normal
0.0
524
Normal
0.0
852
Normal
0.0
738
Normal
0.0
728
Normal
0.0
814
Normal
0.0
447
Tumor
0.0
213
Tumor
0.0
468
Normal
0.0
356
Normal
0.0
413
Tumor
0.0
422
Normal
0.0
364
Normal
0.0
742
Normal
0.0
195
Tumor
0.0
463
Tumor
-0.1
131
Tumor
-0.1
412
Normal
-0.1
472
Normal
-0.1
851
Tumor
-0.1
461
Tumor
-0.1
427
Tumor
-0.1
494
Normal
-0.1
536
Normal
-0.1
488
Normal
-0.1
328
Normal
-0.1
456
Normal
-0.1
813
Tumor
-0.1
737
Tumor
-0.1
723
Tumor
-0.1
666
Normal
-0.1
146
Normal
-0.2
884
Normal
-0.2
341
Tumor
-0.2
434
Normal
-0.2
882
Normal
-0.2
232
Normal
-0.2
284
Normal
-0.2
474
Normal
-0.2
574
Normal
-0.2
558
Normal
-0.2
214
Normal
-0.2
138
Normal
-0.2
878
Normal
-0.2
278
Normal
-0.2
464
Normal
-0.2
1042
Normal
-0.3
816
Normal
-0.3
445
Tumor
-0.3
466
Normal
-0.3
958
Normal
-0.3
222
Normal
-0.3
366
Normal
-0.3
923
Tumor
-0.3
224
Normal
-0.3
864
Normal
-0.3
368
Normal
-0.3
727
Tumor
-0.3
956
Normal
-0.3
396
Normal
-0.3
462
Normal
-0.3
383
Tumor
-0.3
426
Normal
-0.3
1028
Normal
-0.3
912
Normal
-0.3
467
Tumor
-0.3
258
Normal
-0.3
724
Normal
-0.3
362
Normal
-0.3
136
Normal
-0.3
914
Normal
-0.3
1032
Normal
-0.3
514
Normal
-0.3
862
Normal
-0.3
218
Normal
-0.3
642
Normal
-0.3
572
Normal
-0.3
573
Tumor
-0.3
647
Tumor
-0.3
922
Normal
-0.3
968
Normal
-0.3
546
Normal
-0.4
394
Normal
-0.4
967
Tumor
-0.4
424
Normal
-0.4
857
Tumor
-0.4
391
Tumor
-0.4
132
Normal
-0.4
314
Normal
-0.4
376
Normal
-0.4
484
Normal
-0.4
618
Normal
-0.4
428
Normal
-0.4
137
Tumor
-0.4
477
Tumor
-0.4
465
Tumor
-0.4
662
Normal
-0.4
228
Normal
-0.4
286
Normal
-0.4
388
Normal
-0.4
267
Tumor
-0.4
648
Normal
-0.4
448
Normal
-0.4
217
Tumor
-0.5
1046
Normal
-0.5
392
Normal
-0.5
142
Normal
-0.5
564
Normal
-0.5
516
Normal
-0.5
918
Normal
-0.5
537
Tumor
-0.5
1022
Normal
-0.5
421
Tumor
-0.5
196
Normal
-0.5
361
Tumor
-0.5
365
Tumor
-0.5
423
Tumor
-0.5
964
Normal
-0.5
954
Normal
-0.5
944
Normal
-0.5
966
Normal
-0.5
297
Tumor
-0.5
818
Normal
-0.5
414
Normal
-0.5
141
Tumor
-0.5
924
Normal
-0.5
534
Normal
-0.5
482
Normal
-0.5
212
Normal
-0.5
231
Tumor
-0.5
866
Normal
-0.5
145
Tumor
-0.5
963
Tumor
-0.5
698
Normal
-0.6
1026
Normal
-0.6
351
Tumor
-0.6
563
Tumor
-0.6
616
Normal
-0.6
868
Normal
-0.6
568
Normal
-0.6
451
Tumor
-0.6
191
Tumor
-0.6
298
Normal
-0.6
756
Normal
-0.6
1044
Normal
-0.6
528
Normal
-0.6
824
Normal
-0.7
554
Normal
-0.7
873
Tumor
-0.7
628
Normal
-0.7
913
Tumor
-0.7
313
Tumor
-0.7
863
Tumor
-0.7
354
Normal
-0.7
965
Tumor
-0.7
943
Tumor
-0.7
952
Normal
-0.7
481
Tumor
-0.7
1045
Tumor
-0.7
357
Tumor
-0.7
446
Normal
-0.8
344
Normal
-0.8
1027
Tumor
-0.8
786
Normal
-0.8
1041
Tumor
-0.8
938
Normal
-0.8
411
Tumor
-0.8
663
Tumor
-0.9
518
Normal
-0.9
661
Tumor
-0.9
261
Tumor
-0.9
487
Tumor
-0.9
567
Tumor
-0.9
858
Normal
-0.9
352
Normal
-0.9
571
Tumor
-0.9
957
Tumor
-0.9
815
Tumor
-0.9
473
Tumor
-0.9
526
Normal
-0.9
513
Tumor
-0.9
636
Normal
-0.9
911
Tumor
-0.9
497
Tumor
-1.0
926
Normal
-1.0
778
Normal
-1.0
358
Normal
-1.0
785
Tumor
-1.0
433
Tumor
-1.0
665
Tumor
-1.0
627
Tumor
-1.0
227
Tumor
-1.0
327
Tumor
-1.0
363
Tumor
-1.0
432
Normal
-1.1
353
Tumor
-1.1
617
Tumor
-1.1
867
Tumor
-1.1
493
Tumor
-1.1
515
Tumor
-1.1
436
Normal
-1.1
955
Tumor
-1.1
746
Normal
-1.1
223
Tumor
-1.1
342
Normal
-1.2
1043
Tumor
-1.3
523
Tumor
-1.3
615
Tumor
-1.3
755
Tumor
-1.3
431
Tumor
-1.3
435
Tumor
-1.3
937
Tumor
-1.3
517
Tumor
-1.4
777
Tumor
-1.4
865
Tumor
-1.4
861
Tumor
-1.4
635
Tumor
-1.5
953
Tumor
-1.7
915
Tumor
-1.8
745
Tumor
-2.1
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
